EsuBft90_29a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft90_29a-0001
Unique NameEsuBft90_29a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_65contigScaffold_65:75295..77157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4081.Solyc11g062200.1.1
ProteomeIdEsuBft90_29
Protein domainsIPR013103
Protein domainsSSF56672
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl35493|Streptophyta
Length1791
Hectar predicted targeting categoryother localisation
Evalue1.79e-79
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,44UC5@71274|asterids
Date last modified2016-06-13
Date creation2016-06-13
DescriptionMitochondrial protein
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0097159
GO1901363
GO0044424
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft90_29aEsuBft90_29aEctocarpus subulatus male Bft15bgeneScaffold_65 75295..77157 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_29a-0001-exonEsuBft90_29a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_65 75295..75755 +
EsuBft90_29a-0001-exonagat-exon-75667Ectocarpus subulatus male Bft15bexonScaffold_65 75828..77157 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_29a-0001-exonagat-five_prime_utr-14923Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_65 75295..75738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_29a-0001-cdsEsuBft90_29a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_65 75739..75755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_29a-0001EsuBft90_29Ectocarpus subulatus male Bft15bpolypeptideScaffold_65 75739..77157 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft90_29a-0001 ID=EsuBft90_29a-0001|Name=EsuBft90_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1791bp|location=Sequence derived from alignment at Scaffold_65:75295..77157+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGCACATAGCCATTATGAGTCAATGTTCAGTAGCACTGCACTTAC
TTGTACGTCGTAGATCATCGTAGATCTGTTATGTGCCGGTTGGTATGTAA
CGTGCGTTGTATATGCGGAGGAATTACTTCTGTAGGATTCTATGTTGCCT
TGACGAGTAGCTCACTCTCTCGTGTGGATCCTTCCTGACTGTCTGGCATC
GTAGACATCCTGGTCATCTCCAGTACCCAGCCATCTTCTGGACTCCTGCA
TACTCTGCGGTTTATCTGTGTGTGTTGGCCACATAAGCGCTAGTGTTTAC
AACATCTTGTCACCTTCTTCATCACACGGAAGCACTCACGTCTTCCAGGG
CGTCCACAACACTAATGTCACCAACTTGATCAGCGTCAAGGACACAGCCT
CTCTGCCACCTTGCTGGGGTATACCACAATATCCATAATAGGTTATGAGC
CTCGTGTGTGTGATCTTCAGATTCTACTCTCTCCGCGTGGGAGCTCCAAC
AGTTGAGTTCAACCTCATCTTCGATCAGATGGATGTTTCTACCGCTTTCC
TCTACGCGGACATCCAAGAAGAAGTATTCGTGGAACAACCACCCGGTTTC
GAGGTCAAGGACAAGGAGGATGGAGGTGACATGGTAATGAAGCTGAATAA
GAGTCTCTACGGACTTGCTCAAAGCCCAGGCAACTGGTTCAACACCATCG
ATCCCGTGATCGTCGAGATTGGATTCGTCGCACTCAAGTCAGACCCGTGC
GTGTATTTGTACGATCACAACGGGGCCAAGATCTACCTGACTCTCTACGT
CGATGACCTTCTCCTGGCCGGCAACGACTCTGACGCCATTTCGATGGTGA
AAGGGAAGTTGCAAAAGCGCTTCAAAATGACCGACCTGGGGGAAGCATCT
CTTGTCCTCGGGATGGAAATTAGGAGGGATCGCGAGGCAAATACCTTGAC
CATTTCCCAGGAAGCGTACTGCAAATCAATCCTTGAACGGTTTGGGATGT
CGGGCTCCAAGCCGACCAGTACACCTGGGTACGGCTCCGAAATCTCAAAT
ATCCAACCAGAAGACACACTTCTCGACGAGAAAGAGACCCGCAAGTACCA
AGGGATCGTGGGATCACTCATGTACATTGCGCAAGTGTTGAGATACGACA
TCATGTACGCGACAGGTCAGCTGGCTCGCCCGATGGCGAAACCCAGCAAG
GTTCACATGGTGGCGGCAAAGCACACCCTTCGTTACTTGGCTGGAACGAT
CGATTTCAGCATCACTTACAAGAAAGGTGGTTTCAAGCTCGCGACTTTCT
CGGACTCCAACTGGGCGAACAACCCTGACAACGGGAAGTCCACCTCGAGC
TACCTGACGATGCTGGCGAACGCTCCCATGAGCTTCAGGTCAGGGCTGCA
AGGTCTGACAGCAATGTCCACCATGGAAGCAGAGCTGGTCGCGTCGGCGC
TGGCGATGAAGGAAGCAGTGTTTTGCTCCAACATGATGACGGAGCTTGGA
TTTGGGAAAGAATTTGCACAACTGCCCGTGTACTGCGATAACACGGCTAC
TCTACATGCATTGGGGAACCGGTCCTTCAGCTCGAGGACCAAACACATCG
CGTTGCGGTTCTTCTTTATTCGAGAACTGGTGACGGAGGGGAAGATCTCC
ATCCATTACTTCCCGACGGAGGACAACCTCGCCGACATCGGTACCAAGCA
TTTCAACAAACACAGGTTCGAACACCTAATGGACCTCATCAACAACTTCG
ACGTCAACGAGTTCACCGCCGTCGAATATAAAGGAAAATGA
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protein sequence of EsuBft90_29a-0001

>EsuBft90_29 ID=EsuBft90_29|Name=EsuBft90_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=448bp
MSLVCVIFRFYSLRVGAPTVEFNLIFDQMDVSTAFLYADIQEEVFVEQPP
GFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSD
PCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGE
ASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEI
SNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKP
SKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKST
SSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTE
LGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGK
ISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNFDVNEFTAVEYKGK
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mRNA from alignment at Scaffold_65:75295..77157+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft90_29a-0001 ID=EsuBft90_29a-0001|Name=EsuBft90_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1863bp|location=Sequence derived from alignment at Scaffold_65:75295..77157+ (Ectocarpus subulatus male Bft15b)
ATGTTAGCACATAGCCATTATGAGTCAATGTTCAGTAGCACTGCACTTAC
TTGTACGTCGTAGATCATCGTAGATCTGTTATGTGCCGGTTGGTATGTAA
CGTGCGTTGTATATGCGGAGGAATTACTTCTGTAGGATTCTATGTTGCCT
TGACGAGTAGCTCACTCTCTCGTGTGGATCCTTCCTGACTGTCTGGCATC
GTAGACATCCTGGTCATCTCCAGTACCCAGCCATCTTCTGGACTCCTGCA
TACTCTGCGGTTTATCTGTGTGTGTTGGCCACATAAGCGCTAGTGTTTAC
AACATCTTGTCACCTTCTTCATCACACGGAAGCACTCACGTCTTCCAGGG
CGTCCACAACACTAATGTCACCAACTTGATCAGCGTCAAGGACACAGCCT
CTCTGCCACCTTGCTGGGGTATACCACAATATCCATAATAGGTTATGAGC
CTCGTGTGTGTGTGAGTGGAGGTCCGCGACGGCTGCGACTCTTTCCACTG
TCGCAGAGGACTGCTGTGAGGCACGCACACCAGGATCTTCAGATTCTACT
CTCTCCGCGTGGGAGCTCCAACAGTTGAGTTCAACCTCATCTTCGATCAG
ATGGATGTTTCTACCGCTTTCCTCTACGCGGACATCCAAGAAGAAGTATT
CGTGGAACAACCACCCGGTTTCGAGGTCAAGGACAAGGAGGATGGAGGTG
ACATGGTAATGAAGCTGAATAAGAGTCTCTACGGACTTGCTCAAAGCCCA
GGCAACTGGTTCAACACCATCGATCCCGTGATCGTCGAGATTGGATTCGT
CGCACTCAAGTCAGACCCGTGCGTGTATTTGTACGATCACAACGGGGCCA
AGATCTACCTGACTCTCTACGTCGATGACCTTCTCCTGGCCGGCAACGAC
TCTGACGCCATTTCGATGGTGAAAGGGAAGTTGCAAAAGCGCTTCAAAAT
GACCGACCTGGGGGAAGCATCTCTTGTCCTCGGGATGGAAATTAGGAGGG
ATCGCGAGGCAAATACCTTGACCATTTCCCAGGAAGCGTACTGCAAATCA
ATCCTTGAACGGTTTGGGATGTCGGGCTCCAAGCCGACCAGTACACCTGG
GTACGGCTCCGAAATCTCAAATATCCAACCAGAAGACACACTTCTCGACG
AGAAAGAGACCCGCAAGTACCAAGGGATCGTGGGATCACTCATGTACATT
GCGCAAGTGTTGAGATACGACATCATGTACGCGACAGGTCAGCTGGCTCG
CCCGATGGCGAAACCCAGCAAGGTTCACATGGTGGCGGCAAAGCACACCC
TTCGTTACTTGGCTGGAACGATCGATTTCAGCATCACTTACAAGAAAGGT
GGTTTCAAGCTCGCGACTTTCTCGGACTCCAACTGGGCGAACAACCCTGA
CAACGGGAAGTCCACCTCGAGCTACCTGACGATGCTGGCGAACGCTCCCA
TGAGCTTCAGGTCAGGGCTGCAAGGTCTGACAGCAATGTCCACCATGGAA
GCAGAGCTGGTCGCGTCGGCGCTGGCGATGAAGGAAGCAGTGTTTTGCTC
CAACATGATGACGGAGCTTGGATTTGGGAAAGAATTTGCACAACTGCCCG
TGTACTGCGATAACACGGCTACTCTACATGCATTGGGGAACCGGTCCTTC
AGCTCGAGGACCAAACACATCGCGTTGCGGTTCTTCTTTATTCGAGAACT
GGTGACGGAGGGGAAGATCTCCATCCATTACTTCCCGACGGAGGACAACC
TCGCCGACATCGGTACCAAGCATTTCAACAAACACAGGTTCGAACACCTA
ATGGACCTCATCAACAACTTCGACGTCAACGAGTTCACCGCCGTCGAATA
TAAAGGAAAATGA
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Coding sequence (CDS) from alignment at Scaffold_65:75295..77157+

>EsuBft90_29a-0001 ID=EsuBft90_29a-0001|Name=EsuBft90_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1347bp|location=Sequence derived from alignment at Scaffold_65:75295..77157+ (Ectocarpus subulatus male Bft15b)
ATGAGCCTCGTGTGTGTGATCTTCAGATTCTACTCTCTCCGCGTGGGAGC
TCCAACAGTTGAGTTCAACCTCATCTTCGATCAGATGGATGTTTCTACCG
CTTTCCTCTACGCGGACATCCAAGAAGAAGTATTCGTGGAACAACCACCC
GGTTTCGAGGTCAAGGACAAGGAGGATGGAGGTGACATGGTAATGAAGCT
GAATAAGAGTCTCTACGGACTTGCTCAAAGCCCAGGCAACTGGTTCAACA
CCATCGATCCCGTGATCGTCGAGATTGGATTCGTCGCACTCAAGTCAGAC
CCGTGCGTGTATTTGTACGATCACAACGGGGCCAAGATCTACCTGACTCT
CTACGTCGATGACCTTCTCCTGGCCGGCAACGACTCTGACGCCATTTCGA
TGGTGAAAGGGAAGTTGCAAAAGCGCTTCAAAATGACCGACCTGGGGGAA
GCATCTCTTGTCCTCGGGATGGAAATTAGGAGGGATCGCGAGGCAAATAC
CTTGACCATTTCCCAGGAAGCGTACTGCAAATCAATCCTTGAACGGTTTG
GGATGTCGGGCTCCAAGCCGACCAGTACACCTGGGTACGGCTCCGAAATC
TCAAATATCCAACCAGAAGACACACTTCTCGACGAGAAAGAGACCCGCAA
GTACCAAGGGATCGTGGGATCACTCATGTACATTGCGCAAGTGTTGAGAT
ACGACATCATGTACGCGACAGGTCAGCTGGCTCGCCCGATGGCGAAACCC
AGCAAGGTTCACATGGTGGCGGCAAAGCACACCCTTCGTTACTTGGCTGG
AACGATCGATTTCAGCATCACTTACAAGAAAGGTGGTTTCAAGCTCGCGA
CTTTCTCGGACTCCAACTGGGCGAACAACCCTGACAACGGGAAGTCCACC
TCGAGCTACCTGACGATGCTGGCGAACGCTCCCATGAGCTTCAGGTCAGG
GCTGCAAGGTCTGACAGCAATGTCCACCATGGAAGCAGAGCTGGTCGCGT
CGGCGCTGGCGATGAAGGAAGCAGTGTTTTGCTCCAACATGATGACGGAG
CTTGGATTTGGGAAAGAATTTGCACAACTGCCCGTGTACTGCGATAACAC
GGCTACTCTACATGCATTGGGGAACCGGTCCTTCAGCTCGAGGACCAAAC
ACATCGCGTTGCGGTTCTTCTTTATTCGAGAACTGGTGACGGAGGGGAAG
ATCTCCATCCATTACTTCCCGACGGAGGACAACCTCGCCGACATCGGTAC
CAAGCATTTCAACAAACACAGGTTCGAACACCTAATGGACCTCATCAACA
ACTTCGACGTCAACGAGTTCACCGCCGTCGAATATAAAGGAAAATGA
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