EsuBft90_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft90_22a-0001
Unique Name	EsuBft90_22a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_65	contig	Scaffold_65:153986..156359 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	53485.EFQ92326
ProteomeId	EsuBft90_22
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	2
Max annot lvl	4751\|Fungi
Length	2174
Evalue	1.14e-05
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3NUZ7@4751\|Fungi,3QNZW@4890\|Ascomycota,2061J@147541\|Dothideomycetes
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft90_22a	EsuBft90_22a	Ectocarpus subulatus male Bft15b	gene	Scaffold_65 153986..156359 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_22a-0001-exon	agat-exon-75607	Ectocarpus subulatus male Bft15b	exon	Scaffold_65 153986..155084 -
EsuBft90_22a-0001-exon	EsuBft90_22a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_65 155285..156359 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_22a-0001-exon	agat-three_prime_utr-22972	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_65 153986..154830 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_22a-0001-cds	EsuBft90_22a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_65 154831..155084 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_22a-0001-exon	agat-five_prime_utr-14917	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_65 156324..156359 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_22a-0001	EsuBft90_22	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_65 154831..156323 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_65:153986..156359-
coding sequence from alignment at Scaffold_65:153986..156359-

spliced messenger RNA

>EsuBft90_22a-0001 ID=EsuBft90_22a-0001|Name=EsuBft90_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2174bp|location=Sequence derived from alignment at Scaffold_65:153986..156359- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTACGTCCAAAACGGTTTCCGCACACACACCGAACATGCCTGTGCCGCA
ATTGCTCCTGGCAACGCGAAAGCGCCCAGCACCCCCGTTGANCCCGGTTG
ACATCAACGATTTCCACTGCGCGCACGGCCACGCCCAAGAGGTGCTGCTG
AGGACCACGGCGAAGCAGCAGGGGACGACGCTGGTGGGCGAGCTCCGGGA
GTACCTGGGGTGCTCGAAGGCGAACGGGCTTTCCAAGCCCATCCCCAACA
AGACGTCGACCCGAGCATCGCTGCCTCCCATCGCAGAGGAGGAAGAGGAA
TTCGTGACTGGAGAGGACGAGATTGGGGAGGGCGCGTCGAGCCAAGGTGG
ACGGAGGGCGGAGGGAGAACCTGTGGATGGAGGACCAGGTTTCAACCTTG
GCACGACGGCAGCCCCGGGGCCCGCGGGGCCGCCCGCGCGCATAGCGCCG
GCGGCGCCACCGGCTGCGCCCCCGGCTGCGCCCCAGGAGTCGGGCGCGGG
CGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGGGCGCGAGCGTCGCCC
CATCTACCACGTCGAACGGCACGGCCGATGTGGGCGGCGGCGAGGACGAC
CGCCGCAGCAGCAGCAGCCGCGGTAGCGGCAGCAGCAGCGGCGACGACGG
CGGCAGCGACAGCAGCAGCGGCAGCGACAGCGAGACGGACCTCCCGGCGC
TCCGTGGGCCAGAGGCCCGGCGGCTCGCCCTCTTCGACAAGCCGGCGGAA
CTAACCAGCCGCCGAACCAGGGAGAACCCTCGCCGAAACCCGAGGTACGA
GTCGCCCCCGTCGCCGACAAGTGCCGAAGCCTTGCTCGCTTCGGCAGCGA
GCCTGCCCGTCAGCATCACGGAGGAGTTCACCATCTGGATACTCTCGGCG
GTACTTCACGTGGCGTTAGGGCTAGAAGCGAGGGCGGTGCGAGAGTTGCT
GTTCGAGCGCGCGGAAGAGGCCCACGCTGCGCGCCAAGAGGCGGAGGACT
TCCTGCTGGGTGCGGTGGACCTTATGCTCATCTCGCCAGACGCCTTCGAG
ACGGCTCTGGCATCCCACGAGCTAAGGGACCTGGGCATCACCTACCAACG
GGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCAAGACAGAGA
GCATCGTGTCTTTGTCTTCGACGGAAGCCGAGTACATTGCTGCCGGGGAG
GGCGTCAAGGAGGCGTTGTTTGTCCGTGCTGTGCTTTCGTTTGTTGCCCC
AGAGACCAGACGTAACAACATCCAGGTCCTTGAGGACAACCAGGGGGCCA
TAGCGTTGGTGCAGAACCCCCTCAGCTAAGGTCGCACGAAACACATCGAC
GTGAGGTTCCATCTCATCCGCGGATTGTTTAGGTCGGGGGATATTTCGGT
CAAATTCGTTCCGACAACGGAGCAACACGCGGACCTCCTAACCAAGGCCC
TTAGCAGGGGTAGTCTGCAGTACCACCGGCGCAAGTTGATGAATTTGCCG
GAGTAGCTGTAGCAGTTTCTAGCAATTGGGATCGGTCATGTTTTCAATGC
GGGGAAAGGCGCATAACTGTTGCGGTCTGTGTACCAATGGCAGGAGTAGG
GGGCGTTGGGAGACCATCGTCCGGGGGAACGTAGTTCCTCGCGTTCTTGT
CTTCGCCTTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTCATCCGCG
GATTGTTTAGGTCGGGGGATATTTCGGTCAAATTCGTTCCGACAACGGAG
CAACACGCGGACCTCCTAACCAAGGCCCTTAGCAGGGGTAGTCTGCAGTA
CCACCGGCGCAAGTTGATGAATTTGCCGGAGTAGCTGTAGCAGTTTCTAG
CACTTGGGAGAGGCCATGTTTTCCATGCGGGGAAAGGCGCATAACTGTTG
CGGTCTGTGTACCAATGGCAGGAGTAGGGGGCGTTGGGAGACCATCGTCC
GGGGGAACGTAGTTCCTCGCGTTCTTGTCTTCGCCTTGGCCATTCTAATA
AGTGCGGCCGTTGTGATCCGCTGTGATAGCGACGGCTTTTGTGGTGGTAG
GGTTTTTTTCGACGGGTTTTGCCT

protein sequence of EsuBft90_22a-0001

>EsuBft90_22 ID=EsuBft90_22|Name=EsuBft90_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=430bp
MPVPQLLLATRKRPAPPLXPVDINDFHCAHGHAQEVLLRTTAKQQGTTLV
GELREYLGCSKANGLSKPIPNKTSTRASLPPIAEEEEEFVTGEDEIGEGA
SSQGGRRAEGEPVDGGPGFNLGTTAAPGPAGPPARIAPAAPPAAPPAAPQ
ESGAGDAGDGAPSSREGASVAPSTTSNGTADVGGGEDDRRSSSSRGSGSS
SGDDGGSDSSSGSDSETDLPALRGPEARRLALFDKPAELTSRRTRENPRR
NPRYESPPSPTSAEALLASAASLPVSITEEFTIWILSAVLHVALGLEARA
VRELLFERAEEAHAARQEAEDFLLGAVDLMLISPDAFETALASHELRDLG
ITYQRATTVGGTVVSHGSKTESIVSLSSTEAEYIAAGEGVKEALFVRAVL
SFVAPETRRNNIQVLEDNQGAIALVQNPLS

mRNA from alignment at Scaffold_65:153986..156359-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft90_22a-0001 ID=EsuBft90_22a-0001|Name=EsuBft90_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2374bp|location=Sequence derived from alignment at Scaffold_65:153986..156359- (Ectocarpus subulatus male Bft15b)
TGTACGTCCAAAACGGTTTCCGCACACACACCGAACATGCCTGTGCCGCA
ATTGCTCCTGGCAACGCGAAAGCGCCCAGCACCCCCGTTGANCCCGGTTG
ACATCAACGATTTCCACTGCGCGCACGGCCACGCCCAAGAGGTGCTGCTG
AGGACCACGGCGAAGCAGCAGGGGACGACGCTGGTGGGCGAGCTCCGGGA
GTACCTGGGGTGCTCGAAGGCGAACGGGCTTTCCAAGCCCATCCCCAACA
AGACGTCGACCCGAGCATCGCTGCCTCCCATCGCAGAGGAGGAAGAGGAA
TTCGTGACTGGAGAGGACGAGATTGGGGAGGGCGCGTCGAGCCAAGGTGG
ACGGAGGGCGGAGGGAGAACCTGTGGATGGAGGACCAGGTTTCAACCTTG
GCACGACGGCAGCCCCGGGGCCCGCGGGGCCGCCCGCGCGCATAGCGCCG
GCGGCGCCACCGGCTGCGCCCCCGGCTGCGCCCCAGGAGTCGGGCGCGGG
CGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGGGCGCGAGCGTCGCCC
CATCTACCACGTCGAACGGCACGGCCGATGTGGGCGGCGGCGAGGACGAC
CGCCGCAGCAGCAGCAGCCGCGGTAGCGGCAGCAGCAGCGGCGACGACGG
CGGCAGCGACAGCAGCAGCGGCAGCGACAGCGAGACGGACCTCCCGGCGC
TCCGTGGGCCAGAGGCCCGGCGGCTCGCCCTCTTCGACAAGCCGGCGGAA
CTAACCAGCCGCCGAACCAGGGAGAACCCTCGCCGAAACCCGAGGTACGA
GTCGCCCCCGTCGCCGACAAGTGCCGAAGCCTTGCTCGCTTCGGCAGCGA
GCCTGCCCGTCAGCATCACGGAGGAGTTCACCATCTGGATACTCTCGGCG
GTACTTCACGTGGCGTTAGGGCTAGAAGCGAGGGCGGTGCGAGAGTTGCT
GTTCGAGCGCGCGGAAGAGGCCCACGCTGCGCGCCAAGAGGCGGAGGACT
TCCTGCTGGGTGCGGTGGACCTTATGCTCATCTCGCCAGACGCCTTCGAG
ACGGCTCTGGCATCCCACGAGCTAAGTGAATTGCCCATAGGACCGAAGCG
AGATGACTAGAAGGGAGGGGAGTGGCCGGTGAGGGAGGTCATCGGCAACA
TGATGTGGGTGTCAACGTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCAT
GCGGTAGCGCGCCACGCCCACGCCCCGGCAAATAGGCACTGGGATGCCAT
CTAGAAGATCCTCGGCTACTTGAAGGGGACCTGGGCATCACCTACCAACG
GGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCAAGACAGAGA
GCATCGTGTCTTTGTCTTCGACGGAAGCCGAGTACATTGCTGCCGGGGAG
GGCGTCAAGGAGGCGTTGTTTGTCCGTGCTGTGCTTTCGTTTGTTGCCCC
AGAGACCAGACGTAACAACATCCAGGTCCTTGAGGACAACCAGGGGGCCA
TAGCGTTGGTGCAGAACCCCCTCAGCTAAGGTCGCACGAAACACATCGAC
GTGAGGTTCCATCTCATCCGCGGATTGTTTAGGTCGGGGGATATTTCGGT
CAAATTCGTTCCGACAACGGAGCAACACGCGGACCTCCTAACCAAGGCCC
TTAGCAGGGGTAGTCTGCAGTACCACCGGCGCAAGTTGATGAATTTGCCG
GAGTAGCTGTAGCAGTTTCTAGCAATTGGGATCGGTCATGTTTTCAATGC
GGGGAAAGGCGCATAACTGTTGCGGTCTGTGTACCAATGGCAGGAGTAGG
GGGCGTTGGGAGACCATCGTCCGGGGGAACGTAGTTCCTCGCGTTCTTGT
CTTCGCCTTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTCATCCGCG
GATTGTTTAGGTCGGGGGATATTTCGGTCAAATTCGTTCCGACAACGGAG
CAACACGCGGACCTCCTAACCAAGGCCCTTAGCAGGGGTAGTCTGCAGTA
CCACCGGCGCAAGTTGATGAATTTGCCGGAGTAGCTGTAGCAGTTTCTAG
CACTTGGGAGAGGCCATGTTTTCCATGCGGGGAAAGGCGCATAACTGTTG
CGGTCTGTGTACCAATGGCAGGAGTAGGGGGCGTTGGGAGACCATCGTCC
GGGGGAACGTAGTTCCTCGCGTTCTTGTCTTCGCCTTGGCCATTCTAATA
AGTGCGGCCGTTGTGATCCGCTGTGATAGCGACGGCTTTTGTGGTGGTAG
GGTTTTTTTCGACGGGTTTTGCCT

Coding sequence (CDS) from alignment at Scaffold_65:153986..156359-

>EsuBft90_22a-0001 ID=EsuBft90_22a-0001|Name=EsuBft90_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1293bp|location=Sequence derived from alignment at Scaffold_65:153986..156359- (Ectocarpus subulatus male Bft15b)
ATGCCTGTGCCGCAATTGCTCCTGGCAACGCGAAAGCGCCCAGCACCCCC
GTTGANCCCGGTTGACATCAACGATTTCCACTGCGCGCACGGCCACGCCC
AAGAGGTGCTGCTGAGGACCACGGCGAAGCAGCAGGGGACGACGCTGGTG
GGCGAGCTCCGGGAGTACCTGGGGTGCTCGAAGGCGAACGGGCTTTCCAA
GCCCATCCCCAACAAGACGTCGACCCGAGCATCGCTGCCTCCCATCGCAG
AGGAGGAAGAGGAATTCGTGACTGGAGAGGACGAGATTGGGGAGGGCGCG
TCGAGCCAAGGTGGACGGAGGGCGGAGGGAGAACCTGTGGATGGAGGACC
AGGTTTCAACCTTGGCACGACGGCAGCCCCGGGGCCCGCGGGGCCGCCCG
CGCGCATAGCGCCGGCGGCGCCACCGGCTGCGCCCCCGGCTGCGCCCCAG
GAGTCGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGGG
CGCGAGCGTCGCCCCATCTACCACGTCGAACGGCACGGCCGATGTGGGCG
GCGGCGAGGACGACCGCCGCAGCAGCAGCAGCCGCGGTAGCGGCAGCAGC
AGCGGCGACGACGGCGGCAGCGACAGCAGCAGCGGCAGCGACAGCGAGAC
GGACCTCCCGGCGCTCCGTGGGCCAGAGGCCCGGCGGCTCGCCCTCTTCG
ACAAGCCGGCGGAACTAACCAGCCGCCGAACCAGGGAGAACCCTCGCCGA
AACCCGAGGTACGAGTCGCCCCCGTCGCCGACAAGTGCCGAAGCCTTGCT
CGCTTCGGCAGCGAGCCTGCCCGTCAGCATCACGGAGGAGTTCACCATCT
GGATACTCTCGGCGGTACTTCACGTGGCGTTAGGGCTAGAAGCGAGGGCG
GTGCGAGAGTTGCTGTTCGAGCGCGCGGAAGAGGCCCACGCTGCGCGCCA
AGAGGCGGAGGACTTCCTGCTGGGTGCGGTGGACCTTATGCTCATCTCGC
CAGACGCCTTCGAGACGGCTCTGGCATCCCACGAGCTAAGGGACCTGGGC
ATCACCTACCAACGGGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGG
TAGCAAGACAGAGAGCATCGTGTCTTTGTCTTCGACGGAAGCCGAGTACA
TTGCTGCCGGGGAGGGCGTCAAGGAGGCGTTGTTTGTCCGTGCTGTGCTT
TCGTTTGTTGCCCCAGAGACCAGACGTAACAACATCCAGGTCCTTGAGGA
CAACCAGGGGGCCATAGCGTTGGTGCAGAACCCCCTCAGCTAA