EsuBft90_31a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft90_31a-0001
Unique NameEsuBft90_31a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_65contigScaffold_65:62622..64686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft90_31
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length84
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft90_31aEsuBft90_31aEctocarpus subulatus male Bft15bgeneScaffold_65 62622..64686 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_31a-0001-exonagat-exon-75669Ectocarpus subulatus male Bft15bexonScaffold_65 62622..63265 -
EsuBft90_31a-0001-exonEsuBft90_31a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_65 64491..64686 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_31a-0001-exonagat-three_prime_utr-22981Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_65 62622..63165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_31a-0001-cdsEsuBft90_31a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_65 63166..63265 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_31a-0001-exonagat-five_prime_utr-14925Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_65 64631..64686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_31a-0001EsuBft90_31Ectocarpus subulatus male Bft15bpolypeptideScaffold_65 63166..64630 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft90_31a-0001 ID=EsuBft90_31a-0001|Name=EsuBft90_31a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=840bp|location=Sequence derived from alignment at Scaffold_65:62622..64686- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCTTCTGAACAACATCGGCACGACCAGGTTCGGCGTCTTGAGCTGGAG
GTGCTGATGCACGGTGCTTCCGAAGGCGCACTCGGGGTGCGTGTTTTCCA
AGATGTGCCGGCAACGGGAAAGGGTGCTTGCGACATATGCGGCTCCCCGA
TGGTGTTCGAAAAGACGATGAGGAAGGGCAAGCAGGCCACGCTACAGTTT
CACCGCGACGAGAAACGAACGGACGCTGACGATTCCAGCAGGGGCAGCGA
CATGGAAAGCGGGGAGGACAGCAGTAGCAGCAGCGATGGTATGTAGCGAT
GATGATAACGAGGAGGAAGATGACGACGATGGTCTCCTACAATTTGAGCA
GCTATCGGACAAGAATGATACGTGAAAGTGGTTGTAGGTTTGCCACGCCA
GCCGTGTCAGCGTTAGCAGGAAGAAAGGAAGAGCCCACGACAAACGACGA
CGACGGCGACAGCTGGCTGGGAAGACTGCGAGGGACACCTCGACTCAAGA
GGTCATGGTTTGGTGATATATGTACGGACAGGAACCGCCATCTACTATTG
CATGGCCTTGTTTCCCCCTGGAGTATGACGTGTTGGTATCGAGCACAGCA
CATGCTACCGTCGGATGGTATTGAGTCGAAGCAGGGGATAGTGTTCTGGT
TGCCGACAGCGACGAGGCGTGGCGTAGATTATCGCGAGCAGTGCGTTTTC
GCGCCAATGCGAAGAAACATCTGTCGTTGACCTCTGAGCCGACAAGGGCA
TATGGAGCAAACTCGGCTTGGGTTGTTGAATCCACCATGTCGTTTGCGTG
AGGCACAGGAATGACGGCAGCATAGGCAAGGAACGAAGGA
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protein sequence of EsuBft90_31a-0001

>EsuBft90_31 ID=EsuBft90_31|Name=EsuBft90_31a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=79bp
MHGASEGALGVRVFQDVPATGKGACDICGSPMVFEKTMRKGKQATLQFHR
DEKRTDADDSSRGSDMESGEDSSSSSDGM
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mRNA from alignment at Scaffold_65:62622..64686-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft90_31a-0001 ID=EsuBft90_31a-0001|Name=EsuBft90_31a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2065bp|location=Sequence derived from alignment at Scaffold_65:62622..64686- (Ectocarpus subulatus male Bft15b)
CCCCTTCTGAACAACATCGGCACGACCAGGTTCGGCGTCTTGAGCTGGAG
GTGCTGATGCACGGTGCTTCCGAAGGCGCACTCGGGGTGCGTGTTTTCCA
AGATGTGCCGGCAACGGGAAAGGGTGCTTGCGACATATGCGGCTCCCCGA
TGGTGTTCGAAAAGACGATGAGGAAGGGCAAGCAGGCCACGCTACAGTGA
GGTCGCAGTCTCAGGTTGCTCTGGCACAGCAGTGCTTGGTATTCGAGGAT
GGAGTTGGGAAATTAAGTTTCATGAGGATATAGAACAGGGAGGGGGTAGG
CAGACCCTATCCCCAACCAACCCTAGCCCACCTTCCCCGATTGCTAACCC
TAACCCTAACCCTAACCCTAACCCTACTAAGTTATCCATTATGTTTTTCT
TTAATAGAATAACCAGGTGAAGGCTTTTGTCCAAAGTGGTGCTGAAATGG
CAGGACTTTGTTGATCCCGACAGCAGCGGAGATGCAACTTTGAGGAGACG
TAATGGACCAATGCGTCTTCCCCATCTCAGAGGACCACACTAAATACCCT
GAAGCGAACACATGTGGGATGTCGATGCCCCCCCCCCCCCTGCTTTGCGG
TTGGTTGGCTCTTGTGGAAGATGTAGACTGCCAACATGCGCCCAACGATG
ATTCTGGTGTATCCGTATTGGTTTGAATGATCTTTTCCCTCAGGCTGTTG
AGATCTTGGGAAAAGACTGTACCCCGACCTACATAGATCAAGCGATCCGT
GTAGTTTTGACAGGTTTGATGGATGCCCCACCCCCCCTAACCCTAACTAA
GCCGTCAAGATCCCAGAGCAAACAACGTACGTAGGACACGCTGAGAGGGA
CCATGGCAGACTGGTAGTCTAGCGGTCACCGTGCTTCTCAACGGGACATG
AAAGTAGGCGCTACTGCTGCTCACGGGGACCGCGAAATGACCCACCAGAC
AGGACAAGTAGACATGGGGCACTGGTGGACACCCGCTAAGTTCTTTTGAA
GCCCGCGAATGATGCGCATGCCTGCAAGAGAGCCGAGCGTGCACGCAAGT
CCCGACCGAGGCCGCTTGACCGAAATCTGTGTACTGTTGTTGTTGTTGTT
GCTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGCCTTCACATTAAAAACCGTCCCGTTCTCT
CTAGCCAGTACCTTCTTCTGTCCGTACAAGTCTACTACATGACGCGGTCG
GTTCCTGTGATCACAGACGAACTAACCTAAAAAAGAATACGAAAATAAAA
AGGACCCGAAGTACAACGCCGCTATTTTTTCTTGTTCTCGCCGGGACACT
TGTTGCTTCCCGATCGCGCAGGTTTCACCGCGACGAGAAACGAACGGACG
CTGACGATTCCAGCAGGGGCAGCGACATGGAAAGCGGGGAGGACAGCAGT
AGCAGCAGCGATGGTATGTAGCGATGATGATAACGAGGAGGAAGATGACG
ACGATGGTCTCCTACAATTTGAGCAGCTATCGGACAAGAATGATACGTGA
AAGTGGTTGTAGGTTTGCCACGCCAGCCGTGTCAGCGTTAGCAGGAAGAA
AGGAAGAGCCCACGACAAACGACGACGACGGCGACAGCTGGCTGGGAAGA
CTGCGAGGGACACCTCGACTCAAGAGGTCATGGTTTGGTGATATATGTAC
GGACAGGAACCGCCATCTACTATTGCATGGCCTTGTTTCCCCCTGGAGTA
TGACGTGTTGGTATCGAGCACAGCACATGCTACCGTCGGATGGTATTGAG
TCGAAGCAGGGGATAGTGTTCTGGTTGCCGACAGCGACGAGGCGTGGCGT
AGATTATCGCGAGCAGTGCGTTTTCGCGCCAATGCGAAGAAACATCTGTC
GTTGACCTCTGAGCCGACAAGGGCATATGGAGCAAACTCGGCTTGGGTTG
TTGAATCCACCATGTCGTTTGCGTGAGGCACAGGAATGACGGCAGCATAG
GCAAGGAACGAAGGA
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Coding sequence (CDS) from alignment at Scaffold_65:62622..64686-

>EsuBft90_31a-0001 ID=EsuBft90_31a-0001|Name=EsuBft90_31a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=240bp|location=Sequence derived from alignment at Scaffold_65:62622..64686- (Ectocarpus subulatus male Bft15b)
ATGCACGGTGCTTCCGAAGGCGCACTCGGGGTGCGTGTTTTCCAAGATGT
GCCGGCAACGGGAAAGGGTGCTTGCGACATATGCGGCTCCCCGATGGTGT
TCGAAAAGACGATGAGGAAGGGCAAGCAGGCCACGCTACAGTTTCACCGC
GACGAGAAACGAACGGACGCTGACGATTCCAGCAGGGGCAGCGACATGGA
AAGCGGGGAGGACAGCAGTAGCAGCAGCGATGGTATGTAG
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