EsuBft90_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft90_19a-0001
Unique NameEsuBft90_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_65contigScaffold_65:188098..190108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G7M3
ProteomeIdEsuBft90_19
Protein domainsPTHR24198
Protein domainsIPR002110
Protein domainsIPR020683
Ownerapollo_admin@sb-roscoff.fr
Noteankyrin-2 os:mus musculus gn:ank2 pe:1 sv:2 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1956
Hectar predicted targeting categoryother localisation
Evalue5.66e-246
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-22_001840.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameASB7
KEGG koko:K10329
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Descriptionspectrin binding
COG categoryI
BRITEko00000,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0086065
GO0032414
GO0008092
GO0072659
GO0050896
GO0051924
GO0043231
GO0098589
GO0055117
GO0045184
GO0005856
GO0016192
GO0007399
GO0016020
GO0048468
GO0044422
GO1902582
GO0044304
GO0086001
GO0044459
GO0019899
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft90_19aEsuBft90_19aEctocarpus subulatus male Bft15bgeneScaffold_65 188098..190108 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_19a-0001-exonagat-exon-75574Ectocarpus subulatus male Bft15bexonScaffold_65 188098..189170 -
EsuBft90_19a-0001-exonEsuBft90_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_65 189226..190108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_19a-0001-cdsEsuBft90_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_65 188098..189170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_19a-0001EsuBft90_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_65 188098..190108 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft90_19a-0001 ID=EsuBft90_19a-0001|Name=EsuBft90_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1956bp|location=Sequence derived from alignment at Scaffold_65:188098..190108- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGAACATCAGGAACGACTCCTCCTGGCTTCGACACTTGTGATCC
GCGCCAATGGGTGATTCGCCATCAACGGCTTGTTGCGCAGATATTCCCAC
GATCCGTGACGGATAAGTCGATGAACAGCACTCCAATCGGAGAAGCAGGC
GAGATAATTCACTGTGCCGCCTCGCAGGGCCTCACTTTCGCCGTCCAAGC
CTTGCTTGCAGAACGGCGTACCGCCTGTGACGCAAAAGATCGCTTCGGCA
AAACTCCTCTTCACTGGGCTGCCGGACAAGGACACGTCGACACTGTCTTG
GCGCTCGTGGATGCCGGAGCCTTGGTCGACTCTCGCGACCACTTCAAGGC
CACACCACTCATGCTCGCGGCCTTGGGGGGGCACGAGCACGTCATTCACT
GTCTGCTGTATGCCGGGGCTGGTGCTCCCAACCGTTACAACTGCCAAGGG
CGTTGTCACGCCGAATTGAGGAGTACCGCCCTTCACTATGCCGCTGAGGG
TGGTCACGTTGGAGTTATCGTAGCCCTGCTGAGCGCTGGCTTCTGCAACG
GTCAGCCCGACGAGACCGGTGTAACCGCAGCCGAGATATCCGCCAGAGTG
GGGCACGAGTCCTCACGGGAAGCCACCCGTCGGCTCCTAGGCGGTGACAG
AGGGGGCAAGCTGGTCTACGACTACGTCAACATGGTCAGCCAGGACGTGG
CTACCGTGTGCGGTCTGGCCCAAGGCGGGGCGTTTCTGGATTGGCAGGAC
AACCACAGGAGACGCTCTCCGTTGCACCGGGCGGTGTACTTTGGGCACTT
TCAGATTCTCAAGATTCTACTCGCTGCTGGCGCCAACCCAAACGTCGCCG
ACAACCATGCCGTTACCCCGTTGCATATATATGATACGCACGCACGCACG
GATGACAGCTATACGCCGCTACATCTGGCCGTCGTCTACAACAGGATTGG
TGTCACGAGGCTACTCCTAGACGCTTCGGCATCCTCCCTCGAAGTCCGCG
ATAGTTTCCACGGTATCACGCCGCTCGCATGGGCGTCCAAGTTCTCCTTC
GCTACCATGCTGCGCATTTTGCTGAGTATGGGAGCCGACGTCAACTCTAG
GTCTCCAGCGGGCTTGACCCCCCTCCATTGGGCGTGCCGCTTCAACAATG
CTGACATCGTCGAGTGCTTGCTGTTGGCGGGAGCCGACCCCGACTCTTTG
GATAACGAGGGTGCTGATGCCGGCTCTGCGATTGGTCTTGGTGACCCCCC
CCGCCACAAGGGACCCCAGAGCCCTCCCATTCTTCCAGGAGCGGTGAATC
GAACCGGCTGGCTAAAGAATGAAACGTTGGCGACCCGCATTCAGCTGGCT
CTGTCGAATGCGAGGAAGGATCGCACTTGGCGTCGTAGGGGCTGGTTGGT
CGTGCTGGCTAGGAGGCAAGCGATGGCGATGGCGGTGGTACCCGGCACTA
CTTCCAGAGCTTCCAAGACTTCCGTGAGTGGCAACAAGAGCGATTCTAAG
ATGACCATACCAAGGATTCTGGCGACGACAGGTGTGGACGCAGACACAGG
CCGCCGTGTGCATCTTGCCAGCCACCAGGAAGGGACTCGGCAGGGAATTG
TAAGGTCATCGAGCGATCTCCCTCACAGCAACGACGTCCCCGGTGGGTGG
TCACACGGAAACTTAGGCAACAGTGTGCCCCTTCAATCTAAGGGGAGCCA
CAACACCGCTATTTTCACGTCACAAATATCTGAATCATCATCGATGCAGC
TCGGGTGGGCTGGTGGAGGTAGCGCCGGCCACATCGACAAAGTCACTGGC
TGGACACCGGGGCAGGGAGTAGTACAGGCTCTGCTTGGGCTGGCAGCCGT
GGAAGTTGGTGTGTTTCGTGGTGTGATGCGCTACATATATATGAATGACA
TGTTGCTTACCGCAGATAGCGACGGTCCGCGCTGGCCACGCCGAGGTCTA
CTGTAG
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protein sequence of EsuBft90_19a-0001

>EsuBft90_19 ID=EsuBft90_19|Name=EsuBft90_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=651bp
MARTSGTTPPGFDTCDPRQWVIRHQRLVAQIFPRSVTDKSMNSTPIGEAG
EIIHCAASQGLTFAVQALLAERRTACDAKDRFGKTPLHWAAGQGHVDTVL
ALVDAGALVDSRDHFKATPLMLAALGGHEHVIHCLLYAGAGAPNRYNCQG
RCHAELRSTALHYAAEGGHVGVIVALLSAGFCNGQPDETGVTAAEISARV
GHESSREATRRLLGGDRGGKLVYDYVNMVSQDVATVCGLAQGGAFLDWQD
NHRRRSPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHIYDTHART
DDSYTPLHLAVVYNRIGVTRLLLDASASSLEVRDSFHGITPLAWASKFSF
ATMLRILLSMGADVNSRSPAGLTPLHWACRFNNADIVECLLLAGADPDSL
DNEGADAGSAIGLGDPPRHKGPQSPPILPGAVNRTGWLKNETLATRIQLA
LSNARKDRTWRRRGWLVVLARRQAMAMAVVPGTTSRASKTSVSGNKSDSK
MTIPRILATTGVDADTGRRVHLASHQEGTRQGIVRSSSDLPHSNDVPGGW
SHGNLGNSVPLQSKGSHNTAIFTSQISESSSMQLGWAGGGSAGHIDKVTG
WTPGQGVVQALLGLAAVEVGVFRGVMRYIYMNDMLLTADSDGPRWPRRGL
L
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mRNA from alignment at Scaffold_65:188098..190108-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft90_19a-0001 ID=EsuBft90_19a-0001|Name=EsuBft90_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2011bp|location=Sequence derived from alignment at Scaffold_65:188098..190108- (Ectocarpus subulatus male Bft15b)
ATGGCGAGAACATCAGGAACGACTCCTCCTGGCTTCGACACTTGTGATCC
GCGCCAATGGGTGATTCGCCATCAACGGCTTGTTGCGCAGATATTCCCAC
GATCCGTGACGGATAAGTCGATGAACAGCACTCCAATCGGAGAAGCAGGC
GAGATAATTCACTGTGCCGCCTCGCAGGGCCTCACTTTCGCCGTCCAAGC
CTTGCTTGCAGAACGGCGTACCGCCTGTGACGCAAAAGATCGCTTCGGCA
AAACTCCTCTTCACTGGGCTGCCGGACAAGGACACGTCGACACTGTCTTG
GCGCTCGTGGATGCCGGAGCCTTGGTCGACTCTCGCGACCACTTCAAGGC
CACACCACTCATGCTCGCGGCCTTGGGGGGGCACGAGCACGTCATTCACT
GTCTGCTGTATGCCGGGGCTGGTGCTCCCAACCGTTACAACTGCCAAGGG
CGTTGTCACGCCGAATTGAGGAGTACCGCCCTTCACTATGCCGCTGAGGG
TGGTCACGTTGGAGTTATCGTAGCCCTGCTGAGCGCTGGCTTCTGCAACG
GTCAGCCCGACGAGACCGGTGTAACCGCAGCCGAGATATCCGCCAGAGTG
GGGCACGAGTCCTCACGGGAAGCCACCCGTCGGCTCCTAGGCGGTGACAG
AGGGGGCAAGCTGGTCTACGACTACGTCAACATGGTCAGCCAGGACGTGG
CTACCGTGTGCGGTCTGGCCCAAGGCGGGGCGTTTCTGGATTGGCAGGAC
AACCACAGGAGACGCTCTCCGTTGCACCGGGCGGTGTACTTTGGGCACTT
TCAGATTCTCAAGATTCTACTCGCTGCTGGCGCCAACCCAAACGTCGCCG
ACAACCATGCCGTTACCCCGTTGCATATATATGGTTGCCGTCAAGGGATG
CGAGGCTGAGGCTGCCGAACTGCTCTGTGCCGGAGCAGATACGCACGCAC
GCACGGATGACAGCTATACGCCGCTACATCTGGCCGTCGTCTACAACAGG
ATTGGTGTCACGAGGCTACTCCTAGACGCTTCGGCATCCTCCCTCGAAGT
CCGCGATAGTTTCCACGGTATCACGCCGCTCGCATGGGCGTCCAAGTTCT
CCTTCGCTACCATGCTGCGCATTTTGCTGAGTATGGGAGCCGACGTCAAC
TCTAGGTCTCCAGCGGGCTTGACCCCCCTCCATTGGGCGTGCCGCTTCAA
CAATGCTGACATCGTCGAGTGCTTGCTGTTGGCGGGAGCCGACCCCGACT
CTTTGGATAACGAGGGTGCTGATGCCGGCTCTGCGATTGGTCTTGGTGAC
CCCCCCCGCCACAAGGGACCCCAGAGCCCTCCCATTCTTCCAGGAGCGGT
GAATCGAACCGGCTGGCTAAAGAATGAAACGTTGGCGACCCGCATTCAGC
TGGCTCTGTCGAATGCGAGGAAGGATCGCACTTGGCGTCGTAGGGGCTGG
TTGGTCGTGCTGGCTAGGAGGCAAGCGATGGCGATGGCGGTGGTACCCGG
CACTACTTCCAGAGCTTCCAAGACTTCCGTGAGTGGCAACAAGAGCGATT
CTAAGATGACCATACCAAGGATTCTGGCGACGACAGGTGTGGACGCAGAC
ACAGGCCGCCGTGTGCATCTTGCCAGCCACCAGGAAGGGACTCGGCAGGG
AATTGTAAGGTCATCGAGCGATCTCCCTCACAGCAACGACGTCCCCGGTG
GGTGGTCACACGGAAACTTAGGCAACAGTGTGCCCCTTCAATCTAAGGGG
AGCCACAACACCGCTATTTTCACGTCACAAATATCTGAATCATCATCGAT
GCAGCTCGGGTGGGCTGGTGGAGGTAGCGCCGGCCACATCGACAAAGTCA
CTGGCTGGACACCGGGGCAGGGAGTAGTACAGGCTCTGCTTGGGCTGGCA
GCCGTGGAAGTTGGTGTGTTTCGTGGTGTGATGCGCTACATATATATGAA
TGACATGTTGCTTACCGCAGATAGCGACGGTCCGCGCTGGCCACGCCGAG
GTCTACTGTAG
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Coding sequence (CDS) from alignment at Scaffold_65:188098..190108-

>EsuBft90_19a-0001 ID=EsuBft90_19a-0001|Name=EsuBft90_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1956bp|location=Sequence derived from alignment at Scaffold_65:188098..190108- (Ectocarpus subulatus male Bft15b)
ATGGCGAGAACATCAGGAACGACTCCTCCTGGCTTCGACACTTGTGATCC
GCGCCAATGGGTGATTCGCCATCAACGGCTTGTTGCGCAGATATTCCCAC
GATCCGTGACGGATAAGTCGATGAACAGCACTCCAATCGGAGAAGCAGGC
GAGATAATTCACTGTGCCGCCTCGCAGGGCCTCACTTTCGCCGTCCAAGC
CTTGCTTGCAGAACGGCGTACCGCCTGTGACGCAAAAGATCGCTTCGGCA
AAACTCCTCTTCACTGGGCTGCCGGACAAGGACACGTCGACACTGTCTTG
GCGCTCGTGGATGCCGGAGCCTTGGTCGACTCTCGCGACCACTTCAAGGC
CACACCACTCATGCTCGCGGCCTTGGGGGGGCACGAGCACGTCATTCACT
GTCTGCTGTATGCCGGGGCTGGTGCTCCCAACCGTTACAACTGCCAAGGG
CGTTGTCACGCCGAATTGAGGAGTACCGCCCTTCACTATGCCGCTGAGGG
TGGTCACGTTGGAGTTATCGTAGCCCTGCTGAGCGCTGGCTTCTGCAACG
GTCAGCCCGACGAGACCGGTGTAACCGCAGCCGAGATATCCGCCAGAGTG
GGGCACGAGTCCTCACGGGAAGCCACCCGTCGGCTCCTAGGCGGTGACAG
AGGGGGCAAGCTGGTCTACGACTACGTCAACATGGTCAGCCAGGACGTGG
CTACCGTGTGCGGTCTGGCCCAAGGCGGGGCGTTTCTGGATTGGCAGGAC
AACCACAGGAGACGCTCTCCGTTGCACCGGGCGGTGTACTTTGGGCACTT
TCAGATTCTCAAGATTCTACTCGCTGCTGGCGCCAACCCAAACGTCGCCG
ACAACCATGCCGTTACCCCGTTGCATATATATGATACGCACGCACGCACG
GATGACAGCTATACGCCGCTACATCTGGCCGTCGTCTACAACAGGATTGG
TGTCACGAGGCTACTCCTAGACGCTTCGGCATCCTCCCTCGAAGTCCGCG
ATAGTTTCCACGGTATCACGCCGCTCGCATGGGCGTCCAAGTTCTCCTTC
GCTACCATGCTGCGCATTTTGCTGAGTATGGGAGCCGACGTCAACTCTAG
GTCTCCAGCGGGCTTGACCCCCCTCCATTGGGCGTGCCGCTTCAACAATG
CTGACATCGTCGAGTGCTTGCTGTTGGCGGGAGCCGACCCCGACTCTTTG
GATAACGAGGGTGCTGATGCCGGCTCTGCGATTGGTCTTGGTGACCCCCC
CCGCCACAAGGGACCCCAGAGCCCTCCCATTCTTCCAGGAGCGGTGAATC
GAACCGGCTGGCTAAAGAATGAAACGTTGGCGACCCGCATTCAGCTGGCT
CTGTCGAATGCGAGGAAGGATCGCACTTGGCGTCGTAGGGGCTGGTTGGT
CGTGCTGGCTAGGAGGCAAGCGATGGCGATGGCGGTGGTACCCGGCACTA
CTTCCAGAGCTTCCAAGACTTCCGTGAGTGGCAACAAGAGCGATTCTAAG
ATGACCATACCAAGGATTCTGGCGACGACAGGTGTGGACGCAGACACAGG
CCGCCGTGTGCATCTTGCCAGCCACCAGGAAGGGACTCGGCAGGGAATTG
TAAGGTCATCGAGCGATCTCCCTCACAGCAACGACGTCCCCGGTGGGTGG
TCACACGGAAACTTAGGCAACAGTGTGCCCCTTCAATCTAAGGGGAGCCA
CAACACCGCTATTTTCACGTCACAAATATCTGAATCATCATCGATGCAGC
TCGGGTGGGCTGGTGGAGGTAGCGCCGGCCACATCGACAAAGTCACTGGC
TGGACACCGGGGCAGGGAGTAGTACAGGCTCTGCTTGGGCTGGCAGCCGT
GGAAGTTGGTGTGTTTCGTGGTGTGATGCGCTACATATATATGAATGACA
TGTTGCTTACCGCAGATAGCGACGGTCCGCGCTGGCCACGCCGAGGTCTA
CTGTAG
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