EsuBft905_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft905_8a-0001
Unique Name	EsuBft905_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_477	contig	Scaffold_477:13476..15969 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LPL9
ProteomeId	EsuBft905_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	2367
Hectar predicted targeting category	other localisation
Evalue	8.18e-141
EggNOG OGs	2EUDG@1\|root,2SWJG@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft905_8a	EsuBft905_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_477 13476..15969 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft905_8a-0001-exon	agat-exon-26086	Ectocarpus subulatus male Bft15b	exon	Scaffold_477 13476..14812 +
EsuBft905_8a-0001-exon	EsuBft905_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_477 14864..14910 +
EsuBft905_8a-0001-exon	agat-exon-26085	Ectocarpus subulatus male Bft15b	exon	Scaffold_477 14987..15969 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft905_8a-0001-cds	EsuBft905_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_477 13476..14812 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft905_8a-0001	EsuBft905_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_477 13476..15969 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_477:13476..15969+
coding sequence from alignment at Scaffold_477:13476..15969+

spliced messenger RNA

>EsuBft905_8a-0001 ID=EsuBft905_8a-0001|Name=EsuBft905_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2367bp|location=Sequence derived from alignment at Scaffold_477:13476..15969+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACAACATAAACAACATCGTGATCGACGCAAGCAGCGGAGATGT
TGCAGTCAAATCTATGATCAAGAACATCATGCCGAACCTAAGCGAAAGCG
GCATTCTCAAAACAGTGCACCGCGTCCTCGGAGATTGCAACGGCCCAAAA
ATGTCCACGCGTCTGATGAATGGGCGGCTTGCGTGTGCCGCGACGCTCGA
GCTGTGCTTTGAGATTCTCGATACAATGACCGGGCCTCCGTGGCGCAAAT
GGCGTTCGGAGTCGGGGAATGCGTTCAAAGGGGCGCTGCGCGAGCGTGTT
GAGAGCGTTCGGTCCGCTAGCCAAACAGAACAACTCCAACTCCAGCCACC
ACCACAGCCACAGCCACCGCAGCAAGTCGGGATAAAGACGGCCGTCCTAC
AGAACGCTCTCCGATCCATCAACATACACGGCTCTGTGCGCATCGACGAT
GGATTAGGGAAAGCGTCCATCATCGACACCGTGCGCCTGATATCCCCAAC
GGCCTCTCCCGAATATGCTGCACAGATGTTCACACGCGTCCTTCAAAAGG
AGCGGGGGGATTGCGGAAACACTTCTGTGCGAGACGAACAGACGCCGACG
CCCATCGCCGACCGCGTTGACTACATCAGGATCAACGGTCGTGGGAAGGT
CACCCCCGTAAGCGACGCCAAAACCATCGTCGAGATCATTTGGCTGCTGC
CCTCGGGCGCGGCCAAAGAATTCAGGCGCCAGTCAGCCGAAACTATCTGC
CGTGTTTTGGGAGGAGATATCAGTCTTTGCGGAGAAATTGAGCAGCGCTG
CGCCCGCCTCCAGAGCACCGAGGAAGGCAGGGCTTACCAATCCTTTATGA
CTGACCAGGGTCCCGCCAAGAAGCAGCGAGCCGCCATGCCAGCCCGGTTC
GAATATGCGACGGCTGAGGAGAAGAGAGCCTACATTTCGATTGAGGCTAC
GACGAGCAAAGTCTTGGCCAAGAAAGCCTTGGTCCTGAGATATATTGACG
TGTTCGAGACATGCAAGGAGAAGCTGAAGTCGGTTGGACAGTTCGACGAA
CGCGCTCAGATTGAGTTTGCAGATAGGATCAAGGACGTCCAGCGGAGGGC
GACGAGGGTCGACAACATGATTACCGCCGCGCCTGCTGTCGATACTTCAC
CAGTTTCCGTGTGTGTGGCTATGCCGGTAGACGACACCATCGACACGGAG
ACGGGTCTGCTTATTGAAACCCCGAAGTGTAGCCCGAGTGTTCGGGGCCC
GGAGACGTCGATTTGCGTCGAAGCTGGGAAAATGGGCATTGGTGTGGGCG
AAAAAGCCGGTCAGGTCGGCAAGGTTGTTAAGCGGCTCACCACGTTTAGG
GGGAAGCCCTTCAGTGAAAACACTTACTATGCCCTTTTCGCGGTGCTGAA
AGGCGTGCACCGCGTCTTGAAGGACTCCGGCGCCTCGGTGGACACGACCC
TCATCAACGGACGTTTCACCAAAACAGCCACGGTTGACCTTTGCTGCGAT
ATTCTCGACAATATGAGTGGTGTGAAGTGGGACCAGTGGCGCCAGTCGTC
GGGTCCGGCCTTCAAGCGTGCTCTGCGCGAGCGCGTCGCCAGCGTTGTCT
CCTCCGGTCAAGTCGAGCAAGCTCACCCCCCGGTGCAGCAGGTGGAGGAA
CAGCAGGTGGAGGGAGTCGAGACGAAGGCAGTCGTCCTGCGCAAGGCGCT
CAGGGCCATGAACATCGAAGGGTCGGTTCGGGTTGATGAGCGGACGGGGA
TGGTTTCCGGCATCGACGTCATCAAGATGCTGTGCCCCGAGAAGAACGAT
GACTACGCCAAAATCGCCCTTGCCCGTATTATTGCTAGGGACGACCGCGA
GCCATCAATCAAATCCCGTGTGTCGTACATCAAGATTAACGGCTCCGGTC
ATAAATCACCTGTTACCGACTTCAATACACTGGTGGAGATAATTTGGATG
TTGCCCGCCGGCGCCTCCCGAGAGTTTCGTCGTAAATCTGCGGAAACTAT
TTGCCGAGTGATGGGGGGAGATCTATCTCTGTGCCGTCAGATCGAGCAGA
ACGCGTTGGGGTGGAATTGTGTCGACGGGGGGGAAGCCATCCAACAGGCT
TTGCTTAGGCCGGTGAAGAACATTGAAGACTGTGTGACAGAGAGGGTGAG
GGAATGCGTCGTTAGAGACGCCCTCGCTTTTGTTGTCGGTGGAACAACCG
AAGTTGAAACACCTTCGGGATACATCGATGTTTTGAGCGAAACTGAAGTG
ATCGAGGTGAAGTACTATCGGAATTGGAAGGAAGGGCTCGGACAGGTGCT
CCCGTACCAGTCACACTACCCTCGTCTGTCCAGGCGCCTGCACCTTTTCG
CACATAGTGTGTGGTGA

protein sequence of EsuBft905_8a-0001

>EsuBft905_8 ID=EsuBft905_8|Name=EsuBft905_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=788bp
MNNNINNIVIDASSGDVAVKSMIKNIMPNLSESGILKTVHRVLGDCNGPK
MSTRLMNGRLACAATLELCFEILDTMTGPPWRKWRSESGNAFKGALRERV
ESVRSASQTEQLQLQPPPQPQPPQQVGIKTAVLQNALRSINIHGSVRIDD
GLGKASIIDTVRLISPTASPEYAAQMFTRVLQKERGDCGNTSVRDEQTPT
PIADRVDYIRINGRGKVTPVSDAKTIVEIIWLLPSGAAKEFRRQSAETIC
RVLGGDISLCGEIEQRCARLQSTEEGRAYQSFMTDQGPAKKQRAAMPARF
EYATAEEKRAYISIEATTSKVLAKKALVLRYIDVFETCKEKLKSVGQFDE
RAQIEFADRIKDVQRRATRVDNMITAAPAVDTSPVSVCVAMPVDDTIDTE
TGLLIETPKCSPSVRGPETSICVEAGKMGIGVGEKAGQVGKVVKRLTTFR
GKPFSENTYYALFAVLKGVHRVLKDSGASVDTTLINGRFTKTATVDLCCD
ILDNMSGVKWDQWRQSSGPAFKRALRERVASVVSSGQVEQAHPPVQQVEE
QQVEGVETKAVVLRKALRAMNIEGSVRVDERTGMVSGIDVIKMLCPEKND
DYAKIALARIIARDDREPSIKSRVSYIKINGSGHKSPVTDFNTLVEIIWM
LPAGASREFRRKSAETICRVMGGDLSLCRQIEQNALGWNCVDGGEAIQQA
LLRPVKNIEDCVTERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEV
IEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAHSVW

mRNA from alignment at Scaffold_477:13476..15969+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft905_8a-0001 ID=EsuBft905_8a-0001|Name=EsuBft905_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2494bp|location=Sequence derived from alignment at Scaffold_477:13476..15969+ (Ectocarpus subulatus male Bft15b)
ATGAACAACAACATAAACAACATCGTGATCGACGCAAGCAGCGGAGATGT
TGCAGTCAAATCTATGATCAAGAACATCATGCCGAACCTAAGCGAAAGCG
GCATTCTCAAAACAGTGCACCGCGTCCTCGGAGATTGCAACGGCCCAAAA
ATGTCCACGCGTCTGATGAATGGGCGGCTTGCGTGTGCCGCGACGCTCGA
GCTGTGCTTTGAGATTCTCGATACAATGACCGGGCCTCCGTGGCGCAAAT
GGCGTTCGGAGTCGGGGAATGCGTTCAAAGGGGCGCTGCGCGAGCGTGTT
GAGAGCGTTCGGTCCGCTAGCCAAACAGAACAACTCCAACTCCAGCCACC
ACCACAGCCACAGCCACCGCAGCAAGTCGGGATAAAGACGGCCGTCCTAC
AGAACGCTCTCCGATCCATCAACATACACGGCTCTGTGCGCATCGACGAT
GGATTAGGGAAAGCGTCCATCATCGACACCGTGCGCCTGATATCCCCAAC
GGCCTCTCCCGAATATGCTGCACAGATGTTCACACGCGTCCTTCAAAAGG
AGCGGGGGGATTGCGGAAACACTTCTGTGCGAGACGAACAGACGCCGACG
CCCATCGCCGACCGCGTTGACTACATCAGGATCAACGGTCGTGGGAAGGT
CACCCCCGTAAGCGACGCCAAAACCATCGTCGAGATCATTTGGCTGCTGC
CCTCGGGCGCGGCCAAAGAATTCAGGCGCCAGTCAGCCGAAACTATCTGC
CGTGTTTTGGGAGGAGATATCAGTCTTTGCGGAGAAATTGAGCAGCGCTG
CGCCCGCCTCCAGAGCACCGAGGAAGGCAGGGCTTACCAATCCTTTATGA
CTGACCAGGGTCCCGCCAAGAAGCAGCGAGCCGCCATGCCAGCCCGGTTC
GAATATGCGACGGCTGAGGAGAAGAGAGCCTACATTTCGATTGAGGCTAC
GACGAGCAAAGTCTTGGCCAAGAAAGCCTTGGTCCTGAGATATATTGACG
TGTTCGAGACATGCAAGGAGAAGCTGAAGTCGGTTGGACAGTTCGACGAA
CGCGCTCAGATTGAGTTTGCAGATAGGATCAAGGACGTCCAGCGGAGGGC
GACGAGGGTCGACAACATGATTACCGCCGCGCCTGCTGTCGATACTTCAC
CAGTTTCCGTGTGTGTGGCTATGCCGGTAGACGACACCATCGACACGGAG
ACGGGTCTGCTTATTGAAACCCCGAAGTGTAGCCCGAGTGTTCGGGGCCC
GGAGACGTCGATTTGCGTCGAAGCTGGGAAAATGGGCATTGGTGTGGGCG
AAAAAGCCGGTCAGGTCGGCAAGGTTGTTAAGCGGCTGTAATCCGAGCGC
TACGGACAGGAAGCTGGTCGCAATATACCCAAGCGCAGCACCACGTTTAG
GGGGAAGCCCTTCAGTGAAAACACTTACTATGCCCGTGATTCGAACCTGA
TTCAACGTGCCATTGGCGTCTTGTGTGCCCCGGCGGCGACGCCCTGATTT
GTTGCCAACAGTTTTCGCGGTGCTGAAAGGCGTGCACCGCGTCTTGAAGG
ACTCCGGCGCCTCGGTGGACACGACCCTCATCAACGGACGTTTCACCAAA
ACAGCCACGGTTGACCTTTGCTGCGATATTCTCGACAATATGAGTGGTGT
GAAGTGGGACCAGTGGCGCCAGTCGTCGGGTCCGGCCTTCAAGCGTGCTC
TGCGCGAGCGCGTCGCCAGCGTTGTCTCCTCCGGTCAAGTCGAGCAAGCT
CACCCCCCGGTGCAGCAGGTGGAGGAACAGCAGGTGGAGGGAGTCGAGAC
GAAGGCAGTCGTCCTGCGCAAGGCGCTCAGGGCCATGAACATCGAAGGGT
CGGTTCGGGTTGATGAGCGGACGGGGATGGTTTCCGGCATCGACGTCATC
AAGATGCTGTGCCCCGAGAAGAACGATGACTACGCCAAAATCGCCCTTGC
CCGTATTATTGCTAGGGACGACCGCGAGCCATCAATCAAATCCCGTGTGT
CGTACATCAAGATTAACGGCTCCGGTCATAAATCACCTGTTACCGACTTC
AATACACTGGTGGAGATAATTTGGATGTTGCCCGCCGGCGCCTCCCGAGA
GTTTCGTCGTAAATCTGCGGAAACTATTTGCCGAGTGATGGGGGGAGATC
TATCTCTGTGCCGTCAGATCGAGCAGAACGCGTTGGGGTGGAATTGTGTC
GACGGGGGGGAAGCCATCCAACAGGCTTTGCTTAGGCCGGTGAAGAACAT
TGAAGACTGTGTGACAGAGAGGGTGAGGGAATGCGTCGTTAGAGACGCCC
TCGCTTTTGTTGTCGGTGGAACAACCGAAGTTGAAACACCTTCGGGATAC
ATCGATGTTTTGAGCGAAACTGAAGTGATCGAGGTGAAGTACTATCGGAA
TTGGAAGGAAGGGCTCGGACAGGTGCTCCCGTACCAGTCACACTACCCTC
GTCTGTCCAGGCGCCTGCACCTTTTCGCACATAGTGTGTGGTGA

Coding sequence (CDS) from alignment at Scaffold_477:13476..15969+

>EsuBft905_8a-0001 ID=EsuBft905_8a-0001|Name=EsuBft905_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2367bp|location=Sequence derived from alignment at Scaffold_477:13476..15969+ (Ectocarpus subulatus male Bft15b)
ATGAACAACAACATAAACAACATCGTGATCGACGCAAGCAGCGGAGATGT
TGCAGTCAAATCTATGATCAAGAACATCATGCCGAACCTAAGCGAAAGCG
GCATTCTCAAAACAGTGCACCGCGTCCTCGGAGATTGCAACGGCCCAAAA
ATGTCCACGCGTCTGATGAATGGGCGGCTTGCGTGTGCCGCGACGCTCGA
GCTGTGCTTTGAGATTCTCGATACAATGACCGGGCCTCCGTGGCGCAAAT
GGCGTTCGGAGTCGGGGAATGCGTTCAAAGGGGCGCTGCGCGAGCGTGTT
GAGAGCGTTCGGTCCGCTAGCCAAACAGAACAACTCCAACTCCAGCCACC
ACCACAGCCACAGCCACCGCAGCAAGTCGGGATAAAGACGGCCGTCCTAC
AGAACGCTCTCCGATCCATCAACATACACGGCTCTGTGCGCATCGACGAT
GGATTAGGGAAAGCGTCCATCATCGACACCGTGCGCCTGATATCCCCAAC
GGCCTCTCCCGAATATGCTGCACAGATGTTCACACGCGTCCTTCAAAAGG
AGCGGGGGGATTGCGGAAACACTTCTGTGCGAGACGAACAGACGCCGACG
CCCATCGCCGACCGCGTTGACTACATCAGGATCAACGGTCGTGGGAAGGT
CACCCCCGTAAGCGACGCCAAAACCATCGTCGAGATCATTTGGCTGCTGC
CCTCGGGCGCGGCCAAAGAATTCAGGCGCCAGTCAGCCGAAACTATCTGC
CGTGTTTTGGGAGGAGATATCAGTCTTTGCGGAGAAATTGAGCAGCGCTG
CGCCCGCCTCCAGAGCACCGAGGAAGGCAGGGCTTACCAATCCTTTATGA
CTGACCAGGGTCCCGCCAAGAAGCAGCGAGCCGCCATGCCAGCCCGGTTC
GAATATGCGACGGCTGAGGAGAAGAGAGCCTACATTTCGATTGAGGCTAC
GACGAGCAAAGTCTTGGCCAAGAAAGCCTTGGTCCTGAGATATATTGACG
TGTTCGAGACATGCAAGGAGAAGCTGAAGTCGGTTGGACAGTTCGACGAA
CGCGCTCAGATTGAGTTTGCAGATAGGATCAAGGACGTCCAGCGGAGGGC
GACGAGGGTCGACAACATGATTACCGCCGCGCCTGCTGTCGATACTTCAC
CAGTTTCCGTGTGTGTGGCTATGCCGGTAGACGACACCATCGACACGGAG
ACGGGTCTGCTTATTGAAACCCCGAAGTGTAGCCCGAGTGTTCGGGGCCC
GGAGACGTCGATTTGCGTCGAAGCTGGGAAAATGGGCATTGGTGTGGGCG
AAAAAGCCGGTCAGGTCGGCAAGGTTGTTAAGCGGCTCACCACGTTTAGG
GGGAAGCCCTTCAGTGAAAACACTTACTATGCCCTTTTCGCGGTGCTGAA
AGGCGTGCACCGCGTCTTGAAGGACTCCGGCGCCTCGGTGGACACGACCC
TCATCAACGGACGTTTCACCAAAACAGCCACGGTTGACCTTTGCTGCGAT
ATTCTCGACAATATGAGTGGTGTGAAGTGGGACCAGTGGCGCCAGTCGTC
GGGTCCGGCCTTCAAGCGTGCTCTGCGCGAGCGCGTCGCCAGCGTTGTCT
CCTCCGGTCAAGTCGAGCAAGCTCACCCCCCGGTGCAGCAGGTGGAGGAA
CAGCAGGTGGAGGGAGTCGAGACGAAGGCAGTCGTCCTGCGCAAGGCGCT
CAGGGCCATGAACATCGAAGGGTCGGTTCGGGTTGATGAGCGGACGGGGA
TGGTTTCCGGCATCGACGTCATCAAGATGCTGTGCCCCGAGAAGAACGAT
GACTACGCCAAAATCGCCCTTGCCCGTATTATTGCTAGGGACGACCGCGA
GCCATCAATCAAATCCCGTGTGTCGTACATCAAGATTAACGGCTCCGGTC
ATAAATCACCTGTTACCGACTTCAATACACTGGTGGAGATAATTTGGATG
TTGCCCGCCGGCGCCTCCCGAGAGTTTCGTCGTAAATCTGCGGAAACTAT
TTGCCGAGTGATGGGGGGAGATCTATCTCTGTGCCGTCAGATCGAGCAGA
ACGCGTTGGGGTGGAATTGTGTCGACGGGGGGGAAGCCATCCAACAGGCT
TTGCTTAGGCCGGTGAAGAACATTGAAGACTGTGTGACAGAGAGGGTGAG
GGAATGCGTCGTTAGAGACGCCCTCGCTTTTGTTGTCGGTGGAACAACCG
AAGTTGAAACACCTTCGGGATACATCGATGTTTTGAGCGAAACTGAAGTG
ATCGAGGTGAAGTACTATCGGAATTGGAAGGAAGGGCTCGGACAGGTGCT
CCCGTACCAGTCACACTACCCTCGTCTGTCCAGGCGCCTGCACCTTTTCG
CACATAGTGTGTGGTGA