EsuBft90_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft90_5a-0001
Unique NameEsuBft90_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_65contigScaffold_65:343783..344199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft90_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length41
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft90_5aEsuBft90_5aEctocarpus subulatus male Bft15bgeneScaffold_65 343783..344199 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_5a-0001-exonEsuBft90_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_65 343783..344199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_5a-0001-cdsEsuBft90_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_65 343783..344199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_5a-0001EsuBft90_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_65 343783..344199 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft90_5a-0001 ID=EsuBft90_5a-0001|Name=EsuBft90_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=417bp|location=Sequence derived from alignment at Scaffold_65:343783..344199- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACAACCGCCTCCCCAAGCGCATGCTGTTGGGAGCGATGGCAGG
GGGCGTGGGATACCGGGGCGGGCAGGAGAGTGACTGGGTGTCTCGTCTAG
GAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAAGAAGGGGGGAAA
TGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTGCAACAAGGTCGAGGA
CGGGGCGGCATGGTTCATGAGGAGATGGCACAGGCAGGAGGCGGAAGCGT
CGGCGAAGCGCCAGCGCGCGAGAGAAGCAGAAGCAGGGGGCACGGCAATC
TCAGGACCGACGAGAAATAGAGTCGGGGAAGCGGCGGTGAGGGGGAAGAA
AGGGCGACCGGGCACTGCTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAG
CACTTGTGGCGAAGTAA
back to top

protein sequence of EsuBft90_5a-0001

>EsuBft90_5 ID=EsuBft90_5|Name=EsuBft90_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=138bp
MEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGK
WKESAKDPEVWCNKVEDGAAWFMRRWHRQEAEASAKRQRAREAEAGGTAI
SGPTRNRVGEAAVRGKKGRPGTAAVEASRAAEAALVAK
back to top

mRNA from alignment at Scaffold_65:343783..344199-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft90_5a-0001 ID=EsuBft90_5a-0001|Name=EsuBft90_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=417bp|location=Sequence derived from alignment at Scaffold_65:343783..344199- (Ectocarpus subulatus male Bft15b)
ATGGAGGACAACCGCCTCCCCAAGCGCATGCTGTTGGGAGCGATGGCAGG
GGGCGTGGGATACCGGGGCGGGCAGGAGAGTGACTGGGTGTCTCGTCTAG
GAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAAGAAGGGGGGAAA
TGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTGCAACAAGGTCGAGGA
CGGGGCGGCATGGTTCATGAGGAGATGGCACAGGCAGGAGGCGGAAGCGT
CGGCGAAGCGCCAGCGCGCGAGAGAAGCAGAAGCAGGGGGCACGGCAATC
TCAGGACCGACGAGAAATAGAGTCGGGGAAGCGGCGGTGAGGGGGAAGAA
AGGGCGACCGGGCACTGCTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAG
CACTTGTGGCGAAGTAA
back to top

Coding sequence (CDS) from alignment at Scaffold_65:343783..344199-

>EsuBft90_5a-0001 ID=EsuBft90_5a-0001|Name=EsuBft90_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=417bp|location=Sequence derived from alignment at Scaffold_65:343783..344199- (Ectocarpus subulatus male Bft15b)
ATGGAGGACAACCGCCTCCCCAAGCGCATGCTGTTGGGAGCGATGGCAGG
GGGCGTGGGATACCGGGGCGGGCAGGAGAGTGACTGGGTGTCTCGTCTAG
GAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAAGAAGGGGGGAAA
TGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTGCAACAAGGTCGAGGA
CGGGGCGGCATGGTTCATGAGGAGATGGCACAGGCAGGAGGCGGAAGCGT
CGGCGAAGCGCCAGCGCGCGAGAGAAGCAGAAGCAGGGGGCACGGCAATC
TCAGGACCGACGAGAAATAGAGTCGGGGAAGCGGCGGTGAGGGGGAAGAA
AGGGCGACCGGGCACTGCTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAG
CACTTGTGGCGAAGTAA
back to top