EsuBft90_26a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft90_26a-0001
Unique NameEsuBft90_26a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_65contigScaffold_65:126288..129038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G7M3
ProteomeIdEsuBft90_26
Protein domainsPTHR24198
Protein domainsIPR002110
Protein domainsIPR020683
Ownerapollo_admin@sb-roscoff.fr
Noteankyrin-3 os:homo sapiens gn:ank3 pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length2190
Hectar predicted targeting categoryother localisation
Evalue9.46e-220
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-22_001890.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameASB7
KEGG koko:K10329
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Descriptionspectrin binding
COG categoryI
BRITEko00000,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0032414
GO0008092
GO0072659
GO0086070
GO0033365
GO0030054
GO0045184
GO0030016
GO0007399
GO0045202
GO0086019
GO0043266
GO2000021
GO0019899
GO0043270
GO0051924
GO0032386
GO0043231
GO0032989
GO0005515
GO0005856
GO0098590
GO0048468
GO0007165
GO0086004
GO1902582
GO0044304
GO0086001
GO0044449
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft90_26aEsuBft90_26aEctocarpus subulatus male Bft15bgeneScaffold_65 126288..129038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_26a-0001EsuBft90_26Ectocarpus subulatus male Bft15bpolypeptideScaffold_65 126963..128948 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_26a-0001-exonagat-exon-75628Ectocarpus subulatus male Bft15bexonScaffold_65 126288..126328 +
EsuBft90_26a-0001-exonEsuBft90_26a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_65 126890..129038 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_26a-0001-exonagat-five_prime_utr-14920Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_65 126288..126328 +
EsuBft90_26a-0001-exonagat-five_prime_utr-14921Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_65 126890..126962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_26a-0001-cdsEsuBft90_26a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_65 126963..128948 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_26a-0001-exonagat-three_prime_utr-22976Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_65 128949..129038 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft90_26a-0001 ID=EsuBft90_26a-0001|Name=EsuBft90_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2190bp|location=Sequence derived from alignment at Scaffold_65:126288..129038+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTCTCATGCGTCTCACCGGACAAACAATTTGAGCAGGCAAGGCCTCACT
CTGTGCTTCCTGCGAGATCCTCATCATCTCCGTAACATCTCCGAACCACC
AGCAAGACACGCGCATGGCGAGAACATCAGAAGCAATTCCTCCTGGCTTC
CACACTTACGATCCGCGCCAATGGGTAATTCGCCATCAACGGCTAGTTTC
GCAGATATTCGCACCATCAGAGATTGAGGGTTTTTCTACCGTGACAGATA
AGTCGATGAACAGCACTCCAATCGGAGAAGCAGGCGAGATAATTCACTGT
GCCGCCTCGCAGGGCCTCACTTTCGCCGTCCAAGCCTTGCTTGCAGAACG
GCGTACCGCCTGTGACGCAAAAGATCGCTTCGGCAAAACTCCTCTTCACT
GGGCTGCCGGACAAGGACACGTCGACACTGTCTTGGCGCTCGTGAATGCC
GGAGCCTTGGTCGACTCTCGCGACCATTTCAACGCCACACCACTCATGCT
CGCGGCCTTGGGAGGGCACGAGCACGTCGTTCACTGTCTGCTGTATGCCG
GGGCTGGTGCGCCCAACCGTTACAACTGCCAAGGGCGTTGTCACGCCGAA
TTGAGGAGTACCGCCCTTCACTATGCCGCTGAGGGTGGTCACGTTGGAGT
TATCATAGCCCTGCTGAGCGCTGGCTTCTGCAACGGTCAGCCCGACGAGA
CCGGTGTAACCGCAGCCGAGATATCCGCCAGAGTGGGGCACGAGTCATCA
CGGGAAGCCACCCGTCGGCTCCTAGGCGGTGACAGAGGGGGCAAGCTGGT
CTACGACTACGTCAACATGGTCAGCCAGGACGTGGCTACCGTGTGCGGTC
TGGCCCAAGGCGGGGCGTTTCTGGATTGGCAGGACAACCACAGGAGACGC
TCTCCGTTGCACCGGGCGGTGTACTTTGGGCACTTTCAGATTCTCAAGAT
CCTACTCGCTGCTGGCGCCAACCCAAACGTCGCCGACAACCATGCCGTTA
CCCCGTTGCATATGGTTGCCGTCAAGGGATGCGAGGCTGAGGCTGCCGAA
CTGCTCTGTGCCGGAGCAGATACGCATGCACGCACGGATGACAGCTATAC
GCCGCTACATCTGGCCGTCGTCTACAACAGGATTGGTGTCACGAGGCTAC
TCCTAGACGCTTCGGCATCCTCCCTCGAAGTCCGCGATAGTTTCCACGGT
ATCACGCCGCTCGCATGGGCGTCCAAGCTCTCCTTCACTACCATGCTGCG
CATTTTGCTGAGTATGGGAGCCGACGTCAACTCTAGGTCTCCAGCGGGCT
TGACCCCCCTCCACTGGGCGTGCCGCTTCAACAGTGCTGACATCGTCGAG
TGCTTGCTATTAGCGGGAGCCGATCCCGACTCTTTGGATAACGAGGGTGC
CGACGCTGGCTCTGTGACTGGCCTTGGCGACCCTCCCGGCCATACGGGAC
CTCAAAGCCCACCCATTCTTCCTGGAGCGGCGAATCAAACCGGCCGGCCA
AAGAACGGAGCGTTGGCGACCCGCATTCAGCTGGCTCTGTCGAAGGCCAG
GAAGGATCGCACTTGGCGTCGTCGGGGCTGGTTGGTCGTGCTGGCTAGGA
GGCAAGCGATGACGATGGCTGTGGTGCCTGGCACTACTTCCAGAGCTTCG
AAGACTTACGTGCGTGGCAACCAGGGGCATCCTAGGATGACCATACCAAG
GATTCCGGTGATGACAGGTGTGGACGGAAAGATGGTCGTTGAGGATCTCA
CTGGTGCCGACCAGAAACGGACCCGAGTGGCCAACGAAACCTTCAGCGCT
GACGGCGGAGGGGCCGAAACCTGCCGTAAAGAAAACCCCGACCTGCACTG
TAAGCAAACAAGCATCGTCCGTGGGGAGGGGGCGTCTTCCTTCCACCGAT
TTTTCGATGGCACTGGCACCAATTTCACCTCACTGCTATCAGCGCCATCC
TCGGCTCAGCTCGGTTCGACTGGTGGCGATATCACCGGCTACGTCGGCAG
TGGCACTGGCTGGGCGCCTGAACGGGGGGCTATTGAGACTTTGCTCTGGC
TGGCTGCTATGGAAGAGGGTGTTTTCCGTAATGTGATGCGCTTTGTTTAG
CGGGGTAAAACGTAGATTTACAGGGAGGGCCCGACGTCGGTCAGGCGAAC
GTTTAGGTGGAGCACTCACTTCATGGACCGACTAATATGA
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protein sequence of EsuBft90_26a-0001

>EsuBft90_26 ID=EsuBft90_26|Name=EsuBft90_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=661bp
MARTSEAIPPGFHTYDPRQWVIRHQRLVSQIFAPSEIEGFSTVTDKSMNS
TPIGEAGEIIHCAASQGLTFAVQALLAERRTACDAKDRFGKTPLHWAAGQ
GHVDTVLALVNAGALVDSRDHFNATPLMLAALGGHEHVVHCLLYAGAGAP
NRYNCQGRCHAELRSTALHYAAEGGHVGVIIALLSAGFCNGQPDETGVTA
AEISARVGHESSREATRRLLGGDRGGKLVYDYVNMVSQDVATVCGLAQGG
AFLDWQDNHRRRSPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHM
VAVKGCEAEAAELLCAGADTHARTDDSYTPLHLAVVYNRIGVTRLLLDAS
ASSLEVRDSFHGITPLAWASKLSFTTMLRILLSMGADVNSRSPAGLTPLH
WACRFNSADIVECLLLAGADPDSLDNEGADAGSVTGLGDPPGHTGPQSPP
ILPGAANQTGRPKNGALATRIQLALSKARKDRTWRRRGWLVVLARRQAMT
MAVVPGTTSRASKTYVRGNQGHPRMTIPRIPVMTGVDGKMVVEDLTGADQ
KRTRVANETFSADGGGAETCRKENPDLHCKQTSIVRGEGASSFHRFFDGT
GTNFTSLLSAPSSAQLGSTGGDITGYVGSGTGWAPERGAIETLLWLAAME
EGVFRNVMRFV
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mRNA from alignment at Scaffold_65:126288..129038+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft90_26a-0001 ID=EsuBft90_26a-0001|Name=EsuBft90_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2751bp|location=Sequence derived from alignment at Scaffold_65:126288..129038+ (Ectocarpus subulatus male Bft15b)
CGTCTCATGCGTCTCACCGGACAAACAATTTGAGCAGGCAAGTCAGTGAC
GTTGTGGAGAGGATCGCGCGATCGCCAACGGACAGAAAGTGGGTGGTCCC
CGCGACGTTGCTGTAGGAGGTCACGTGACGTAACCGGCAATGTTTATTGG
GAGCTCGTTCAATCCCGCCGGGGTGATATCCCAGTTTTTTTTGACGACGC
CAATCTCGTTGGATGGAGATACAAATGCTGATGTAGTCTAAGTCTAATCG
TGCGGTGTTGCTGTCGACCACACTCCATACAGAAGCGTTCAGGGAGAAGG
ATGGCACAAGTTGCCATGTTCCCGCTGTTGCCTCCTCCTCCGGGTTTCGG
TTGCCTTCTTGTAGAAGACATGCGAGCGGAATGAAGCACCTGTTTGTACA
GACAGTACAGTCCATCCTGCTCGTGGGGAATTGACTCACAAAATAGACGA
GCTCTCGGTGTGTACGGGTCGGGTAGTACAGTAGACTTTTAAGGATCATC
GTGCCATGCTGATTGCACCCACCCCTGATCTTCATAAATCTTATCCTTCC
CGCGGCCGCCCCTTGATGTGATTTTGCTCTTTCGTCTCCCTCCTTCGCGC
AGGGCCTCACTCTGTGCTTCCTGCGAGATCCTCATCATCTCCGTAACATC
TCCGAACCACCAGCAAGACACGCGCATGGCGAGAACATCAGAAGCAATTC
CTCCTGGCTTCCACACTTACGATCCGCGCCAATGGGTAATTCGCCATCAA
CGGCTAGTTTCGCAGATATTCGCACCATCAGAGATTGAGGGTTTTTCTAC
CGTGACAGATAAGTCGATGAACAGCACTCCAATCGGAGAAGCAGGCGAGA
TAATTCACTGTGCCGCCTCGCAGGGCCTCACTTTCGCCGTCCAAGCCTTG
CTTGCAGAACGGCGTACCGCCTGTGACGCAAAAGATCGCTTCGGCAAAAC
TCCTCTTCACTGGGCTGCCGGACAAGGACACGTCGACACTGTCTTGGCGC
TCGTGAATGCCGGAGCCTTGGTCGACTCTCGCGACCATTTCAACGCCACA
CCACTCATGCTCGCGGCCTTGGGAGGGCACGAGCACGTCGTTCACTGTCT
GCTGTATGCCGGGGCTGGTGCGCCCAACCGTTACAACTGCCAAGGGCGTT
GTCACGCCGAATTGAGGAGTACCGCCCTTCACTATGCCGCTGAGGGTGGT
CACGTTGGAGTTATCATAGCCCTGCTGAGCGCTGGCTTCTGCAACGGTCA
GCCCGACGAGACCGGTGTAACCGCAGCCGAGATATCCGCCAGAGTGGGGC
ACGAGTCATCACGGGAAGCCACCCGTCGGCTCCTAGGCGGTGACAGAGGG
GGCAAGCTGGTCTACGACTACGTCAACATGGTCAGCCAGGACGTGGCTAC
CGTGTGCGGTCTGGCCCAAGGCGGGGCGTTTCTGGATTGGCAGGACAACC
ACAGGAGACGCTCTCCGTTGCACCGGGCGGTGTACTTTGGGCACTTTCAG
ATTCTCAAGATCCTACTCGCTGCTGGCGCCAACCCAAACGTCGCCGACAA
CCATGCCGTTACCCCGTTGCATATGGTTGCCGTCAAGGGATGCGAGGCTG
AGGCTGCCGAACTGCTCTGTGCCGGAGCAGATACGCATGCACGCACGGAT
GACAGCTATACGCCGCTACATCTGGCCGTCGTCTACAACAGGATTGGTGT
CACGAGGCTACTCCTAGACGCTTCGGCATCCTCCCTCGAAGTCCGCGATA
GTTTCCACGGTATCACGCCGCTCGCATGGGCGTCCAAGCTCTCCTTCACT
ACCATGCTGCGCATTTTGCTGAGTATGGGAGCCGACGTCAACTCTAGGTC
TCCAGCGGGCTTGACCCCCCTCCACTGGGCGTGCCGCTTCAACAGTGCTG
ACATCGTCGAGTGCTTGCTATTAGCGGGAGCCGATCCCGACTCTTTGGAT
AACGAGGGTGCCGACGCTGGCTCTGTGACTGGCCTTGGCGACCCTCCCGG
CCATACGGGACCTCAAAGCCCACCCATTCTTCCTGGAGCGGCGAATCAAA
CCGGCCGGCCAAAGAACGGAGCGTTGGCGACCCGCATTCAGCTGGCTCTG
TCGAAGGCCAGGAAGGATCGCACTTGGCGTCGTCGGGGCTGGTTGGTCGT
GCTGGCTAGGAGGCAAGCGATGACGATGGCTGTGGTGCCTGGCACTACTT
CCAGAGCTTCGAAGACTTACGTGCGTGGCAACCAGGGGCATCCTAGGATG
ACCATACCAAGGATTCCGGTGATGACAGGTGTGGACGGAAAGATGGTCGT
TGAGGATCTCACTGGTGCCGACCAGAAACGGACCCGAGTGGCCAACGAAA
CCTTCAGCGCTGACGGCGGAGGGGCCGAAACCTGCCGTAAAGAAAACCCC
GACCTGCACTGTAAGCAAACAAGCATCGTCCGTGGGGAGGGGGCGTCTTC
CTTCCACCGATTTTTCGATGGCACTGGCACCAATTTCACCTCACTGCTAT
CAGCGCCATCCTCGGCTCAGCTCGGTTCGACTGGTGGCGATATCACCGGC
TACGTCGGCAGTGGCACTGGCTGGGCGCCTGAACGGGGGGCTATTGAGAC
TTTGCTCTGGCTGGCTGCTATGGAAGAGGGTGTTTTCCGTAATGTGATGC
GCTTTGTTTAGCGGGGTAAAACGTAGATTTACAGGGAGGGCCCGACGTCG
GTCAGGCGAACGTTTAGGTGGAGCACTCACTTCATGGACCGACTAATATG
A
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Coding sequence (CDS) from alignment at Scaffold_65:126288..129038+

>EsuBft90_26a-0001 ID=EsuBft90_26a-0001|Name=EsuBft90_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1986bp|location=Sequence derived from alignment at Scaffold_65:126288..129038+ (Ectocarpus subulatus male Bft15b)
ATGGCGAGAACATCAGAAGCAATTCCTCCTGGCTTCCACACTTACGATCC
GCGCCAATGGGTAATTCGCCATCAACGGCTAGTTTCGCAGATATTCGCAC
CATCAGAGATTGAGGGTTTTTCTACCGTGACAGATAAGTCGATGAACAGC
ACTCCAATCGGAGAAGCAGGCGAGATAATTCACTGTGCCGCCTCGCAGGG
CCTCACTTTCGCCGTCCAAGCCTTGCTTGCAGAACGGCGTACCGCCTGTG
ACGCAAAAGATCGCTTCGGCAAAACTCCTCTTCACTGGGCTGCCGGACAA
GGACACGTCGACACTGTCTTGGCGCTCGTGAATGCCGGAGCCTTGGTCGA
CTCTCGCGACCATTTCAACGCCACACCACTCATGCTCGCGGCCTTGGGAG
GGCACGAGCACGTCGTTCACTGTCTGCTGTATGCCGGGGCTGGTGCGCCC
AACCGTTACAACTGCCAAGGGCGTTGTCACGCCGAATTGAGGAGTACCGC
CCTTCACTATGCCGCTGAGGGTGGTCACGTTGGAGTTATCATAGCCCTGC
TGAGCGCTGGCTTCTGCAACGGTCAGCCCGACGAGACCGGTGTAACCGCA
GCCGAGATATCCGCCAGAGTGGGGCACGAGTCATCACGGGAAGCCACCCG
TCGGCTCCTAGGCGGTGACAGAGGGGGCAAGCTGGTCTACGACTACGTCA
ACATGGTCAGCCAGGACGTGGCTACCGTGTGCGGTCTGGCCCAAGGCGGG
GCGTTTCTGGATTGGCAGGACAACCACAGGAGACGCTCTCCGTTGCACCG
GGCGGTGTACTTTGGGCACTTTCAGATTCTCAAGATCCTACTCGCTGCTG
GCGCCAACCCAAACGTCGCCGACAACCATGCCGTTACCCCGTTGCATATG
GTTGCCGTCAAGGGATGCGAGGCTGAGGCTGCCGAACTGCTCTGTGCCGG
AGCAGATACGCATGCACGCACGGATGACAGCTATACGCCGCTACATCTGG
CCGTCGTCTACAACAGGATTGGTGTCACGAGGCTACTCCTAGACGCTTCG
GCATCCTCCCTCGAAGTCCGCGATAGTTTCCACGGTATCACGCCGCTCGC
ATGGGCGTCCAAGCTCTCCTTCACTACCATGCTGCGCATTTTGCTGAGTA
TGGGAGCCGACGTCAACTCTAGGTCTCCAGCGGGCTTGACCCCCCTCCAC
TGGGCGTGCCGCTTCAACAGTGCTGACATCGTCGAGTGCTTGCTATTAGC
GGGAGCCGATCCCGACTCTTTGGATAACGAGGGTGCCGACGCTGGCTCTG
TGACTGGCCTTGGCGACCCTCCCGGCCATACGGGACCTCAAAGCCCACCC
ATTCTTCCTGGAGCGGCGAATCAAACCGGCCGGCCAAAGAACGGAGCGTT
GGCGACCCGCATTCAGCTGGCTCTGTCGAAGGCCAGGAAGGATCGCACTT
GGCGTCGTCGGGGCTGGTTGGTCGTGCTGGCTAGGAGGCAAGCGATGACG
ATGGCTGTGGTGCCTGGCACTACTTCCAGAGCTTCGAAGACTTACGTGCG
TGGCAACCAGGGGCATCCTAGGATGACCATACCAAGGATTCCGGTGATGA
CAGGTGTGGACGGAAAGATGGTCGTTGAGGATCTCACTGGTGCCGACCAG
AAACGGACCCGAGTGGCCAACGAAACCTTCAGCGCTGACGGCGGAGGGGC
CGAAACCTGCCGTAAAGAAAACCCCGACCTGCACTGTAAGCAAACAAGCA
TCGTCCGTGGGGAGGGGGCGTCTTCCTTCCACCGATTTTTCGATGGCACT
GGCACCAATTTCACCTCACTGCTATCAGCGCCATCCTCGGCTCAGCTCGG
TTCGACTGGTGGCGATATCACCGGCTACGTCGGCAGTGGCACTGGCTGGG
CGCCTGAACGGGGGGCTATTGAGACTTTGCTCTGGCTGGCTGCTATGGAA
GAGGGTGTTTTCCGTAATGTGATGCGCTTTGTTTAG
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