EsuBft910_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft910_8a-0001
Unique NameEsuBft910_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_633contigScaffold_633:623267..623864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXD3
ProteomeIdEsuBft910_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length59
Hectar predicted targeting categoryother localisation
Evalue4.1e-32
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePOGK
KEGG koko:K09228
DescriptionDNA binding
COG categoryCH
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft910_8aEsuBft910_8aEctocarpus subulatus male Bft15bgeneScaffold_633 623267..623864 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_8a-0001-exonEsuBft910_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_633 623267..623864 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_8a-0001-exonagat-three_prime_utr-22991Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_633 623267..623288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_8a-0001-cdsEsuBft910_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_633 623289..623696 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_8a-0001-exonagat-five_prime_utr-14931Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_633 623697..623864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_8a-0001EsuBft910_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_633 623289..623696 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft910_8a-0001 ID=EsuBft910_8a-0001|Name=EsuBft910_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=598bp|location=Sequence derived from alignment at Scaffold_633:623267..623864- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGCTGAAGCAGGAGGAGCAGCTCAGGGAGAAGGTCAGCGCCAACCCGAA
GCTTTCGAAGGCCAAGCAGGTTTCCAGGAAAGCTTCGACAGTCGACGCCG
GACAAGCCCGTGTGGACTACACCAACGAGCAGCGCAAGTAGCACCGCGGT
TGTGGTAATCGGGAGGTGATGAACAAGCTGCTCGAGCTGAAGCCTGACGC
CCTTGGCGGGATGCCGGCGAACGCGAAACCGGAGGAGGCGCTGGCTTTCA
AGGTCAAATTCAACTCCTGGTACCAACGGTTCCGCAAGCGGAATGGGTTC
AGCATCCGCCGGCGTACCAGCGTGGGCCAGAAACTGCCGAAGGGGGACGA
GGGTATGGCGTGGGCGACGGTGATGAAGCTGCGCGAGGCTCTCGTAAAGC
GCGCCGGTGAGATCTACGCTCGGCGCCACCCGCCGGCACCTGACGAGAGC
CCCATCAAAGGGGAGGATCTGACTTCCGAGCAGCTGGCGTCTGTGGAGGC
GGAGGTTTTCGAGGAACTCGGCAACATGGACCAGACGACAATCCAGCACG
TGATGCCGGTGGAGACCACTCTATAGAAGACCGGTGCGAAGGATGATC
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protein sequence of EsuBft910_8a-0001

>EsuBft910_8 ID=EsuBft910_8|Name=EsuBft910_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=135bp
MNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRT
SVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGED
LTSEQLASVEAEVFEELGNMDQTTIQHVMPVETTL
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mRNA from alignment at Scaffold_633:623267..623864-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft910_8a-0001 ID=EsuBft910_8a-0001|Name=EsuBft910_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=598bp|location=Sequence derived from alignment at Scaffold_633:623267..623864- (Ectocarpus subulatus male Bft15b)
TGGCTGAAGCAGGAGGAGCAGCTCAGGGAGAAGGTCAGCGCCAACCCGAA
GCTTTCGAAGGCCAAGCAGGTTTCCAGGAAAGCTTCGACAGTCGACGCCG
GACAAGCCCGTGTGGACTACACCAACGAGCAGCGCAAGTAGCACCGCGGT
TGTGGTAATCGGGAGGTGATGAACAAGCTGCTCGAGCTGAAGCCTGACGC
CCTTGGCGGGATGCCGGCGAACGCGAAACCGGAGGAGGCGCTGGCTTTCA
AGGTCAAATTCAACTCCTGGTACCAACGGTTCCGCAAGCGGAATGGGTTC
AGCATCCGCCGGCGTACCAGCGTGGGCCAGAAACTGCCGAAGGGGGACGA
GGGTATGGCGTGGGCGACGGTGATGAAGCTGCGCGAGGCTCTCGTAAAGC
GCGCCGGTGAGATCTACGCTCGGCGCCACCCGCCGGCACCTGACGAGAGC
CCCATCAAAGGGGAGGATCTGACTTCCGAGCAGCTGGCGTCTGTGGAGGC
GGAGGTTTTCGAGGAACTCGGCAACATGGACCAGACGACAATCCAGCACG
TGATGCCGGTGGAGACCACTCTATAGAAGACCGGTGCGAAGGATGATC
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Coding sequence (CDS) from alignment at Scaffold_633:623267..623864-

>EsuBft910_8a-0001 ID=EsuBft910_8a-0001|Name=EsuBft910_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=408bp|location=Sequence derived from alignment at Scaffold_633:623267..623864- (Ectocarpus subulatus male Bft15b)
ATGAACAAGCTGCTCGAGCTGAAGCCTGACGCCCTTGGCGGGATGCCGGC
GAACGCGAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTCAACTCCT
GGTACCAACGGTTCCGCAAGCGGAATGGGTTCAGCATCCGCCGGCGTACC
AGCGTGGGCCAGAAACTGCCGAAGGGGGACGAGGGTATGGCGTGGGCGAC
GGTGATGAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCTACG
CTCGGCGCCACCCGCCGGCACCTGACGAGAGCCCCATCAAAGGGGAGGAT
CTGACTTCCGAGCAGCTGGCGTCTGTGGAGGCGGAGGTTTTCGAGGAACT
CGGCAACATGGACCAGACGACAATCCAGCACGTGATGCCGGTGGAGACCA
CTCTATAG
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