EsuBft909_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft909_3a-0001
Unique NameEsuBft909_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_95contigScaffold_95:24103..25034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FPP7
ProteomeIdEsuBft909_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length58
Hectar predicted targeting categoryother localisation
Evalue2.79e-75
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K06641,ko:K20877
KEGG Pathwayko04110,ko04111,ko04115,ko04218,ko05166,map04110,map04111,map04115,map04218,map05166
KEGG ModuleM00691
GOsGO:0000003,GO:0001775,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007338,GO:0007343,GO:0007346,GO:0008150,GO:0008152,GO:0009566,GO:0009794,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019953,GO:0022414,GO:0032991,GO:0036211,GO:0040019,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044703,GO:0045787,GO:0045931,GO:0045977,GO:0045995,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0051704,GO:0051726,GO:0061695,GO:0065007,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1902554,GO:1902911,GO:1990234,GO:2000026
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft909_3aEsuBft909_3aEctocarpus subulatus male Bft15bgeneScaffold_95 24103..25034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft909_3a-0001-exonEsuBft909_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_95 24103..24654 -
EsuBft909_3a-0001-exonagat-exon-85216Ectocarpus subulatus male Bft15bexonScaffold_95 25002..25034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft909_3a-0001-cdsEsuBft909_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_95 24103..24654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft909_3a-0001EsuBft909_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_95 24103..25034 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft909_3a-0001 ID=EsuBft909_3a-0001|Name=EsuBft909_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=585bp|location=Sequence derived from alignment at Scaffold_95:24103..25034- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTTACGCCCGCCAATCCTCTGGGACAGTGGATTTCTTGGGCCCT
ACGCTCCTGTGGTTCCATTCGTCCGGCTCGTGAAGATACTCTTCCTACTT
GGGACAGCATGGCGGAGTACGATGAGGCCGGGCACACCATGAGGCCGTCG
AGGGTGTTGTCGTCGGTTTTCCAGTCCATGGCCGAAGAAGACCCTGCCGC
GTCGAGAACTTTCTACTCAACCTCCTCTCCCAGTGCCACGTCTGTCCCCC
GTTCGACGTCCGCATCGGCTCGTGCGGCTGCCGCTGCTTTTGTGGCTGCC
TCCGCTTCTGCGGCTGCCTCCGCCTCTGGCATTGGGGTGTCTCGCTCGGT
TACTATCGGCGCCACTTCACCACCCTCTATGTCGGCCACAGTCAACCCCA
CTGCCGCTAGCGGACACGGAGGCGTTGACCAGGCTAGGAACATTGAGGCC
GGGGTGGACAACGTTGTTAACAAGGCGATCGACGAAGCGGAGGAGAGGAA
GGCCGGCAGCATTGTGGACACGAAGAATGAGATCGACGATAACGGTGAGC
ACGACGAGGATGAAGGCAATGTCGCGACGTACTAA
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protein sequence of EsuBft909_3a-0001

>EsuBft909_3 ID=EsuBft909_3|Name=EsuBft909_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MDVTPANPLGQWISWALRSCGSIRPAREDTLPTWDSMAEYDEAGHTMRPS
RVLSSVFQSMAEEDPAASRTFYSTSSPSATSVPRSTSASARAAAAAFVAA
SASAAASASGIGVSRSVTIGATSPPSMSATVNPTAASGHGGVDQARNIEA
GVDNVVNKAIDEAEERKAGSIVDTKNEIDDNGEHDEDEGNVATY
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mRNA from alignment at Scaffold_95:24103..25034-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft909_3a-0001 ID=EsuBft909_3a-0001|Name=EsuBft909_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=932bp|location=Sequence derived from alignment at Scaffold_95:24103..25034- (Ectocarpus subulatus male Bft15b)
ATGGACGTTACGCCCGCCAATCCTCTGGGACAGGTAAGGCAAAAGCTATG
AAAGTGTACTTGGTAGTCTGCAACTCAACCACGCCGACGTCTGAGAATCA
ACGTATAGGATTTTCTGCCAGCTTAGCGCATTTTCGCTGCATGCAAAGTA
CCTCCGACCCGCAAAAAGTAGACAACAGGAGGTACCGAGGCATGTGTGGA
ATGACTGATTGGCAAACACAAGTTCGACTTCGACGCTTTCTCAAAACGGC
ATGCAGCTTGCAAGCGTAGTTTCTCCGCATGCTGCGCAGCCTCTGCATAA
GCGATACTGTCGGTACGACTTGTTGTGTGCCATTTGTTGGTGTGCATTCG
TGTGCCTTGATCGACCAATCGTGCTCGCAGTGGATTTCTTGGGCCCTACG
CTCCTGTGGTTCCATTCGTCCGGCTCGTGAAGATACTCTTCCTACTTGGG
ACAGCATGGCGGAGTACGATGAGGCCGGGCACACCATGAGGCCGTCGAGG
GTGTTGTCGTCGGTTTTCCAGTCCATGGCCGAAGAAGACCCTGCCGCGTC
GAGAACTTTCTACTCAACCTCCTCTCCCAGTGCCACGTCTGTCCCCCGTT
CGACGTCCGCATCGGCTCGTGCGGCTGCCGCTGCTTTTGTGGCTGCCTCC
GCTTCTGCGGCTGCCTCCGCCTCTGGCATTGGGGTGTCTCGCTCGGTTAC
TATCGGCGCCACTTCACCACCCTCTATGTCGGCCACAGTCAACCCCACTG
CCGCTAGCGGACACGGAGGCGTTGACCAGGCTAGGAACATTGAGGCCGGG
GTGGACAACGTTGTTAACAAGGCGATCGACGAAGCGGAGGAGAGGAAGGC
CGGCAGCATTGTGGACACGAAGAATGAGATCGACGATAACGGTGAGCACG
ACGAGGATGAAGGCAATGTCGCGACGTACTAA
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Coding sequence (CDS) from alignment at Scaffold_95:24103..25034-

>EsuBft909_3a-0001 ID=EsuBft909_3a-0001|Name=EsuBft909_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_95:24103..25034- (Ectocarpus subulatus male Bft15b)
ATGGACGTTACGCCCGCCAATCCTCTGGGACAGTGGATTTCTTGGGCCCT
ACGCTCCTGTGGTTCCATTCGTCCGGCTCGTGAAGATACTCTTCCTACTT
GGGACAGCATGGCGGAGTACGATGAGGCCGGGCACACCATGAGGCCGTCG
AGGGTGTTGTCGTCGGTTTTCCAGTCCATGGCCGAAGAAGACCCTGCCGC
GTCGAGAACTTTCTACTCAACCTCCTCTCCCAGTGCCACGTCTGTCCCCC
GTTCGACGTCCGCATCGGCTCGTGCGGCTGCCGCTGCTTTTGTGGCTGCC
TCCGCTTCTGCGGCTGCCTCCGCCTCTGGCATTGGGGTGTCTCGCTCGGT
TACTATCGGCGCCACTTCACCACCCTCTATGTCGGCCACAGTCAACCCCA
CTGCCGCTAGCGGACACGGAGGCGTTGACCAGGCTAGGAACATTGAGGCC
GGGGTGGACAACGTTGTTAACAAGGCGATCGACGAAGCGGAGGAGAGGAA
GGCCGGCAGCATTGTGGACACGAAGAATGAGATCGACGATAACGGTGAGC
ACGACGAGGATGAAGGCAATGTCGCGACGTACTAA
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