EsuBft90_30a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft90_30a-0001
Unique Name	EsuBft90_30a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_65	contig	Scaffold_65:67751..73120 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7425.NV18849-PA
ProteomeId	EsuBft90_30
Protein domains	Coil
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	1146
Hectar predicted targeting category	other localisation
Evalue	1.18e-41
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BGB6@33208\|Metazoa,3D5G4@33213\|Bilateria,41ZUZ@6656\|Arthropoda,3SKEY@50557\|Insecta
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824
GO	0097159
GO	1901363
GO	0044424
GO	0090304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft90_30a	EsuBft90_30a	Ectocarpus subulatus male Bft15b	gene	Scaffold_65 67751..73120 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_30a-0001-exon	agat-exon-75668	Ectocarpus subulatus male Bft15b	exon	Scaffold_65 67751..68451 -
EsuBft90_30a-0001-exon	EsuBft90_30a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_65 72676..73120 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_30a-0001-cds	EsuBft90_30a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_65 67751..68451 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_30a-0001	EsuBft90_30	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_65 67751..73120 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_65:67751..73120-
coding sequence from alignment at Scaffold_65:67751..73120-

spliced messenger RNA

>EsuBft90_30a-0001 ID=EsuBft90_30a-0001|Name=EsuBft90_30a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1146bp|location=Sequence derived from alignment at Scaffold_65:67751..73120- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACGTCGGACAGCGGTTCCGTCGGAGGGCTGGGGGAAGAGACCTC
AGCCACGCAACAGCAACACGCCGAGGATCCGGCGATTGCGAGGCTGGAGG
GCCAGCTATCGCAGCTGATGAGCGTCGTGATGGAGTTGAAGAGGAAGGAG
CCTGGTGACGCCGTGGCGGGCGATGCCAGTAGGGGCGGCGGTGCTGCCGT
CCCAAGCCAGAGAGAGGCTCTGCAGCCCGGGGGCGGCGGGGCATTTCCGT
GGGAAACGGCTCGTGATGGGCGAAAATACCCGCGGGAAAGCAGCTGGGAC
AACATACCGGGAGCGAGTCCTCGGGTTCCAGCGAGAGTGGCGGCTGGCTG
GGCAAGTAGATCGGGAGCGAATCCTGAGTGGCCAGCCGGAATGAGCCCGG
GCGTAGGACCGGACCGCGGGGAAGCGAGGGGGTTAACCCCCCAAGGACCG
AAGCGGGATGACGAGAGTGGAGGGGAGCGGCCGGTGAGGGAGGCCATCGG
CAGCATGATGTGGGTGTCGACGTTCACGCGCCCGGACATCTGCTTCGCCG
TGCGTGCGGTAGCGCGCCATGCCCATGCCCCTGCCGAGAGGCACTGGAAG
GCGATCGTGAAGATCCTCGCCTACCTCAAAGAGACGAGGGACCTCGGGAT
CACCTACAAACGGGGATCGGGGTTGGGGCTGGAGGTGTACGTGGACGCTA
GCTACGCCGACGCTGAGGATAGGCGTTCGGTGTCAGGGCTGGCAACAACG
GTTGGAGGGACCGTCATCAGCCACGGTAGCAAGACGCAAGCTATCGTATC
TTTGTCGTCTACGGAGGCAGAGTACATTGCTGCCGGGGAGGGTGTGAAGG
AAGCTTTGTTTGTGCGTGCAGTGCTTTCGTTTATTGCCCCAGAGACCAGT
GGCAGCAGCATTCAGGTCCTTGAGGACAATCAGGGGGCTATGGCTTTGGT
GCAGAACCCCCTTAGCTCAGCGCGTAGCAAGCACATCGACGTGCGGTACC
ACTTCATTCGTGGATTGTTTAGGTCGGGGGAAATCTCGATCAAGTTTGTG
TCGACGTCGGAGCAGCATGCCGATGTGCTTACCAAGGCTCATAGCAAGAG
CAGTCTGCAGTACCACCGGCGCAAGTTGATGAATTTGCCGGAGTAG

protein sequence of EsuBft90_30a-0001

>EsuBft90_30 ID=EsuBft90_30|Name=EsuBft90_30a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=381bp
MSTSDSGSVGGLGEETSATQQQHAEDPAIARLEGQLSQLMSVVMELKRKE
PGDAVAGDASRGGGAAVPSQREALQPGGGGAFPWETARDGRKYPRESSWD
NIPGASPRVPARVAAGWASRSGANPEWPAGMSPGVGPDRGEARGLTPQGP
KRDDESGGERPVREAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWK
AIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAEDRRSVSGLATT
VGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETS
GSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFV
STSEQHADVLTKAHSKSSLQYHRRKLMNLPE

mRNA from alignment at Scaffold_65:67751..73120-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft90_30a-0001 ID=EsuBft90_30a-0001|Name=EsuBft90_30a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5370bp|location=Sequence derived from alignment at Scaffold_65:67751..73120- (Ectocarpus subulatus male Bft15b)
ATGTCTACGTCGGACAGCGGTTCCGTCGGAGGGCTGGGGGAAGAGACCTC
AGCCACGCAACAGCAACACGCCGAGGATCCGGCGATTGCGAGGCTGGAGG
GCCAGCTATCGCAGCTGATGAGCGTCGTGATGGAGTTGAAGAGGAAGGAG
CCTGGTGACGCCGTGGCGGGCGATGCCAGTAGGGGCGGCGGTGCTGCCGT
CCCAAGCCAGAGAGAGGCTCTGCAGCCCGGGGGCGGCGGGGCATTTCCGT
GGGAAACGGCTCGTGATGGGCGAAAATACCCGCGGGAAAGCAGCTGGGAC
AACATACCGGGAGCGAGTCCTCGGGTTCCAGCGAGAGTGGCGGCTGGCTG
GGCAAGTAGATCGGGAGCGAATCCTGAGTGGCCAGCCGGAATGAGCCCGG
GCGTAGGACCGGACCGCGGGGAAGCGAGGGGGTTAACCCCCCAAGGTGAG
CAAACCGCAATTCGAGGGGCCAGAGCATTTTTCGATGGGTACAGCAGCAG
TAGCCAAAAAAGTGTTACGGTCAATGCACCGCGTCTCGAAGGGGAGAGTC
GCGGCCACGGGTACGACTCGTGGAGAAAGGCACTTATTCAAGCCGCGAAA
ACCGTAGGCTTGGACGGGCAGCTTGTCGGCAACGCCGAGAGGCACGCACC
CGTCGGTGACCCAAACAGGCCTAGCTCGGAGCTGTATAGCTTGGGCTACA
CAAGTGATGAGGTTCAGAGGGGCCTCCAGGCGTTCCACTTTGTGACTACA
GCCATCGTCCGAGAAGCCGACAAGGCAATCGTGAATAAATGCGAGACCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATAGGACCGAAGCGGGATGACGAGAGTGGAGGGGA
GCGGCCGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCGACGTTCA
CGCGCCCGGACATCTGCTTCGCCGTGCGTGCGGTAGCGCGCCATGCCCAT
GCCCCTGCCGAGAGGCACTGGAAGGCGATCGTGAAGATCCTCGCCTACCT
CAAAGAGACGAGGGACCTCGGGATCACCTACAAACGGGGATCGGGGTTGG
GGCTGGAGGTGTACGTGGACGCTAGCTACGCCGACGCTGAGGATAGGCGT
TCGGTGTCAGGGCTGGCAACAACGGTTGGAGGGACCGTCATCAGCCACGG
TAGCAAGACGCAAGCTATCGTATCTTTGTCGTCTACGGAGGCAGAGTACA
TTGCTGCCGGGGAGGGTGTGAAGGAAGCTTTGTTTGTGCGTGCAGTGCTT
TCGTTTATTGCCCCAGAGACCAGTGGCAGCAGCATTCAGGTCCTTGAGGA
CAATCAGGGGGCTATGGCTTTGGTGCAGAACCCCCTTAGCTCAGCGCGTA
GCAAGCACATCGACGTGCGGTACCACTTCATTCGTGGATTGTTTAGGTCG
GGGGAAATCTCGATCAAGTTTGTGTCGACGTCGGAGCAGCATGCCGATGT
GCTTACCAAGGCTCATAGCAAGAGCAGTCTGCAGTACCACCGGCGCAAGT
TGATGAATTTGCCGGAGTAG

Coding sequence (CDS) from alignment at Scaffold_65:67751..73120-

>EsuBft90_30a-0001 ID=EsuBft90_30a-0001|Name=EsuBft90_30a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1146bp|location=Sequence derived from alignment at Scaffold_65:67751..73120- (Ectocarpus subulatus male Bft15b)
ATGTCTACGTCGGACAGCGGTTCCGTCGGAGGGCTGGGGGAAGAGACCTC
AGCCACGCAACAGCAACACGCCGAGGATCCGGCGATTGCGAGGCTGGAGG
GCCAGCTATCGCAGCTGATGAGCGTCGTGATGGAGTTGAAGAGGAAGGAG
CCTGGTGACGCCGTGGCGGGCGATGCCAGTAGGGGCGGCGGTGCTGCCGT
CCCAAGCCAGAGAGAGGCTCTGCAGCCCGGGGGCGGCGGGGCATTTCCGT
GGGAAACGGCTCGTGATGGGCGAAAATACCCGCGGGAAAGCAGCTGGGAC
AACATACCGGGAGCGAGTCCTCGGGTTCCAGCGAGAGTGGCGGCTGGCTG
GGCAAGTAGATCGGGAGCGAATCCTGAGTGGCCAGCCGGAATGAGCCCGG
GCGTAGGACCGGACCGCGGGGAAGCGAGGGGGTTAACCCCCCAAGGACCG
AAGCGGGATGACGAGAGTGGAGGGGAGCGGCCGGTGAGGGAGGCCATCGG
CAGCATGATGTGGGTGTCGACGTTCACGCGCCCGGACATCTGCTTCGCCG
TGCGTGCGGTAGCGCGCCATGCCCATGCCCCTGCCGAGAGGCACTGGAAG
GCGATCGTGAAGATCCTCGCCTACCTCAAAGAGACGAGGGACCTCGGGAT
CACCTACAAACGGGGATCGGGGTTGGGGCTGGAGGTGTACGTGGACGCTA
GCTACGCCGACGCTGAGGATAGGCGTTCGGTGTCAGGGCTGGCAACAACG
GTTGGAGGGACCGTCATCAGCCACGGTAGCAAGACGCAAGCTATCGTATC
TTTGTCGTCTACGGAGGCAGAGTACATTGCTGCCGGGGAGGGTGTGAAGG
AAGCTTTGTTTGTGCGTGCAGTGCTTTCGTTTATTGCCCCAGAGACCAGT
GGCAGCAGCATTCAGGTCCTTGAGGACAATCAGGGGGCTATGGCTTTGGT
GCAGAACCCCCTTAGCTCAGCGCGTAGCAAGCACATCGACGTGCGGTACC
ACTTCATTCGTGGATTGTTTAGGTCGGGGGAAATCTCGATCAAGTTTGTG
TCGACGTCGGAGCAGCATGCCGATGTGCTTACCAAGGCTCATAGCAAGAG
CAGTCTGCAGTACCACCGGCGCAAGTTGATGAATTTGCCGGAGTAG