EsuBft910_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft910_2a-0001
Unique NameEsuBft910_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_633contigScaffold_633:556361..559127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLG1
ProteomeIdEsuBft910_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length197
Hectar predicted targeting categoryother localisation
Evalue4.43e-27
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionregulation of response to stimulus
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft910_2aEsuBft910_2aEctocarpus subulatus male Bft15bgeneScaffold_633 556361..559127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_2a-0001EsuBft910_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_633 556361..559127 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_2a-0001-exonagat-exon-78434Ectocarpus subulatus male Bft15bexonScaffold_633 556361..556487 -
EsuBft910_2a-0001-exonagat-exon-78433Ectocarpus subulatus male Bft15bexonScaffold_633 556594..557724 -
EsuBft910_2a-0001-exonEsuBft910_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_633 558164..558192 -
EsuBft910_2a-0001-exonagat-exon-78436Ectocarpus subulatus male Bft15bexonScaffold_633 558303..558349 -
EsuBft910_2a-0001-exonagat-exon-78432Ectocarpus subulatus male Bft15bexonScaffold_633 558419..559025 -
EsuBft910_2a-0001-exonagat-exon-78435Ectocarpus subulatus male Bft15bexonScaffold_633 559098..559127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft910_2a-0001-cdsEsuBft910_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_633 556361..556487 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft910_2a-0001 ID=EsuBft910_2a-0001|Name=EsuBft910_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1971bp|location=Sequence derived from alignment at Scaffold_633:556361..559127- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGTACCTGCTCTTGTTACGAAACATGATTCGTTGCTCTGTCGGGT
GCCAGGGAGCGCCGTTCTCGTCGTGGCAACGCGCGCGAACCCCTTTGCTG
ACAACAGCAAGAGAGCATCTACCCTAGAAAGCCTAGAAGAACAATCAAGA
CGCACCTGGAGCGAAAAAAGGAGGTACGTGTCATCGCTTCTCCGTACAGT
AGCCTCTGTGGCGCTTCCAGGGTCTCGCTTTCTCAAACATTGTTCGTCCT
GCATCTCAACAATACTTCTATGTTCACAGCAATGGCTGACCGCCGAGACT
ATCAAGAACCGTCAACGGGCATTCCAGGGAGGGGGTTCAAACGCTAATTC
TTCGTCGGAGCGCCCACCGTCGCCTCCGCCCTCGCTTTGGCTATGCAGAT
TCATCTCGATCTGCGGCCGCAGCTCGGACGGCCTGGCGTCGCTCAAGAAG
AAGATCTACGACGTCATTATGGAGCCAGGCACGGACAACTTCGCGTTCCC
GCACCTCCGTCAACATGTCCCAAACTCTTGGAGGAGGGTGTGGGCCGTCA
TGAGTGCACTCCACGTCGGGGTAGGCCTAAAGCAGGCCGTGCGGCTAGAA
GGCCCCATCGTTCCGCTTGAAGGGGGCGAAAATTCGAGCCTCTGGAAGTT
CAAAAAGCAAAACGAGGCTTCACAGCTCTTGCAGGTGTACATTGAGGCAC
ACGATTCCCTGAGTGACACGGAAATTATGGAGCAGCAGCTGGATGAACTC
CAGCTCTCGGACGAGCAGCGAAACGTAATCGACGCTCTTATCAAGGAGCA
GGTCAAGATCAAAGTAGAAGAAGCAGCAGCAGCAGAGCACCCCGCAACAC
AGAGCGAGGGCATGTCTTCCGAAGGAGGCGACACCCAGCTGGAGAGGCCG
GCTGGCTCGGAGTCAAGCCCGCGACCCGAAGACCAGCCCCGATCGCCGGC
GGACGTCAGCCTCATCCACACCCTCGCGCGGGCCTTGCAGAGGGTCAAGA
TAAAACCGGATGATGAATACAGCGAAGTCCCAACCCCTAAAGAATCAATA
CGTATTAGCGCAGGTATCGCATTCCCTGCATTCACCGGGAAGTTTAGCTC
CGAGGACGATGTACAGACGGCGGTAATGGTTTTTACCAGTCAATTTCGAT
CTTTGTTGGAGCAGGAGCGTTGCCTTGGGGCAATAGAATCGAAGAAAACG
ATTCGCGTAGGGAACACGGATGCGAATATCTCGGCGTTGAAGGTGGAACA
TGGGACGGAAGCTGTAGATCGTGCGGTTAAGGCTTGGCAGCTTATTATAT
CCAAGATACAAGTACCGACAATAGTCCCTGCAATCCTAGCAAGTGGTTGT
CCCACTGAATCGTGGGATCAATTTCTCAACTTTTACCGAGTGTACGCAGA
AAGGGACAAGTTGGAGTTGCAGGGGCAATTGTACACGTTGAAGCAGCAAG
TAGGGGAGGAGCCCCGGCGCTATCTCACAAGAGCATCAGCACCTCGCCAG
AAACTAGAAGCGTACGGTTGGGTGCAATCCGATCATGATGCTAACGTCCA
CTATGTGCGCAACCTTATGCCCGATTTCAATGTTCAGAGGAGCGTGTTGT
TGGCGCATTCGGAGGTCAAGACGGAATTGGTAGAGAAGGTGATACTGACC
ACCTGGGCGGAGACGGAGGCCGCTAGGAAGAGGGCGTCGGAGAGCGTGGG
GGCGTATGCCCTCGTCACTGGCGGTGATAACCGTGGTGGCGGGGGGGGGA
ACATGGGGGATAGGGGGAAGACGAGAGGACAATGGAGGACGGCAGCGCGG
CAACAGCAGCAACAACCGAAGCAGCCACAGCAGCAGCATCAGCCCGGGGT
TGGGGAGGTCCCTCGGGCGGCCAAGGTGCGAGCCACGGCGGAAGGCACGG
GCCCCAGCATGGGCGCCGGGGTTTTTCTGGAGGAGGACGTCATCAGCAGC
AGCCGGCAGGAGGAAGGTTAG
back to top

protein sequence of EsuBft910_2a-0001

>EsuBft910_2 ID=EsuBft910_2|Name=EsuBft910_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=656bp
MYVPALVTKHDSLLCRVPGSAVLVVATRANPFADNSKRASTLESLEEQSR
RTWSEKRRYVSSLLRTVASVALPGSRFLKHCSSCISTILLCSQQWLTAET
IKNRQRAFQGGGSNANSSSERPPSPPPSLWLCRFISICGRSSDGLASLKK
KIYDVIMEPGTDNFAFPHLRQHVPNSWRRVWAVMSALHVGVGLKQAVRLE
GPIVPLEGGENSSLWKFKKQNEASQLLQVYIEAHDSLSDTEIMEQQLDEL
QLSDEQRNVIDALIKEQVKIKVEEAAAAEHPATQSEGMSSEGGDTQLERP
AGSESSPRPEDQPRSPADVSLIHTLARALQRVKIKPDDEYSEVPTPKESI
RISAGIAFPAFTGKFSSEDDVQTAVMVFTSQFRSLLEQERCLGAIESKKT
IRVGNTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGC
PTESWDQFLNFYRVYAERDKLELQGQLYTLKQQVGEEPRRYLTRASAPRQ
KLEAYGWVQSDHDANVHYVRNLMPDFNVQRSVLLAHSEVKTELVEKVILT
TWAETEAARKRASESVGAYALVTGGDNRGGGGGNMGDRGKTRGQWRTAAR
QQQQQPKQPQQQHQPGVGEVPRAAKVRATAEGTGPSMGAGVFLEEDVISS
SRQEEG
back to top

mRNA from alignment at Scaffold_633:556361..559127-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft910_2a-0001 ID=EsuBft910_2a-0001|Name=EsuBft910_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2767bp|location=Sequence derived from alignment at Scaffold_633:556361..559127- (Ectocarpus subulatus male Bft15b)
ATGTACGTACCTGCTCTTGTTACGAAACATGTATGTCTAGACGCGTTGAC
CCAGACTTCCCATATATTGCCTCCAACCTTTCGCTCCTTTTTCTGCGTGC
AGGATTCGTTGCTCTGTCGGGTGCCAGGGAGCGCCGTTCTCGTCGTGGCA
ACGCGCGCGAACCCCTTTGCTGACAACAGCAAGAGAGCATCTACCCTAGA
AAGCCTAGAAGAACAATCAAGACGCACCTGGAGCGAAAAAAGGAGGTACG
TGTCATCGCTTCTCCGTACAGTAGCCTCTGTGGCGCTTCCAGGGTCTCGC
TTTCTCAAACATTGTTCGTCCTGCATCTCAACAATACTTCTATGTTCACA
GCAATGGCTGACCGCCGAGACTATCAAGAACCGTCAACGGGCATTCCAGG
GAGGGGGTTCAAACGCTAATTCTTCGTCGGAGCGCCCACCGTCGCCTCCG
CCCTCGCTTTGGCTATGCAGATTCATCTCGATCTGCGGCCGCAGCTCGGA
CGGCCTGGCGTCGCTCAAGAAGAAGATCTACGACGTCATTATGGAGCCAG
GCACGGACAACTTCGCGTTCCCGCACCTCCGTCAACATGTCCCAAACTCT
TGGAGGAGGGTGTGGGCCGTCATGAGTGCACTCCACGTCGGGGTAGGCCT
AAAGCAGGCCGTGCGGCTAGAAGGCCCCATCGTTCCGCTTGAAGGGGGCG
AAAATTCGAGTTTGTGAAGCGGAAAGACGCCTTGAAAACCCGGACAGCCA
ATGGGCGAAATAAGTCAACATTAAGAAGGCCTCTGGAAGTTCAAAAAGCA
AAACGAGGCTTCACAGCTCTTGCAGGTAAGGTGGTGCCTTTGTGAAAGCG
TTGAAGTCACGCTTGCGTTCATAGGTGCGTTCTTATTTGGGTTCCCGTCA
TGCGGACACCTCCGAGACCCGGATGTTGATCCAAGGTGTACATTGAGGCA
CACGATTCCCTGAGGTATGTACAAAGTGCCACTCCATTTGAAGTTCGAAA
CTTTCAAGTGCTGTCGGTTTTCGACTTCTCGAGGTGCATGTCTGTGTAGA
TCCACGATTACCTATGCTAGAAGGCCGACCCCTTGTTGATGTTATAACGA
TTACCTATGCTAGAAGGCCGACCCCTTGTTGATGTTATACGTTACACGTT
CCCTGTTTCGTTGAAAATTAGAGCCAATCCTTGCCGCACCATACCGCGCG
GGGTCAGGTCCTTCCGTCCCGTGACAGCCTGCGTATCATACCGTCAAGAC
AAAGGACCGTCCTGGCAAACGCTGTCGAGAAAAAATAGCTGGTGGTAATT
TCGTAGGCAGGCTGCCGCAGCGTCGGGAAGGGCCTGCTAGCGTGTGATAC
CATACGGGATCCCGAGGTGGGGCTAGCTACAAGAGGGTTCGGCCAGAGAA
CAGTGACACGGAAATTATGGAGCAGCAGCTGGATGAACTCCAGCTCTCGG
ACGAGCAGCGAAACGTAATCGACGCTCTTATCAAGGAGCAGGTCAAGATC
AAAGTAGAAGAAGCAGCAGCAGCAGAGCACCCCGCAACACAGAGCGAGGG
CATGTCTTCCGAAGGAGGCGACACCCAGCTGGAGAGGCCGGCTGGCTCGG
AGTCAAGCCCGCGACCCGAAGACCAGCCCCGATCGCCGGCGGACGTCAGC
CTCATCCACACCCTCGCGCGGGCCTTGCAGAGGGTCAAGATAAAACCGGA
TGATGAATACAGCGAAGTCCCAACCCCTAAAGAATCAATACGTATTAGCG
CAGGTATCGCATTCCCTGCATTCACCGGGAAGTTTAGCTCCGAGGACGAT
GTACAGACGGCGGTAATGGTTTTTACCAGTCAATTTCGATCTTTGTTGGA
GCAGGAGCGTTGCCTTGGGGCAATAGAATCGAAGAAAACGATTCGCGTAG
GGAACACGGATGCGAATATCTCGGCGTTGAAGGTGGAACATGGGACGGAA
GCTGTAGATCGTGCGGTTAAGGCTTGGCAGCTTATTATATCCAAGATACA
AGTACCGACAATAGTCCCTGCAATCCTAGCAAGTGGTTGTCCCACTGAAT
CGTGGGATCAATTTCTCAACTTTTACCGAGTGTACGCAGAAAGGGACAAG
TTGGAGTTGCAGGGGCAATTGTACACGTTGAAGCAGCAAGTAGGGGAGGA
GCCCCGGCGCTATCTCACAAGAGCATCAGCACCTCGCCAGAAACTAGAAG
CGTACGGTTGGGTGCAATCCGATCATGATGCTAACGTCCACTATGTGCGC
AACCTTATGCCCGATTTCAATGTTCAGAGGAGCGTGTTGTTGGCGCATTC
GGAGGTCAAGACGGAATTGGTAGAGAAGGTGATACTGACCACCTGGGCGG
AGACGGAGGCCGCTAGGAAGAGGGCGTCGGAGAGCGTGGGGGCGTATGCC
CTCGTCACTGGCGGTGATAACCGTGGTGGCGGGGGGGGGAACATGGGGGA
TAGGGGGAAGACGAGAGGACAATGGAGGACGGCAGCGCGGCAACAGCAGC
AACAACCGAAGCAGCCACAGCAGCAGCATCAGCCGTACTTACAGCAACAA
CAGGGATACCCGCTGCCGTACCCGACTGAGGCAAAATATTTTGACCTCCA
CAACTCCTCGCCCCACAGCAACGAGGAATGTCGCTTGAAGCGGGGTTGGG
GAGGTCCCTCGGGCGGCCAAGGTGCGAGCCACGGCGGAAGGCACGGGCCC
CAGCATGGGCGCCGGGGTTTTTCTGGAGGAGGACGTCATCAGCAGCAGCC
GGCAGGAGGAAGGTTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_633:556361..559127-

>EsuBft910_2a-0001 ID=EsuBft910_2a-0001|Name=EsuBft910_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1971bp|location=Sequence derived from alignment at Scaffold_633:556361..559127- (Ectocarpus subulatus male Bft15b)
ATGTACGTACCTGCTCTTGTTACGAAACATGATTCGTTGCTCTGTCGGGT
GCCAGGGAGCGCCGTTCTCGTCGTGGCAACGCGCGCGAACCCCTTTGCTG
ACAACAGCAAGAGAGCATCTACCCTAGAAAGCCTAGAAGAACAATCAAGA
CGCACCTGGAGCGAAAAAAGGAGGTACGTGTCATCGCTTCTCCGTACAGT
AGCCTCTGTGGCGCTTCCAGGGTCTCGCTTTCTCAAACATTGTTCGTCCT
GCATCTCAACAATACTTCTATGTTCACAGCAATGGCTGACCGCCGAGACT
ATCAAGAACCGTCAACGGGCATTCCAGGGAGGGGGTTCAAACGCTAATTC
TTCGTCGGAGCGCCCACCGTCGCCTCCGCCCTCGCTTTGGCTATGCAGAT
TCATCTCGATCTGCGGCCGCAGCTCGGACGGCCTGGCGTCGCTCAAGAAG
AAGATCTACGACGTCATTATGGAGCCAGGCACGGACAACTTCGCGTTCCC
GCACCTCCGTCAACATGTCCCAAACTCTTGGAGGAGGGTGTGGGCCGTCA
TGAGTGCACTCCACGTCGGGGTAGGCCTAAAGCAGGCCGTGCGGCTAGAA
GGCCCCATCGTTCCGCTTGAAGGGGGCGAAAATTCGAGCCTCTGGAAGTT
CAAAAAGCAAAACGAGGCTTCACAGCTCTTGCAGGTGTACATTGAGGCAC
ACGATTCCCTGAGTGACACGGAAATTATGGAGCAGCAGCTGGATGAACTC
CAGCTCTCGGACGAGCAGCGAAACGTAATCGACGCTCTTATCAAGGAGCA
GGTCAAGATCAAAGTAGAAGAAGCAGCAGCAGCAGAGCACCCCGCAACAC
AGAGCGAGGGCATGTCTTCCGAAGGAGGCGACACCCAGCTGGAGAGGCCG
GCTGGCTCGGAGTCAAGCCCGCGACCCGAAGACCAGCCCCGATCGCCGGC
GGACGTCAGCCTCATCCACACCCTCGCGCGGGCCTTGCAGAGGGTCAAGA
TAAAACCGGATGATGAATACAGCGAAGTCCCAACCCCTAAAGAATCAATA
CGTATTAGCGCAGGTATCGCATTCCCTGCATTCACCGGGAAGTTTAGCTC
CGAGGACGATGTACAGACGGCGGTAATGGTTTTTACCAGTCAATTTCGAT
CTTTGTTGGAGCAGGAGCGTTGCCTTGGGGCAATAGAATCGAAGAAAACG
ATTCGCGTAGGGAACACGGATGCGAATATCTCGGCGTTGAAGGTGGAACA
TGGGACGGAAGCTGTAGATCGTGCGGTTAAGGCTTGGCAGCTTATTATAT
CCAAGATACAAGTACCGACAATAGTCCCTGCAATCCTAGCAAGTGGTTGT
CCCACTGAATCGTGGGATCAATTTCTCAACTTTTACCGAGTGTACGCAGA
AAGGGACAAGTTGGAGTTGCAGGGGCAATTGTACACGTTGAAGCAGCAAG
TAGGGGAGGAGCCCCGGCGCTATCTCACAAGAGCATCAGCACCTCGCCAG
AAACTAGAAGCGTACGGTTGGGTGCAATCCGATCATGATGCTAACGTCCA
CTATGTGCGCAACCTTATGCCCGATTTCAATGTTCAGAGGAGCGTGTTGT
TGGCGCATTCGGAGGTCAAGACGGAATTGGTAGAGAAGGTGATACTGACC
ACCTGGGCGGAGACGGAGGCCGCTAGGAAGAGGGCGTCGGAGAGCGTGGG
GGCGTATGCCCTCGTCACTGGCGGTGATAACCGTGGTGGCGGGGGGGGGA
ACATGGGGGATAGGGGGAAGACGAGAGGACAATGGAGGACGGCAGCGCGG
CAACAGCAGCAACAACCGAAGCAGCCACAGCAGCAGCATCAGCCCGGGGT
TGGGGAGGTCCCTCGGGCGGCCAAGGTGCGAGCCACGGCGGAAGGCACGG
GCCCCAGCATGGGCGCCGGGGTTTTTCTGGAGGAGGACGTCATCAGCAGC
AGCCGGCAGGAGGAAGGTTAG
back to top