EsuBft910_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft910_7a-0001
Unique NameEsuBft910_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_633contigScaffold_633:621491..623181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXD3
ProteomeIdEsuBft910_7
Protein domainsIPR004875
Protein domainsPTHR19303
Ownerapollo_admin@sb-roscoff.fr
Notepogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1453
Hectar predicted targeting categoryother localisation
Evalue3.86e-83
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePOGK
KEGG koko:K09228
DescriptionDNA binding
COG categoryCH
BRITEko00000,ko03000
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft910_7aEsuBft910_7aEctocarpus subulatus male Bft15bgeneScaffold_633 621491..623181 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_7a-0001-exonagat-exon-78473Ectocarpus subulatus male Bft15bexonScaffold_633 621491..622915 -
EsuBft910_7a-0001-exonEsuBft910_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_633 623154..623181 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_7a-0001-exonagat-three_prime_utr-22990Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_633 621491..622085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_7a-0001-cdsEsuBft910_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_633 622086..622915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_7a-0001EsuBft910_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_633 622086..623181 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft910_7a-0001 ID=EsuBft910_7a-0001|Name=EsuBft910_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1453bp|location=Sequence derived from alignment at Scaffold_633:621491..623181- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACATATTTATTTTTTGCGTGCCGGCAAAGAGAAGGAACGCTTCAC
GCTCGTTCTGGCTGTCATGGCGGACGGCAAAAAGGTTTCGCCGCGCATCA
TCTTCAAGGGCACGCCGTTCATCCCCCCGACCGTGAGCGGCAAGGGCAAG
AGCACCCTGCCGCGGAAGAACTCCGTCGCGTGGGAGATCCATCCTGCGAA
CCGTGCCAAGCACGCCCACCCTGCCAACGGCATGTCCTTCGGCGTGCAGG
GGAAGAGCTGGAGTGACCAGCGGGAGTGCAACGGGTGGATCTCGGGCAGC
TGGAAGCTCCGTCCCAACAACGGCAGCATCGTCCAGCAGCGCCCGTGCAT
CCTGGTGCTGGACGACTTCAAGTGCCACAAGGACGAGGGTTTCATCGCCG
CCCTCAAGAGAGACGCCAATACCATCATCATCTTCATCCCAGGCGGGATG
ACGCTCTTGCTCCAACCGCTCGACCGTTTGCTCAACAAGCAGATGAAGCG
GCTGCTGCGGGGCAAGTACACCGCCTACAGCGCGTCGGCGGTCGCAGACG
CCCGGTCGGGGAAGCTGAAGCCACCGGAGCGTGGCGTCGTCTCTACGTGG
TGCAAGGAAGCGTGGGAGTCCATCACCCCCGAGACGGTGAAGACTTGCTT
CATGATCTGCCGTCTCACGCTCGCGCTCGACGGCAGCGAAGACCACGCCT
GGTGCGAGCACAACTTCGGGGAAGACTACCGCGACCTTCTCGGGGAGCAG
CACGCCGTGCGGCTCGCTGAGCACCCCGACGTGACTCTCCCGCCGCTCAA
GCTGCCGAAGGTACCAGGGAGGTTCGACCCCAACCCCATCACGGCTGCTC
AGAAGTAGGTCGAGGGGAAGCTGCTGCCCTACGTCGCTGATGAGAGCGAC
GGCGACGTGGAAGTCGTGGAGGGGCAGGGAGGCGGGGGCGCCAAAGGAGA
AGTAGTCGAACTTTGAAGCATAGTTCTTTGGGATTGCCAGTGAGATTGGA
TGTTTTTGCGATGGTAGGGGCGCGGGCACGAAGTAGAGTTCAACCCGCCT
ATGAAATACAGTAGTAGCACGTTGGTGGCTCGTAGTGGTAGTTTGGTGTG
GGTTTTTACTTCGTTTTTGGTTTCATCTGCGATTAGAACTGTTGAGTGGA
TGCCGTTTGCCGATTTGCCGATCTTGATTCTTCAGAACGAAAAGAAGAGA
ACAAAGAGTACAAATACCACATTTTTGAACATCGTCATGGTGCCAAGGGC
AGCAGTAGCAGTGGAGCACGCGATTCAAGCTCCCACACTATCAAGAATTT
CCAGCACATGCTGGTGAAAGGGTATCGCTTACCGCCAAACCTCACCGCAT
ATATCGACGTCTCCGCACACTGTGCGGAGACGACGATACCTGTGCGATAA
TCTAACAAATCATTCGGAACCAGCTTTTTTTCCGCACACCCTGCGCCAAG
ACC
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protein sequence of EsuBft910_7a-0001

>EsuBft910_7 ID=EsuBft910_7|Name=EsuBft910_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=285bp
MTHIYFLRAGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGK
STLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWISGS
WKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGM
TLLLQPLDRLLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTW
CKEAWESITPETVKTCFMICRLTLALDGSEDHAWCEHNFGEDYRDLLGEQ
HAVRLAEHPDVTLPPLKLPKVPGRFDPNPITAAQK
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mRNA from alignment at Scaffold_633:621491..623181-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft910_7a-0001 ID=EsuBft910_7a-0001|Name=EsuBft910_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1691bp|location=Sequence derived from alignment at Scaffold_633:621491..623181- (Ectocarpus subulatus male Bft15b)
ATGACACATATTTATTTTTTGCGTGCCGGTACACGGTGCGATGTAGCTCT
ATCGGTAGACACAGGAGGGTTGCTACCTGTTTCTGCGGGATTATTCTACA
CTTCCTGTTTCATCGCATCCATTGTATCAACCAACTTAGTTTTCGAAACG
TCCGGTACCGTTTGCATCCATTGTATCAACCACACACCGCTGTCCTCGCA
GAAATATTCAACACTCTACTCCCCCACCCCCCTCCCCTCGCGTTGATTTT
TTCCCCCTCCCCTCAGGCAAAGAGAAGGAACGCTTCACGCTCGTTCTGGC
TGTCATGGCGGACGGCAAAAAGGTTTCGCCGCGCATCATCTTCAAGGGCA
CGCCGTTCATCCCCCCGACCGTGAGCGGCAAGGGCAAGAGCACCCTGCCG
CGGAAGAACTCCGTCGCGTGGGAGATCCATCCTGCGAACCGTGCCAAGCA
CGCCCACCCTGCCAACGGCATGTCCTTCGGCGTGCAGGGGAAGAGCTGGA
GTGACCAGCGGGAGTGCAACGGGTGGATCTCGGGCAGCTGGAAGCTCCGT
CCCAACAACGGCAGCATCGTCCAGCAGCGCCCGTGCATCCTGGTGCTGGA
CGACTTCAAGTGCCACAAGGACGAGGGTTTCATCGCCGCCCTCAAGAGAG
ACGCCAATACCATCATCATCTTCATCCCAGGCGGGATGACGCTCTTGCTC
CAACCGCTCGACCGTTTGCTCAACAAGCAGATGAAGCGGCTGCTGCGGGG
CAAGTACACCGCCTACAGCGCGTCGGCGGTCGCAGACGCCCGGTCGGGGA
AGCTGAAGCCACCGGAGCGTGGCGTCGTCTCTACGTGGTGCAAGGAAGCG
TGGGAGTCCATCACCCCCGAGACGGTGAAGACTTGCTTCATGATCTGCCG
TCTCACGCTCGCGCTCGACGGCAGCGAAGACCACGCCTGGTGCGAGCACA
ACTTCGGGGAAGACTACCGCGACCTTCTCGGGGAGCAGCACGCCGTGCGG
CTCGCTGAGCACCCCGACGTGACTCTCCCGCCGCTCAAGCTGCCGAAGGT
ACCAGGGAGGTTCGACCCCAACCCCATCACGGCTGCTCAGAAGTAGGTCG
AGGGGAAGCTGCTGCCCTACGTCGCTGATGAGAGCGACGGCGACGTGGAA
GTCGTGGAGGGGCAGGGAGGCGGGGGCGCCAAAGGAGAAGTAGTCGAACT
TTGAAGCATAGTTCTTTGGGATTGCCAGTGAGATTGGATGTTTTTGCGAT
GGTAGGGGCGCGGGCACGAAGTAGAGTTCAACCCGCCTATGAAATACAGT
AGTAGCACGTTGGTGGCTCGTAGTGGTAGTTTGGTGTGGGTTTTTACTTC
GTTTTTGGTTTCATCTGCGATTAGAACTGTTGAGTGGATGCCGTTTGCCG
ATTTGCCGATCTTGATTCTTCAGAACGAAAAGAAGAGAACAAAGAGTACA
AATACCACATTTTTGAACATCGTCATGGTGCCAAGGGCAGCAGTAGCAGT
GGAGCACGCGATTCAAGCTCCCACACTATCAAGAATTTCCAGCACATGCT
GGTGAAAGGGTATCGCTTACCGCCAAACCTCACCGCATATATCGACGTCT
CCGCACACTGTGCGGAGACGACGATACCTGTGCGATAATCTAACAAATCA
TTCGGAACCAGCTTTTTTTCCGCACACCCTGCGCCAAGACC
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Coding sequence (CDS) from alignment at Scaffold_633:621491..623181-

>EsuBft910_7a-0001 ID=EsuBft910_7a-0001|Name=EsuBft910_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=858bp|location=Sequence derived from alignment at Scaffold_633:621491..623181- (Ectocarpus subulatus male Bft15b)
ATGACACATATTTATTTTTTGCGTGCCGGCAAAGAGAAGGAACGCTTCAC
GCTCGTTCTGGCTGTCATGGCGGACGGCAAAAAGGTTTCGCCGCGCATCA
TCTTCAAGGGCACGCCGTTCATCCCCCCGACCGTGAGCGGCAAGGGCAAG
AGCACCCTGCCGCGGAAGAACTCCGTCGCGTGGGAGATCCATCCTGCGAA
CCGTGCCAAGCACGCCCACCCTGCCAACGGCATGTCCTTCGGCGTGCAGG
GGAAGAGCTGGAGTGACCAGCGGGAGTGCAACGGGTGGATCTCGGGCAGC
TGGAAGCTCCGTCCCAACAACGGCAGCATCGTCCAGCAGCGCCCGTGCAT
CCTGGTGCTGGACGACTTCAAGTGCCACAAGGACGAGGGTTTCATCGCCG
CCCTCAAGAGAGACGCCAATACCATCATCATCTTCATCCCAGGCGGGATG
ACGCTCTTGCTCCAACCGCTCGACCGTTTGCTCAACAAGCAGATGAAGCG
GCTGCTGCGGGGCAAGTACACCGCCTACAGCGCGTCGGCGGTCGCAGACG
CCCGGTCGGGGAAGCTGAAGCCACCGGAGCGTGGCGTCGTCTCTACGTGG
TGCAAGGAAGCGTGGGAGTCCATCACCCCCGAGACGGTGAAGACTTGCTT
CATGATCTGCCGTCTCACGCTCGCGCTCGACGGCAGCGAAGACCACGCCT
GGTGCGAGCACAACTTCGGGGAAGACTACCGCGACCTTCTCGGGGAGCAG
CACGCCGTGCGGCTCGCTGAGCACCCCGACGTGACTCTCCCGCCGCTCAA
GCTGCCGAAGGTACCAGGGAGGTTCGACCCCAACCCCATCACGGCTGCTC
AGAAGTAG
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