EsuBft90_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft90_3a-0001
Unique NameEsuBft90_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_65contigScaffold_65:355785..358184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog946362.XP_004995947.1
ProteomeIdEsuBft90_3
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPR01217
Protein domainsIPR013103
Protein domainsPTHR11439
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl33154|Opisthokonta
Length1764
Hectar predicted targeting categoryother localisation
Evalue5.28e-28
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta
Date last modified2016-06-13
Date creation2016-06-13
DescriptionEncoded by
COG categoryJ
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft90_3aEsuBft90_3aEctocarpus subulatus male Bft15bgeneScaffold_65 355785..358184 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_3a-0001-exonEsuBft90_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_65 355785..356140 -
EsuBft90_3a-0001-exonagat-exon-75520Ectocarpus subulatus male Bft15bexonScaffold_65 356233..356276 -
EsuBft90_3a-0001-exonagat-exon-75519Ectocarpus subulatus male Bft15bexonScaffold_65 356604..357163 -
EsuBft90_3a-0001-exonagat-exon-75518Ectocarpus subulatus male Bft15bexonScaffold_65 357381..358184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_3a-0001-cdsEsuBft90_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_65 355785..356140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_3a-0001EsuBft90_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_65 355785..358184 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft90_3a-0001 ID=EsuBft90_3a-0001|Name=EsuBft90_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1764bp|location=Sequence derived from alignment at Scaffold_65:355785..358184- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGCATGGGCACTCCACGGTGCTTCTACCTGCACGGCGTCAACAA
CCACTCGACGTCTACCGCCGTCGTTTTTCACGCTGACACAGGTCGCCTCG
CCCTCACCTACAACGTCATGTGGATCAACCGCAGGGCCGGGGCGCCGGCG
CCGGTACCGGGCATCGGGAGGGGTTCTTCGGTCGCCGCGGCGCCCTCGCC
GGCCACCGCCGTACCTGCGGCCGAGGCCGCACCGCCGCCGCCATCAAGGA
GGTACACCTACGTCCCGCCTGCACCAGCGACCACCGCACCGCCGCCGCCC
GCTTCCCCGCCGATCTTCACAGGATCCTTAGCCCCGTCGCCAATTTCCGT
CGCCCCATCATCAGCCCCACCGTCGACCGCAACAACGCCGCCCCATTCGC
CCCCGAGCCTGCCGCCTCCGCCGCCGCAGCCCACCAGTGCCGCCACCCCC
GCTCCTCCGCACCCGCCGCTTTCGAAACGAGCCGTGAAGGAGTTGGGACG
AAAGCACACGAGGGTACACGGTCGCACGCGCGGAAATGGAGTGCGGTTCG
TTGATGAGCAACAACAACCGCTGTCGCCAACCGGTGGCGGCGCCGCTCTC
CACCACCGTCTTGGTCTGTTAGCGATGATGGACAAGGACTTCCTCATCCC
GTCGCTCGGCACCCGGGAGGCCGTGGATAGGACGCCGCGACATACCGACC
CCGCCGCAGCCGGATCCAAGTCTTGGAGACCGTGGAAGCAGGGGGGCCGT
GGGAGCTGGGGGCCCCGTGGATTCCGGGGGGGGGGTGGAAGACCGCAGAC
GTTCCAACCAGTAGAGAACGCGATCAATGCCAAGTGGTTCTTTAACTGCA
AAGGCAAACGAGTACGGATGGCCGACGAAATTCAAGGCAAGACTTTTACC
GGGGGGGGACATGCAGAGGCTTCGATTGATTTTGGAGAATTATTTGCACC
CACCGTGTCCAGTGTGCGCTTGTTGGCAGCATTAGCATGCGAGCAGAATC
TTGACTTGTGCCATATCGATATTCAGCAGGCTTTTGTGCAGTCTGAGCTT
GACGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGGTTATCTGG
CCTGATAGTGAAGCTGTGGAAGAGTCTGTATGGTTTGAAGCAGGCATCAC
GACTTTGCCATGCGCACCTGACGAGGTGTTTATCACTATTCGTTTTTTTG
CAGTGTCTGGCGGGTGCATGTGTTTTTCGATTGATGGAGGAGGGACATGT
GATCATGATCCACGTGGATGACGTTGTTGCTGCAGGGCAGAAGGAGCGGT
GTGACAAGTGTGGCAGGGATATCAACGAGATGGTCCCCGTGAAGAACCTT
GGAGAGTTGAGGTGGACGAGTTGGATGGGGATTACATTTGAGAGGGGCGT
CGTGACAGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAGTGCGTTACGC
TTTCCACCACGGAAGTAGAGTATGTGGCAATTGCTGACGTCTTGAATAAA
GTGTTGTTCTTGAGGCAGGTGTGGCGTTTTATGTTGCCAGATGCGAGTAT
GCCGTGCATCCCGGCGTTCGAGGATAATCAGGGAGCACTTCAGATTGCGC
ACAACCCGATCACGAACTCCAACTCGAACCACATCGGTTTACGGCATCAC
TTTATCAGGGAGCTGGTAGACAGGAAAGAGATTTCAATTACTCATGTGCC
GACGAAGGCTATTAGCAAGGAGTCTTTTGCGTTGCACCGTGAATTTGTGA
TCAACTTGCAGTGA
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protein sequence of EsuBft90_3a-0001

>EsuBft90_3 ID=EsuBft90_3|Name=EsuBft90_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=587bp
MNGMGTPRCFYLHGVNNHSTSTAVVFHADTGRLALTYNVMWINRRAGAPA
PVPGIGRGSSVAAAPSPATAVPAAEAAPPPPSRRYTYVPPAPATTAPPPP
ASPPIFTGSLAPSPISVAPSSAPPSTATTPPHSPPSLPPPPPQPTSAATP
APPHPPLSKRAVKELGRKHTRVHGRTRGNGVRFVDEQQQPLSPTGGGAAL
HHRLGLLAMMDKDFLIPSLGTREAVDRTPRHTDPAAAGSKSWRPWKQGGR
GSWGPRGFRGGGGRPQTFQPVENAINAKWFFNCKGKRVRMADEIQGKTFT
GGGHAEASIDFGELFAPTVSSVRLLAALACEQNLDLCHIDIQQAFVQSEL
DEDVFMRLPQGCGRLSGLIVKLWKSLYGLKQASRLCHAHLTRCLSLFVFL
QCLAGACVFRLMEEGHVIMIHVDDVVAAGQKERCDKCGRDINEMVPVKNL
GELRWTSWMGITFERGVVTGCVTWFSRTQKCVTLSTTEVEYVAIADVLNK
VLFLRQVWRFMLPDASMPCIPAFEDNQGALQIAHNPITNSNSNHIGLRHH
FIRELVDRKEISITHVPTKAISKESFALHREFVINLQ
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mRNA from alignment at Scaffold_65:355785..358184-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft90_3a-0001 ID=EsuBft90_3a-0001|Name=EsuBft90_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2400bp|location=Sequence derived from alignment at Scaffold_65:355785..358184- (Ectocarpus subulatus male Bft15b)
ATGAACGGCATGGGCACTCCACGGTGCTTCTACCTGCACGGCGTCAACAA
CCACTCGACGTCTACCGCCGTCGTTTTTCACGCTGACACAGGTCGCCTCG
CCCTCACCTACAACGTCATGTGGATCAACCGCAGGGCCGGGGCGCCGGCG
CCGGTACCGGGCATCGGGAGGGGTTCTTCGGTCGCCGCGGCGCCCTCGCC
GGCCACCGCCGTACCTGCGGCCGAGGCCGCACCGCCGCCGCCATCAAGGA
GGTACACCTACGTCCCGCCTGCACCAGCGACCACCGCACCGCCGCCGCCC
GCTTCCCCGCCGATCTTCACAGGATCCTTAGCCCCGTCGCCAATTTCCGT
CGCCCCATCATCAGCCCCACCGTCGACCGCAACAACGCCGCCCCATTCGC
CCCCGAGCCTGCCGCCTCCGCCGCCGCAGCCCACCAGTGCCGCCACCCCC
GCTCCTCCGCACCCGCCGCTTTCGAAACGAGCCGTGAAGGAGTTGGGACG
AAAGCACACGAGGGTACACGGTCGCACGCGCGGAAATGGAGTGCGGTTCG
TTGATGAGCAACAACAACCGCTGTCGCCAACCGGTGGCGGCGCCGCTCTC
CACCACCGTCTTGGTCTGTTAGCGATGATGGACAAGGACTTCCTCATCCC
GTCGCTCGGCACCCGGGAGGCCGTGGATAGGACGCCGCGACATACCGACC
CCGCCGCAGCCGGATCCAAGTCTTGGAGACCGTGGAAGCAGGGGGGCCGT
GGGAGCTGGGGGCCCCGTGGATTCCGGGGGGGGGGTGGAAGACCGCAGAC
GTTCGTAACGATGTTCGCCACCGCGAGGATGTGAACGCCGCTCTTCGCGC
CGAGCGCCCGCCCGACAAGATGCCAGACCTTCCTCACTGCCTCGCCAGCG
ACCTCCAAGTGCCGAAAACGTTGAAGGAGGCCATGCGGTCTCAACATTCA
GAGTCGTGGGATGATGCACTCGGTCGAGGGTTATTCGGTTTGTTGGATGC
AGGAACTTTTAGTCCGTGTAGCAACCAGTAGAGAACGCGATCAATGCCAA
GTGGTTCTTTAACTGCAAAGGCAAACGAGTACGGATGGCCGACGAAATTC
AAGGCAAGACTTTTACCGGGGGGGGACATGCAGAGGCTTCGATTGATTTT
GGAGAATTATTTGCACCCACCGTGTCCAGTGTGCGCTTGTTGGCAGCATT
AGCATGCGAGCAGAATCTTGACTTGTGCCATATCGATATTCAGCAGGCTT
TTGTGCAGTCTGAGCTTGACGAGGATGTTTTCATGCGCTTACCGCAGGGG
TGTGGTAGGTTATCTGGCCTGATAGTGAAGCTGTGGAAGAGTCTGTATGG
TTTGAAGCAGGCATCACGACTTTGCCATGCGCACCTGACGAGGTGTTTAT
CACTATTCGTTTTTTTGCAGTGTCTGGCGGGTGCATGTGTTTTTCGATTG
ATGGAGGAGGGACATGTGATCATGATCCACGTGGATGACGTTGTTGCTGC
AGGGCAGAAGGAGCGGTGTGACAAGTGTGGCAGGGATATCAACGAGATGG
TCCCCGTGAAGAACCTTGGAGAGTTGAGGTGGTACTCCGCGTGCTTTTAC
TAGAGAAACGTAGAGAGAGGGCTGTCGAAAATTTCGCAGCAGAGGTTTGC
CGACGAGCTGGTTGCAGAGTATGGCGTTGAGTGGGGGCAGAGCGTGCCTC
TGTCTGTTGGCGTTAAGCTCTCCGACCTTGACGTGAATGAAGCAAGTGCT
GATGTCCCTTTTCGCGAGTTGGTAGGATCTCTGATGTGGTTGGCCACTCA
AACACGGCCGGACATTGCCAATGCAGTTCGAGCAGTAGCGCGTTATAGCG
CGTCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTTTATAATAC
GTACGCAGGACGAGTTGGATGGGGATTACATTTGAGAGGGGCGTCGTGAC
AGGTATGAGCATGCAGGTGTTTGTGGATGCCGACTATGCAAGCAAAGCGA
CAGACCGTAGATCGGTGTCAGGAGGGCTAGTAATGGTGGGGAAGGGTGTG
TGACTTGGTTTTCGAGGACGCAGAAGTGCGTTACGCTTTCCACCACGGAA
GTAGAGTATGTGGCAATTGCTGACGTCTTGAATAAAGTGTTGTTCTTGAG
GCAGGTGTGGCGTTTTATGTTGCCAGATGCGAGTATGCCGTGCATCCCGG
CGTTCGAGGATAATCAGGGAGCACTTCAGATTGCGCACAACCCGATCACG
AACTCCAACTCGAACCACATCGGTTTACGGCATCACTTTATCAGGGAGCT
GGTAGACAGGAAAGAGATTTCAATTACTCATGTGCCGACGAAGGCTATTA
GCAAGGAGTCTTTTGCGTTGCACCGTGAATTTGTGATCAACTTGCAGTGA
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Coding sequence (CDS) from alignment at Scaffold_65:355785..358184-

>EsuBft90_3a-0001 ID=EsuBft90_3a-0001|Name=EsuBft90_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1764bp|location=Sequence derived from alignment at Scaffold_65:355785..358184- (Ectocarpus subulatus male Bft15b)
ATGAACGGCATGGGCACTCCACGGTGCTTCTACCTGCACGGCGTCAACAA
CCACTCGACGTCTACCGCCGTCGTTTTTCACGCTGACACAGGTCGCCTCG
CCCTCACCTACAACGTCATGTGGATCAACCGCAGGGCCGGGGCGCCGGCG
CCGGTACCGGGCATCGGGAGGGGTTCTTCGGTCGCCGCGGCGCCCTCGCC
GGCCACCGCCGTACCTGCGGCCGAGGCCGCACCGCCGCCGCCATCAAGGA
GGTACACCTACGTCCCGCCTGCACCAGCGACCACCGCACCGCCGCCGCCC
GCTTCCCCGCCGATCTTCACAGGATCCTTAGCCCCGTCGCCAATTTCCGT
CGCCCCATCATCAGCCCCACCGTCGACCGCAACAACGCCGCCCCATTCGC
CCCCGAGCCTGCCGCCTCCGCCGCCGCAGCCCACCAGTGCCGCCACCCCC
GCTCCTCCGCACCCGCCGCTTTCGAAACGAGCCGTGAAGGAGTTGGGACG
AAAGCACACGAGGGTACACGGTCGCACGCGCGGAAATGGAGTGCGGTTCG
TTGATGAGCAACAACAACCGCTGTCGCCAACCGGTGGCGGCGCCGCTCTC
CACCACCGTCTTGGTCTGTTAGCGATGATGGACAAGGACTTCCTCATCCC
GTCGCTCGGCACCCGGGAGGCCGTGGATAGGACGCCGCGACATACCGACC
CCGCCGCAGCCGGATCCAAGTCTTGGAGACCGTGGAAGCAGGGGGGCCGT
GGGAGCTGGGGGCCCCGTGGATTCCGGGGGGGGGGTGGAAGACCGCAGAC
GTTCCAACCAGTAGAGAACGCGATCAATGCCAAGTGGTTCTTTAACTGCA
AAGGCAAACGAGTACGGATGGCCGACGAAATTCAAGGCAAGACTTTTACC
GGGGGGGGACATGCAGAGGCTTCGATTGATTTTGGAGAATTATTTGCACC
CACCGTGTCCAGTGTGCGCTTGTTGGCAGCATTAGCATGCGAGCAGAATC
TTGACTTGTGCCATATCGATATTCAGCAGGCTTTTGTGCAGTCTGAGCTT
GACGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGGTTATCTGG
CCTGATAGTGAAGCTGTGGAAGAGTCTGTATGGTTTGAAGCAGGCATCAC
GACTTTGCCATGCGCACCTGACGAGGTGTTTATCACTATTCGTTTTTTTG
CAGTGTCTGGCGGGTGCATGTGTTTTTCGATTGATGGAGGAGGGACATGT
GATCATGATCCACGTGGATGACGTTGTTGCTGCAGGGCAGAAGGAGCGGT
GTGACAAGTGTGGCAGGGATATCAACGAGATGGTCCCCGTGAAGAACCTT
GGAGAGTTGAGGTGGACGAGTTGGATGGGGATTACATTTGAGAGGGGCGT
CGTGACAGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAGTGCGTTACGC
TTTCCACCACGGAAGTAGAGTATGTGGCAATTGCTGACGTCTTGAATAAA
GTGTTGTTCTTGAGGCAGGTGTGGCGTTTTATGTTGCCAGATGCGAGTAT
GCCGTGCATCCCGGCGTTCGAGGATAATCAGGGAGCACTTCAGATTGCGC
ACAACCCGATCACGAACTCCAACTCGAACCACATCGGTTTACGGCATCAC
TTTATCAGGGAGCTGGTAGACAGGAAAGAGATTTCAATTACTCATGTGCC
GACGAAGGCTATTAGCAAGGAGTCTTTTGCGTTGCACCGTGAATTTGTGA
TCAACTTGCAGTGA
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