EsuBft90_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft90_17a-0001
Unique NameEsuBft90_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_65contigScaffold_65:224018..224901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo136255
ProteomeIdEsuBft90_17
Protein domainsTMhelix
Protein domainsPTHR24559
Protein domainsIPR012337
Protein domainsIPR001584
Ownerapollo_admin@sb-roscoff.fr
Notetransposon ty3-i gag-pol polyprotein os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:ty3b-i pe:3 sv:2 [Automatic annotation]
Nb exon1
Max annot lvl4776|Peronosporales
Length884
Hectar predicted targeting categoryother localisation
Evalue2.03e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QBIP@4776|Peronosporales
Date last modified2016-06-13
Date creation2016-06-13
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft90_17aEsuBft90_17aEctocarpus subulatus male Bft15bgeneScaffold_65 224018..224901 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_17a-0001-exonEsuBft90_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_65 224018..224901 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_17a-0001-exonagat-three_prime_utr-22968Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_65 224018..224502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_17a-0001-cdsEsuBft90_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_65 224503..224901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_17a-0001EsuBft90_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_65 224503..224901 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft90_17a-0001 ID=EsuBft90_17a-0001|Name=EsuBft90_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=884bp|location=Sequence derived from alignment at Scaffold_65:224018..224901- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATTGCTGCAGGGGCCTGGTGCGGTCGTCGGCGTCGACTTCTTCGG
ACCGCTGCCAGTGACTGCCAAGGGCAACTCCTACATTTTGTTGTTCACAG
ACCGTTTCAGTCGGAGAGCCGACATGTCCGCGGTTACAGCAGCGGAACTT
ACGGTGAAAGGGACCGCTCACATCTTTGTCAACCAATACATGACCAAGTG
GGGATGTCCGACTTCGTTATTGTCGGACAACGGACTGCATTTCTGCTCGA
AGCTCTCCATGGCGATCTACGAGGTGATGAAGATCAAGAAGGTCACCACC
AGCTCCTACCACCCGCAGACCAAAGGCGGCACGGAACGCGTGAATCACAC
AATGGTCCAGATGCTTGCGGTGGTCGTCAACGAACAGCAAAACGATTGAG
ACGTTCATCTCCCGCACGTTGAGTTTGCCTACAACAATTCCGCGAACCAG
CCTACTGGATTAGCGCCAAACAAGATCCACATCGGACGCATCCCGCGACT
CCCGCTTTCGGTCTTCGATCATCCCACGGTAGGTGGTCATCAAAGCTTGG
CCCGCGATCAACTCGAGTGTTGCAACCTGGCTGTCGATTGCCAGCGCCGG
GCCTACGAACTTGTCCGTGAGTACAACGGCCTGAAGATTTCGCGAGTCGA
ACGCCGCAATTCATCCCTGCTCGACGCCATTCACAAGCCCCCTCAGTTTA
CCGTTGGCGGGTGGGCTTGGGTGTACAGCACGGCTGCAACGATTCGACAG
GGTGTGCAGAAGGACACGGACCAACAGGTGCTCAAGGCCAAATTCGCACT
TTCCTGGACGGGGCCCTACAAAGTTCTTGCGGTGGGTCCCGCTTCTGCCG
ACGCCACCCCGGACGGCAGCCCGTTGGCGCGTAA
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protein sequence of EsuBft90_17a-0001

>EsuBft90_17 ID=EsuBft90_17|Name=EsuBft90_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=132bp
MPLLQGPGAVVGVDFFGPLPVTAKGNSYILLFTDRFSRRADMSAVTAAEL
TVKGTAHIFVNQYMTKWGCPTSLLSDNGLHFCSKLSMAIYEVMKIKKVTT
SSYHPQTKGGTERVNHTMVQMLAVVVNEQQND
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mRNA from alignment at Scaffold_65:224018..224901-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft90_17a-0001 ID=EsuBft90_17a-0001|Name=EsuBft90_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=884bp|location=Sequence derived from alignment at Scaffold_65:224018..224901- (Ectocarpus subulatus male Bft15b)
ATGCCATTGCTGCAGGGGCCTGGTGCGGTCGTCGGCGTCGACTTCTTCGG
ACCGCTGCCAGTGACTGCCAAGGGCAACTCCTACATTTTGTTGTTCACAG
ACCGTTTCAGTCGGAGAGCCGACATGTCCGCGGTTACAGCAGCGGAACTT
ACGGTGAAAGGGACCGCTCACATCTTTGTCAACCAATACATGACCAAGTG
GGGATGTCCGACTTCGTTATTGTCGGACAACGGACTGCATTTCTGCTCGA
AGCTCTCCATGGCGATCTACGAGGTGATGAAGATCAAGAAGGTCACCACC
AGCTCCTACCACCCGCAGACCAAAGGCGGCACGGAACGCGTGAATCACAC
AATGGTCCAGATGCTTGCGGTGGTCGTCAACGAACAGCAAAACGATTGAG
ACGTTCATCTCCCGCACGTTGAGTTTGCCTACAACAATTCCGCGAACCAG
CCTACTGGATTAGCGCCAAACAAGATCCACATCGGACGCATCCCGCGACT
CCCGCTTTCGGTCTTCGATCATCCCACGGTAGGTGGTCATCAAAGCTTGG
CCCGCGATCAACTCGAGTGTTGCAACCTGGCTGTCGATTGCCAGCGCCGG
GCCTACGAACTTGTCCGTGAGTACAACGGCCTGAAGATTTCGCGAGTCGA
ACGCCGCAATTCATCCCTGCTCGACGCCATTCACAAGCCCCCTCAGTTTA
CCGTTGGCGGGTGGGCTTGGGTGTACAGCACGGCTGCAACGATTCGACAG
GGTGTGCAGAAGGACACGGACCAACAGGTGCTCAAGGCCAAATTCGCACT
TTCCTGGACGGGGCCCTACAAAGTTCTTGCGGTGGGTCCCGCTTCTGCCG
ACGCCACCCCGGACGGCAGCCCGTTGGCGCGTAA
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Coding sequence (CDS) from alignment at Scaffold_65:224018..224901-

>EsuBft90_17a-0001 ID=EsuBft90_17a-0001|Name=EsuBft90_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=399bp|location=Sequence derived from alignment at Scaffold_65:224018..224901- (Ectocarpus subulatus male Bft15b)
ATGCCATTGCTGCAGGGGCCTGGTGCGGTCGTCGGCGTCGACTTCTTCGG
ACCGCTGCCAGTGACTGCCAAGGGCAACTCCTACATTTTGTTGTTCACAG
ACCGTTTCAGTCGGAGAGCCGACATGTCCGCGGTTACAGCAGCGGAACTT
ACGGTGAAAGGGACCGCTCACATCTTTGTCAACCAATACATGACCAAGTG
GGGATGTCCGACTTCGTTATTGTCGGACAACGGACTGCATTTCTGCTCGA
AGCTCTCCATGGCGATCTACGAGGTGATGAAGATCAAGAAGGTCACCACC
AGCTCCTACCACCCGCAGACCAAAGGCGGCACGGAACGCGTGAATCACAC
AATGGTCCAGATGCTTGCGGTGGTCGTCAACGAACAGCAAAACGATTGA
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