EsuBft90_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft90_23a-0001
Unique NameEsuBft90_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_65contigScaffold_65:151284..152363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G7M1
ProteomeIdEsuBft90_23
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length68
Hectar predicted targeting categoryother localisation
Evalue2.17e-102
EggNOG OGs28IT0@1|root,2QR4A@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameCEP164
KEGG koko:K16462
GOsGO:0000086,GO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0032991,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0050789,GO:0050794,GO:0051179,GO:0051640,GO:0051641,GO:0051726,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0097539,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901987,GO:1901990,GO:1902749,GO:1903047
Descriptioncilium assembly
COG categoryA
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft90_23aEsuBft90_23aEctocarpus subulatus male Bft15bgeneScaffold_65 151284..152363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_23a-0001-exonEsuBft90_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_65 151284..151353 -
EsuBft90_23a-0001-exonagat-exon-75608Ectocarpus subulatus male Bft15bexonScaffold_65 151410..151981 -
EsuBft90_23a-0001-exonagat-exon-75609Ectocarpus subulatus male Bft15bexonScaffold_65 152322..152363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_23a-0001-cdsEsuBft90_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_65 151284..151353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_23a-0001EsuBft90_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_65 151284..152363 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft90_23a-0001 ID=EsuBft90_23a-0001|Name=EsuBft90_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=684bp|location=Sequence derived from alignment at Scaffold_65:151284..152363- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGGGCGCCCATCATGATGTGCAGACAACCGTGCGCGGTACTTGG
GCAGGTTGAGGCACACATAAACGCACTTCGGGCACAGCTAAAGCATGAAA
CACCTGACCCGGATTCCATCACGGGCAATGGAGGCCCTAATCCTGGTGGC
GGGGTGGGCCTGAGCTCGACCCCGTCGGGTGGTACTCGGATGCCTGGGCA
CTCGGTATCGACAGCGGGTGCGGCGGAAACTGTCGAAGTCCCACTACCCG
TGGAAACCCGAGGCAATTACCATCATCCGCCGCCGACCCCCCGTGAACGT
AGCGGCAATGAAGACGGGCTAACGGAACGAGAAGACATGCGTCTAAACCG
TCTGTTGCGCTCGAGCAATTCCTCCGCGCTATCGTCACCGCCACCAACCC
CGGGTGACGTGATGGCACCGACTAGCGCGCACCGGAGGGCGGAACAAAAC
GAACAGCGGAGCCTAACTACGGCAACGCCAGGCGGCCACAACAACGGCGC
TTCGGGCGGAGAAGGATCAGCGAGGAGAGTGGGCGAAGGTGACGCCGAAC
ATCAGGACCGCTATGCGATAGGAGGCGCCACGGATGGCGGCTTTAGTGAC
CTGTCCCGCGAGCTGACGATTGGGAGAGGCCAGGGACAACGGTGGCTACA
CAGCTACGCCTCGATTCGGGTCGTTGGCGGGTGA
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protein sequence of EsuBft90_23a-0001

>EsuBft90_23 ID=EsuBft90_23|Name=EsuBft90_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=227bp
MDGAPIMMCRQPCAVLGQVEAHINALRAQLKHETPDPDSITGNGGPNPGG
GVGLSSTPSGGTRMPGHSVSTAGAAETVEVPLPVETRGNYHHPPPTPRER
SGNEDGLTEREDMRLNRLLRSSNSSALSSPPPTPGDVMAPTSAHRRAEQN
EQRSLTTATPGGHNNGASGGEGSARRVGEGDAEHQDRYAIGGATDGGFSD
LSRELTIGRGQGQRWLHSYASIRVVGG
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mRNA from alignment at Scaffold_65:151284..152363-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft90_23a-0001 ID=EsuBft90_23a-0001|Name=EsuBft90_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1080bp|location=Sequence derived from alignment at Scaffold_65:151284..152363- (Ectocarpus subulatus male Bft15b)
ATGGACGGGGCGCCCATCATGATGTGCAGACAACCGTGCGCGGTTTCATG
GTGTCTCGCGGTCCATAGTCTACTCGGTTCAAGAGAGGAAGCACAGGGTT
CAATGTAACCACGTTCGAGTTCTAGGATCACTTGAGCACGACAAGTACTA
CATAAGAACTCAAACCGTCCAAATAGCGACGTCAGTCGGTTTCTAGTCAA
GGGATGCAATCATGACGGATTCCCTGCTACAGGAGTGCCAAAACTCTACG
ATGTCTTTTACCCCAGCCCGCCGCCTTCGATATGAAACCAATTTAGGTGC
GTACGGCGGTGCAAGACGTTCGCAACCCCAACAGCACCCTACCCCGTCCC
CAACCCGAGTCCCCTCCTTTCACCTCCCGCAGGTACTTGGGCAGGTTGAG
GCACACATAAACGCACTTCGGGCACAGCTAAAGCATGAAACACCTGACCC
GGATTCCATCACGGGCAATGGAGGCCCTAATCCTGGTGGCGGGGTGGGCC
TGAGCTCGACCCCGTCGGGTGGTACTCGGATGCCTGGGCACTCGGTATCG
ACAGCGGGTGCGGCGGAAACTGTCGAAGTCCCACTACCCGTGGAAACCCG
AGGCAATTACCATCATCCGCCGCCGACCCCCCGTGAACGTAGCGGCAATG
AAGACGGGCTAACGGAACGAGAAGACATGCGTCTAAACCGTCTGTTGCGC
TCGAGCAATTCCTCCGCGCTATCGTCACCGCCACCAACCCCGGGTGACGT
GATGGCACCGACTAGCGCGCACCGGAGGGCGGAACAAAACGAACAGCGGA
GCCTAACTACGGCAACGCCAGGCGGCCACAACAACGGCGCTTCGGGCGGA
GAAGGATCAGCGAGGAGAGTGGGCGAAGGTGACGCCGAACATCAGGACCG
CTATGCGATAGGAGGCGCCACGGATGGCGGCTTTAGTGACCTGTCCCGCG
AGCTGTTCGCCGCCAGTCCTACGGATGGAACCGGGCGTTCCAGTGGTGAC
AAGCTGGCAGGACGATTGGGAGAGGCCAGGGACAACGGTGGCTACACAGC
TACGCCTCGATTCGGGTCGTTGGCGGGTGA
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Coding sequence (CDS) from alignment at Scaffold_65:151284..152363-

>EsuBft90_23a-0001 ID=EsuBft90_23a-0001|Name=EsuBft90_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=684bp|location=Sequence derived from alignment at Scaffold_65:151284..152363- (Ectocarpus subulatus male Bft15b)
ATGGACGGGGCGCCCATCATGATGTGCAGACAACCGTGCGCGGTACTTGG
GCAGGTTGAGGCACACATAAACGCACTTCGGGCACAGCTAAAGCATGAAA
CACCTGACCCGGATTCCATCACGGGCAATGGAGGCCCTAATCCTGGTGGC
GGGGTGGGCCTGAGCTCGACCCCGTCGGGTGGTACTCGGATGCCTGGGCA
CTCGGTATCGACAGCGGGTGCGGCGGAAACTGTCGAAGTCCCACTACCCG
TGGAAACCCGAGGCAATTACCATCATCCGCCGCCGACCCCCCGTGAACGT
AGCGGCAATGAAGACGGGCTAACGGAACGAGAAGACATGCGTCTAAACCG
TCTGTTGCGCTCGAGCAATTCCTCCGCGCTATCGTCACCGCCACCAACCC
CGGGTGACGTGATGGCACCGACTAGCGCGCACCGGAGGGCGGAACAAAAC
GAACAGCGGAGCCTAACTACGGCAACGCCAGGCGGCCACAACAACGGCGC
TTCGGGCGGAGAAGGATCAGCGAGGAGAGTGGGCGAAGGTGACGCCGAAC
ATCAGGACCGCTATGCGATAGGAGGCGCCACGGATGGCGGCTTTAGTGAC
CTGTCCCGCGAGCTGACGATTGGGAGAGGCCAGGGACAACGGTGGCTACA
CAGCTACGCCTCGATTCGGGTCGTTGGCGGGTGA
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