EsuBft90_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft90_13a-0001
Unique Name	EsuBft90_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_65	contig	Scaffold_65:280190..284622 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	136037.KDR09238
ProteomeId	EsuBft90_13
Protein domains	IPR019532
Protein domains	PTHR13595
Owner	apollo_admin@sb-roscoff.fr
Note	adp-ribosylation factor-like protein 6-interacting protein 4 os:gallus gallus gn:arl6ip4 pe:2 s [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	1313
Hectar predicted targeting category	other localisation
Evalue	4.6e-09
EggNOG OGs	2CJKG@1\|root,2RYBZ@2759\|Eukaryota,3A6MG@33154\|Opisthokonta,3BQ0Y@33208\|Metazoa,3CWQ7@33213\|Bilateria,420DE@6656\|Arthropoda,3SNXW@50557\|Insecta
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	ARL6IP4
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Description	Nuclear RNA-splicing-associated protein
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0031227
GO	0005515
GO	0005622
GO	0008380

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft90_13a	EsuBft90_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_65 280190..284622 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_13a-0001	EsuBft90_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_65 282365..284559 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_13a-0001-exon	agat-exon-75539	Ectocarpus subulatus male Bft15b	exon	Scaffold_65 280190..280299 +
EsuBft90_13a-0001-exon	agat-exon-75540	Ectocarpus subulatus male Bft15b	exon	Scaffold_65 281035..281536 +
EsuBft90_13a-0001-exon	agat-exon-75541	Ectocarpus subulatus male Bft15b	exon	Scaffold_65 282333..282811 +
EsuBft90_13a-0001-exon	EsuBft90_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_65 284401..284622 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_13a-0001-exon	agat-five_prime_utr-14911	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_65 280190..280299 +
EsuBft90_13a-0001-exon	agat-five_prime_utr-14912	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_65 281035..281536 +
EsuBft90_13a-0001-exon	agat-five_prime_utr-14913	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_65 282333..282364 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_13a-0001-cds	EsuBft90_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_65 282365..282811 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_13a-0001-exon	agat-three_prime_utr-22964	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_65 284560..284622 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_65:280190..284622+
coding sequence from alignment at Scaffold_65:280190..284622+

spliced messenger RNA

>EsuBft90_13a-0001 ID=EsuBft90_13a-0001|Name=EsuBft90_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1313bp|location=Sequence derived from alignment at Scaffold_65:280190..284622+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAAGACAAACAACAACAACAACAATCTCCGTTCCCATCCTCTGCTGCGCT
CTTTCACCAATAAAGGACTCTCATCTCAAGGATCGAAGGCACGTGCAGAG
CGAGTCGAAGATGCGTAGGAAGCGCGGCACCAGCACCAGTAGCAGTTCTG
GCGGAAGCGTTGTGGCTTGCGGAAGAGAATCGAAGCGGAAACATGTGTCG
CGCCGTGGTCATCGAAGCTCCAGCAGCAATGCGAGCATCGAGAGAGAAGG
CAGCAGGGGCCAAGGCGAAGGAGGCAAGCGTGTGCATAAATCGAAAAAAC
AATGCCGGACATCTCCCCGAGGCAGGTCAGGCACCAGAAATCGCAACAAT
AGCAGCAGGTCAAGCCGCCGCCGCCGCCGCCACCGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTCGCAGCAGCAGTAGCAGCAGCAGAT
CTAGCAGCAGAAGCAGGAAACGAAAGTTGCGGGGGCGCCGGCGGACGGGG
GAGGCAGCGAGGGCTCTTCGTTCCGATAGCAAGCCGAGGAGGGGGGGGGA
GCGAGACAGGACGAACAAAAGGAGCGTGAAGAGGAAGAGGATAACACACA
AGAAGAGATCAGGCGACCGGGCTTCACCGTCGCCGCCACTGCCAATGCCG
CCGCCCAGCGATGGCATGGACGCCGAAAGGGAACGGATGGGAGGCAGACG
TCGGGACAAAGAGTCTAGCAAGAAGAAGAAAGGCGAGAAAAAGGACAAGA
AACCCAAGCGGAAGCAAACGCCTGTTGCACAGACGGCAAGGTCCCCCACT
CCTACAAACACCGCCGCTGGTGCCGCCGCCACCGCTGCCTCCTGTGACTG
CCCCGAGAAGAGAAGAAACGGGGCAGAAGATGGACTCAACACCGACTACC
GGCAGAGTACGGCAACCGGTGGTTTCCTTCCCTCGTCTCGTAATAACGCC
GCACAGGCGCAAGACCCGTCAAACGCCACCACAATTACTGCCGAAAGACC
GGCAGATATGGAAACCAAGGCGGCGAGGGCAAGGGCTATGGTACCCATGC
GACCGGAGGAGTATGCTGCACAGAAGAGGACAGTACGGCAGGTTTTCGAT
GAAGACACTGGGCGGTGGAGGCTAGTAAAGGGCACGGGAGAAATCATCGA
GCGGATAGTCTCACGCCAGGAGCAGCAGGAAATCCAGCGGCACGCTTCCA
GATGGGGTTGGGACCACAAGACGCTCTCAAGGGACCCCGTGGGAGAATGA
AAATCAAACGCTCGCTTGCTTCAGAGGTTGCGTCAAAACGGAATGAATCA
CCTTACCCTTGAC

protein sequence of EsuBft90_13a-0001

>EsuBft90_13 ID=EsuBft90_13|Name=EsuBft90_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=201bp
MPPPSDGMDAERERMGGRRRDKESSKKKKGEKKDKKPKRKQTPVAQTARS
PTPTNTAAGAAATAASCDCPEKRRNGAEDGLNTDYRQSTATGGFLPSSRN
NAAQAQDPSNATTITAERPADMETKAARARAMVPMRPEEYAAQKRTVRQV
FDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHASRWGWDHKTLSRDPVG
E

mRNA from alignment at Scaffold_65:280190..284622+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft90_13a-0001 ID=EsuBft90_13a-0001|Name=EsuBft90_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4433bp|location=Sequence derived from alignment at Scaffold_65:280190..284622+ (Ectocarpus subulatus male Bft15b)
GAAGACAAACAACAACAACAACAATCTCCGTTCCCATCCTCTGCTGCGCT
CTTTCACCAATAAAGGACTCTCATCTCAAGGATCGAAGGCACGTGCAGAG
CGAGTCGAAGGTGAGCGAGAAAGCTCGCCAACAATCCTTAGTAGCCCGCA
AAAATGCCGTAGTGAAACTTCCGCATTTCGACAGGCTCGATTGCACGGCA
GATCACTGGCACCTGTTGGAGAGGTGAGGCTGCTGCTGTAGGGAGGCGCA
CAGACAGCAGCGAGACAGGGAGCCACCAATAATGGCATATGGGTGACTAT
TAGCTCAGCGCCGTGGGCAGTGAACAACCTGGTGCGACGGCGTGTTATAG
ACGGGATTTGGTGTGTGGAACCAACTGCCGAAACCGGACTTTGCGCGTGA
ATCGCACCGTTGGTTGCGTAAGACACCACACCCCCTGGACCGATTTTCAA
TGCTGGAATATTCGATAGAAAAAGCAGTTATAACGGTGCCGAGAATGTAT
GGTACCGTTCTAAAGAAGAAAGAAAATGAGGGCGTTAGAGCCTTCTCGTC
AACAGCTTACCGAAAATGTATTGTTTGGTGTTGGCATTCTCTTCCTCGTG
GAGTAATTGCGTAATCGCGCTTTGAAAAATCGGTCCAGGGGGTGTGGTAT
CTTACGCAACTAACGGTTCGCTTCACACGCAAAGTCCGGTTTCGGCAGTT
GGTTCCACACACCAAATCACGTCTATTACACGCCGTCGCACCAGGTTGTT
CACTGCCTACAACACCCCCATCTCGAGCCCTCTCAACCCATACTTGTGCC
AGGCAATATTTTACTGCTCTGTCCCACTCATGGTTCGGCCTGCAGATGCG
TAGGAAGCGCGGCACCAGCACCAGTAGCAGTTCTGGCGGAAGCGTTGTGG
CTTGCGGAAGAGAATCGAAGCGGAAACATGTGTCGCGCCGTGGTCATCGA
AGCTCCAGCAGCAATGCGAGCATCGAGAGAGAAGGCAGCAGGGGCCAAGG
CGAAGGAGGCAAGCGTGTGCATAAATCGAAAAAACAATGCCGGACATCTC
CCCGAGGCAGGTCAGGCACCAGAAATCGCAACAATAGCAGCAGGTCAAGC
CGCCGCCGCCGCCGCCACCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGTCGCAGCAGCAGTAGCAGCAGCAGATCTAGCAGCAGAAGCA
GGAAACGAAAGTTGCGGGGGCGCCGGCGGACGGGGGAGGCAGCGAGGGCT
CTTCGTTCCGATAGCAAGCCGAGGAGGGGGGGGGAGCGAGACAGGACGAA
CAAAAGGAGCGTGAAGAGGAAGAGGATAACACACAAGAAGAGATCAGGTA
ATGTACCAAACTCCAGAAGGTGTCGTTGCCACCGGATGTCATGTAGTGTT
GCAGCTGATGAGCTGCTTCGGTCCGCTTTTGGCGGCTGGCCAATGCCTAA
AACCCGACACTCCAATCCCGTCGCATCTAATGGTGCCAAATAGAGACGCG
GACACCAAGATTCGCGTGAGATACATGTTCGTCTTACAGGGCATGCCTTG
TCTTGGTGTATCAAACAACACAATTGAAAATGTGGAATCCAGGCTCGGGC
CAAACTTGCGTGTCATTCGAGCTGCCGTGTCCGCGTAATTTGTTGATATT
GTCACGTGGCATGCGCTACTGCAGGTGTTGAGGCGCCGTTTGAAAAACTT
GGGGTTTGTTTCCTGACCACGAAAGAAACGTCCTGTTGCCCCCACCGCCT
GAATTATTGGAGGAGTTTTGACACTCATCACTTCGTTTTCAATGTCACTA
CATTGAGAGTACCACGGGTTTCCGAGATTTTTATGCATATTTTACGCTGT
TGCCATGTAATGCTCTGGTCTCACGCGGAGGAAATGGGCATCGCATGCCA
TTTCATTGTTGCTACATAAGTTGTCTTGTTAGATACCAGACTGTAAACTC
TCGGAAAAATAGCAAGTTCTACTACTCACCCCACCAAGCAGAAATCTCCC
ACGACCATAGTAGAACAACGCGGCGTGGTTGGAACCCTACACCCGCTGAA
CTACCACAAGTTAGCCAGTATGGTTTGTTCATCGTTGTCGTGAGGGCTAA
ACTCTCGCCGTGCGTAATTGTCTTGCCACTTCGCCCGAAGCAGGCGACCG
GGCTTCACCGTCGCCGCCACTGCCAATGCCGCCGCCCAGCGATGGCATGG
ACGCCGAAAGGGAACGGATGGGAGGCAGACGTCGGGACAAAGAGTCTAGC
AAGAAGAAGAAAGGCGAGAAAAAGGACAAGAAACCCAAGCGGAAGCAAAC
GCCTGTTGCACAGACGGCAAGGTCCCCCACTCCTACAAACACCGCCGCTG
GTGCCGCCGCCACCGCTGCCTCCTGTGACTGCCCCGAGAAGAGAAGAAAC
GGGGCAGAAGATGGACTCAACACCGACTACCGGCAGAGTACGGCAACCGG
TGGTTTCCTTCCCTCGTCTCGTAATAACGCCGCACAGGCGCAAGACCCGT
CAAACGCCACCACAATTACTGCCGAAAGACCGGCAGATATGGAAACCAAG
GCGGCGAGGGCAAGGGCTATGGTACCCATGCGACCGGAGGAGTATGCTGC
ACAGAAGAGGACAGTACGGCAGGTGGGTTGATGGGAGGGAAAGAGAGACA
CAAAGACTCGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGGGTACTCATAGTCGTGCATGCCGTAGTCGTTAGAC
CATTGACCTCGAGGGAGGGGGGAAATGAATGATCGCTCAGTTGAAGGCTG
TGTTCAGGCGTATATGAGGAGCGAAAAGGAAAGGGGCTCAATGTGGCTTC
CCTCTCAAGACTTGTCAGATTTTTCTCTCCCCTATCAATGTTGATTGTTT
TGGCATAAAGTGCCCTGCTCACGCAGGGCTGCCTCCAATCCGAGGTCCGC
TCTCCTTTGAACGTGCATGGTTGGTTACGACCAAGTGTTCCAAATCAAAC
GGCACAAGACATGCTTGCGTTGCGCGAACGTCGGCGCGCGGCTTTTTTTG
CCGAGGCTTTTGCCGAACTACTTGCGGAGTTTGTCAAGACTCTTGGTGGT
CGTTGTGCTTCTTAACACTTCGCACACCCATCCACTTTTCTGCAGCGTCA
GGTTTTGCCTGTTTGTCAAACTCTGCTACCATGCAACGAAGGCCACCGGC
CGTCCAGTGCATGCATCAGCACCAATCGCAGCGGTATGTAGAGAGGGGTT
GCTGCAGTGCTCCATGCGGTTGAAGCAAATTGTGAACAATTTTATCGACG
GACAGCGACAAAAAAAGGCTGCTGGTGTGTAGGAAAAGTTACCTCAGTAG
AGTGTCGTCAGTTGAGACACACCCAACGCGTACCAAAACGTTGGAGTGTG
CCGCACACGGTTCGCCATAGCTTAGTAGAGCATGGCCTACACTGCATGTA
AAAAATAGGTGCAGGGAGGAGTGCTTCGTCGCAGTATGATTGCTTGTGAA
AGACTGGTGAGATGGATATGACGTGCCTCTCAAGGTGCACGCGAGGTGCA
AAAGCGGAACGACAGTCCAACAAAAAGACTGCCGATGGTGATATAGTTTG
ACACGTGACTTTTCGTCGCCTACAAGCGTCAACAGCCCAATGTGAACGGA
TGTGCTGGTAGCGCTTTCGATGCTCGTCTTCGGGAGCTGCTGTGTGTATA
GGCGTGCTCGCTGTGCTCACCACCAGCGTTTCTTTTTGTTGTCGCGGCAT
CCTAGGGCCGCGAGCCTCGTTGTGATAGCGGTGTTGATCTCAGAGAATTA
AGCCGCGGCGAGATAGAAAGGCAGACACTAAAAAGACGTCAATGGGGTGC
TGGTGTGGGCAGAAGCAAGACACAATGCTAATGCTTGCGTTTGATACAGG
TGTTGCTTCGATTGAAATCCTTGGACAGGGCCCTCCAGGCGTGGGTCGCG
CGAAGGCACCGCGATTTTGTGCTTGTAACTTCCGCGAGCTGAGAAAAAAC
GGCCACGGTCACAAAAAGCTTCCAAAAAAACGCTTCCAAAAAGACGCAGA
CAAGATTTCTTTTAAGTTCTTTCGTTTCCGCAGCAGAAACCAATCCTACT
CGGATTGGAACAACACAAGGCGCTAATGCGTGTTCACACCAACATGTTGT
CCGGGAAACAGGTTTTCGATGAAGACACTGGGCGGTGGAGGCTAGTAAAG
GGCACGGGAGAAATCATCGAGCGGATAGTCTCACGCCAGGAGCAGCAGGA
AATCCAGCGGCACGCTTCCAGATGGGGTTGGGACCACAAGACGCTCTCAA
GGGACCCCGTGGGAGAATGAAAATCAAACGCTCGCTTGCTTCAGAGGTTG
CGTCAAAACGGAATGAATCACCTTACCCTTGAC

Coding sequence (CDS) from alignment at Scaffold_65:280190..284622+

>EsuBft90_13a-0001 ID=EsuBft90_13a-0001|Name=EsuBft90_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=606bp|location=Sequence derived from alignment at Scaffold_65:280190..284622+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCGCCCAGCGATGGCATGGACGCCGAAAGGGAACGGATGGGAGG
CAGACGTCGGGACAAAGAGTCTAGCAAGAAGAAGAAAGGCGAGAAAAAGG
ACAAGAAACCCAAGCGGAAGCAAACGCCTGTTGCACAGACGGCAAGGTCC
CCCACTCCTACAAACACCGCCGCTGGTGCCGCCGCCACCGCTGCCTCCTG
TGACTGCCCCGAGAAGAGAAGAAACGGGGCAGAAGATGGACTCAACACCG
ACTACCGGCAGAGTACGGCAACCGGTGGTTTCCTTCCCTCGTCTCGTAAT
AACGCCGCACAGGCGCAAGACCCGTCAAACGCCACCACAATTACTGCCGA
AAGACCGGCAGATATGGAAACCAAGGCGGCGAGGGCAAGGGCTATGGTAC
CCATGCGACCGGAGGAGTATGCTGCACAGAAGAGGACAGTACGGCAGGTT
TTCGATGAAGACACTGGGCGGTGGAGGCTAGTAAAGGGCACGGGAGAAAT
CATCGAGCGGATAGTCTCACGCCAGGAGCAGCAGGAAATCCAGCGGCACG
CTTCCAGATGGGGTTGGGACCACAAGACGCTCTCAAGGGACCCCGTGGGA
GAATGA