EsuBft905_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft905_7a-0001
Unique Name	EsuBft905_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_477	contig	Scaffold_477:18129..20198 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft905_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	201
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft905_7a	EsuBft905_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_477 18129..20198 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft905_7a-0001-exon	agat-exon-26084	Ectocarpus subulatus male Bft15b	exon	Scaffold_477 18129..18277 +
EsuBft905_7a-0001-exon	EsuBft905_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_477 18335..20198 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft905_7a-0001-cds	EsuBft905_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_477 18129..18277 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft905_7a-0001	EsuBft905_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_477 18129..20198 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_477:18129..20198+
coding sequence from alignment at Scaffold_477:18129..20198+

spliced messenger RNA

>EsuBft905_7a-0001 ID=EsuBft905_7a-0001|Name=EsuBft905_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2013bp|location=Sequence derived from alignment at Scaffold_477:18129..20198+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGCAAGCAACAAAGCGCGCGAAGCTTTCATCGAGTGCAGGACT
TACCACTCTCTTGAGAGCTGGATTCGATCCTTCGGATGTTGCCACACTCT
CATCGCGCACCAAGGTTTCGTACAAATCCCCCGTGACCTTGAAAAATGTC
GGGGTACCATTCGACCGCCTATCCGACGCCGAGAAGCTCACCTGGACCGA
ATCTCTCCATGACAACAGCTGTTTGATGGGATATCTCGTCTATTCGCAGT
TGCTCCCATGTGCCGCCGAGAATCGATTTAAGCTCAAGTCAGGAAGCGCG
CACTGGAACGAACTGAATGTCTCGACAGACAGGGCAAGACTGGAGCAATG
CCGGGCCGCGTATGACAGGCTACGGAGGAATGGGTCTACTTTCTCCGCGT
TCCACGGACTCCCTTACAGCGTGGACATGACGAAAAGCGTGTTGGAGTAC
ATGGAGATAGATTTTGAACAGAGCGACTTGAGGCACATTTTTTTCTTTGG
CCGTGAGTTTGCTATGAAGTCATCGGAGCACGGGAAGATAAACGCCAGCT
CGGTGTACACCTCGTGCTCTAAAGCATTGTCTCTCATGTACTTCACCGTC
GTCATTCTGGGGCGGCCGTGCTGTCTCGAATCGGTCATATTGCCACTGTC
CGTGACGGAACGCTCTGTCTTGGAGCAGACGTGGGGTTGCCCGGGGACGC
ATCTTGACGGCCCCATCAACAAGTTTCAGACGAATTGGCGCGAGGTTTTC
CGTGCGATCGGCACGCCTCACAGGAACATCAACTATGTGTGTCTCGAGAG
AGCCACGGAGGAATGTTATATCGGTGGAAAACACGTAGCTGATTGCTTTG
CTTTGTACAATGCAACTCGTTCAGCTCCGGGGGACGCGAAGACCGTCACG
GCGTTGGTCAACCACTACAGGCTAAATTCCAAGATAGGCGTCGAGTCGGG
TGCTGTCGTGTTCGTTCTCGATATGCTAAGGGAAAAGCCCATGGAAGCCG
TCGGCAAGATCGACGGCTCTGTGCTGGGGGCGATCACTTCAACCTACGGG
AAGAGGGTGAGCCTCGACGTACAGGCGAGGTGCCTCGGTCTGCAAGCGGG
CGAGCACTCTCTGTTTGACTTCTCTGTGAGCAACAAGCTAGGGGAGATCA
TCAATCACGCTGACATGACGCTCTGGAAGGCCAGGAAACGACTGAAAGTC
GAGCTGAAGGTCAACGACAGCCTGGACCCGGCGGACATGAATAAGAAGAT
CAGCGAAGGCAAAATGCTCGATCCCTGTGACCCAGCATCGTCGGAGAAAA
TGCACGCAATGCTTCAGTCGATATCGGGGCAAGTTTGGCGACCGCTCAAG
ACCTTGATTGGAGAGACTTTCGGGGTAAGCATGGATCACCCATCCGCGTT
TCTACGGATATCCGACAAGGAGGCACACCAGCTATACGAGCACGCCAGCA
GAAAGGGTATGGTCTACACCGATGTCGCCAACTTTAATACGCTTCTGGTC
TTGAGCAACAGTTTCCAAAGATCCCAGGTTTTGCGCGAGGCAACGCTGAA
CGAGTTTGGACTTGTCCCAGACGGTACCTTCTACAGGCAGACTTTCAAGG
ATCGTGCGTTCAAAACTGCCGGCGCGTCAAGCGGTTCACCGCCCGTGAGT
CACTTCAACCTCTCCCCCGGTCAATCCATGATGGTACATTTCATTGCTGT
GGTCGGCCACCGCTTCTGCAATGCGAACATGAAGAACGATAAAAGGAAGC
TGCTTCTCAATCCGAAGGGGCAGGGGTATGCCCAGAATGACATTAATTCG
CCGTTCAAAAAGATTGGGGCGCACTGGCTAGGCCTTCCCAACTTCTGTGT
TCACACGTGTAGAACCTTCTGGGCTACGGCCGCCTTGTATTCGTGCCAGG
TCGATCCCTCGAACATAGAGGATTTTGGAAGCTTTTTGCAGGTGCCGAGT
TCCACGCTAAGGAGTAGCTATATGTCGGCCGCTGGGAATTCGGCGGCTCA
CAAGCTGGTTTAA

protein sequence of EsuBft905_7a-0001

>EsuBft905_7 ID=EsuBft905_7|Name=EsuBft905_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=670bp
MAPQATKRAKLSSSAGLTTLLRAGFDPSDVATLSSRTKVSYKSPVTLKNV
GVPFDRLSDAEKLTWTESLHDNSCLMGYLVYSQLLPCAAENRFKLKSGSA
HWNELNVSTDRARLEQCRAAYDRLRRNGSTFSAFHGLPYSVDMTKSVLEY
MEIDFEQSDLRHIFFFGREFAMKSSEHGKINASSVYTSCSKALSLMYFTV
VILGRPCCLESVILPLSVTERSVLEQTWGCPGTHLDGPINKFQTNWREVF
RAIGTPHRNINYVCLERATEECYIGGKHVADCFALYNATRSAPGDAKTVT
ALVNHYRLNSKIGVESGAVVFVLDMLREKPMEAVGKIDGSVLGAITSTYG
KRVSLDVQARCLGLQAGEHSLFDFSVSNKLGEIINHADMTLWKARKRLKV
ELKVNDSLDPADMNKKISEGKMLDPCDPASSEKMHAMLQSISGQVWRPLK
TLIGETFGVSMDHPSAFLRISDKEAHQLYEHASRKGMVYTDVANFNTLLV
LSNSFQRSQVLREATLNEFGLVPDGTFYRQTFKDRAFKTAGASSGSPPVS
HFNLSPGQSMMVHFIAVVGHRFCNANMKNDKRKLLLNPKGQGYAQNDINS
PFKKIGAHWLGLPNFCVHTCRTFWATAALYSCQVDPSNIEDFGSFLQVPS
STLRSSYMSAAGNSAAHKLV

mRNA from alignment at Scaffold_477:18129..20198+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft905_7a-0001 ID=EsuBft905_7a-0001|Name=EsuBft905_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2070bp|location=Sequence derived from alignment at Scaffold_477:18129..20198+ (Ectocarpus subulatus male Bft15b)
ATGGCTCCGCAAGCAACAAAGCGCGCGAAGCTTTCATCGAGTGCAGGACT
TACCACTCTCTTGAGAGCTGGATTCGATCCTTCGGATGTTGCCACACTCT
CATCGCGCACCAAGGTTTCGTACAAATCCCCCGTGACCTTGAAAAATGTG
TTCGACAGGCCGACCGAGTCTCAGGTTAAGATTTTCTACCGTTCGTGAAA
CCACAGCGGGGTACCATTCGACCGCCTATCCGACGCCGAGAAGCTCACCT
GGACCGAATCTCTCCATGACAACAGCTGTTTGATGGGATATCTCGTCTAT
TCGCAGTTGCTCCCATGTGCCGCCGAGAATCGATTTAAGCTCAAGTCAGG
AAGCGCGCACTGGAACGAACTGAATGTCTCGACAGACAGGGCAAGACTGG
AGCAATGCCGGGCCGCGTATGACAGGCTACGGAGGAATGGGTCTACTTTC
TCCGCGTTCCACGGACTCCCTTACAGCGTGGACATGACGAAAAGCGTGTT
GGAGTACATGGAGATAGATTTTGAACAGAGCGACTTGAGGCACATTTTTT
TCTTTGGCCGTGAGTTTGCTATGAAGTCATCGGAGCACGGGAAGATAAAC
GCCAGCTCGGTGTACACCTCGTGCTCTAAAGCATTGTCTCTCATGTACTT
CACCGTCGTCATTCTGGGGCGGCCGTGCTGTCTCGAATCGGTCATATTGC
CACTGTCCGTGACGGAACGCTCTGTCTTGGAGCAGACGTGGGGTTGCCCG
GGGACGCATCTTGACGGCCCCATCAACAAGTTTCAGACGAATTGGCGCGA
GGTTTTCCGTGCGATCGGCACGCCTCACAGGAACATCAACTATGTGTGTC
TCGAGAGAGCCACGGAGGAATGTTATATCGGTGGAAAACACGTAGCTGAT
TGCTTTGCTTTGTACAATGCAACTCGTTCAGCTCCGGGGGACGCGAAGAC
CGTCACGGCGTTGGTCAACCACTACAGGCTAAATTCCAAGATAGGCGTCG
AGTCGGGTGCTGTCGTGTTCGTTCTCGATATGCTAAGGGAAAAGCCCATG
GAAGCCGTCGGCAAGATCGACGGCTCTGTGCTGGGGGCGATCACTTCAAC
CTACGGGAAGAGGGTGAGCCTCGACGTACAGGCGAGGTGCCTCGGTCTGC
AAGCGGGCGAGCACTCTCTGTTTGACTTCTCTGTGAGCAACAAGCTAGGG
GAGATCATCAATCACGCTGACATGACGCTCTGGAAGGCCAGGAAACGACT
GAAAGTCGAGCTGAAGGTCAACGACAGCCTGGACCCGGCGGACATGAATA
AGAAGATCAGCGAAGGCAAAATGCTCGATCCCTGTGACCCAGCATCGTCG
GAGAAAATGCACGCAATGCTTCAGTCGATATCGGGGCAAGTTTGGCGACC
GCTCAAGACCTTGATTGGAGAGACTTTCGGGGTAAGCATGGATCACCCAT
CCGCGTTTCTACGGATATCCGACAAGGAGGCACACCAGCTATACGAGCAC
GCCAGCAGAAAGGGTATGGTCTACACCGATGTCGCCAACTTTAATACGCT
TCTGGTCTTGAGCAACAGTTTCCAAAGATCCCAGGTTTTGCGCGAGGCAA
CGCTGAACGAGTTTGGACTTGTCCCAGACGGTACCTTCTACAGGCAGACT
TTCAAGGATCGTGCGTTCAAAACTGCCGGCGCGTCAAGCGGTTCACCGCC
CGTGAGTCACTTCAACCTCTCCCCCGGTCAATCCATGATGGTACATTTCA
TTGCTGTGGTCGGCCACCGCTTCTGCAATGCGAACATGAAGAACGATAAA
AGGAAGCTGCTTCTCAATCCGAAGGGGCAGGGGTATGCCCAGAATGACAT
TAATTCGCCGTTCAAAAAGATTGGGGCGCACTGGCTAGGCCTTCCCAACT
TCTGTGTTCACACGTGTAGAACCTTCTGGGCTACGGCCGCCTTGTATTCG
TGCCAGGTCGATCCCTCGAACATAGAGGATTTTGGAAGCTTTTTGCAGGT
GCCGAGTTCCACGCTAAGGAGTAGCTATATGTCGGCCGCTGGGAATTCGG
CGGCTCACAAGCTGGTTTAA

Coding sequence (CDS) from alignment at Scaffold_477:18129..20198+

>EsuBft905_7a-0001 ID=EsuBft905_7a-0001|Name=EsuBft905_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2013bp|location=Sequence derived from alignment at Scaffold_477:18129..20198+ (Ectocarpus subulatus male Bft15b)
ATGGCTCCGCAAGCAACAAAGCGCGCGAAGCTTTCATCGAGTGCAGGACT
TACCACTCTCTTGAGAGCTGGATTCGATCCTTCGGATGTTGCCACACTCT
CATCGCGCACCAAGGTTTCGTACAAATCCCCCGTGACCTTGAAAAATGTC
GGGGTACCATTCGACCGCCTATCCGACGCCGAGAAGCTCACCTGGACCGA
ATCTCTCCATGACAACAGCTGTTTGATGGGATATCTCGTCTATTCGCAGT
TGCTCCCATGTGCCGCCGAGAATCGATTTAAGCTCAAGTCAGGAAGCGCG
CACTGGAACGAACTGAATGTCTCGACAGACAGGGCAAGACTGGAGCAATG
CCGGGCCGCGTATGACAGGCTACGGAGGAATGGGTCTACTTTCTCCGCGT
TCCACGGACTCCCTTACAGCGTGGACATGACGAAAAGCGTGTTGGAGTAC
ATGGAGATAGATTTTGAACAGAGCGACTTGAGGCACATTTTTTTCTTTGG
CCGTGAGTTTGCTATGAAGTCATCGGAGCACGGGAAGATAAACGCCAGCT
CGGTGTACACCTCGTGCTCTAAAGCATTGTCTCTCATGTACTTCACCGTC
GTCATTCTGGGGCGGCCGTGCTGTCTCGAATCGGTCATATTGCCACTGTC
CGTGACGGAACGCTCTGTCTTGGAGCAGACGTGGGGTTGCCCGGGGACGC
ATCTTGACGGCCCCATCAACAAGTTTCAGACGAATTGGCGCGAGGTTTTC
CGTGCGATCGGCACGCCTCACAGGAACATCAACTATGTGTGTCTCGAGAG
AGCCACGGAGGAATGTTATATCGGTGGAAAACACGTAGCTGATTGCTTTG
CTTTGTACAATGCAACTCGTTCAGCTCCGGGGGACGCGAAGACCGTCACG
GCGTTGGTCAACCACTACAGGCTAAATTCCAAGATAGGCGTCGAGTCGGG
TGCTGTCGTGTTCGTTCTCGATATGCTAAGGGAAAAGCCCATGGAAGCCG
TCGGCAAGATCGACGGCTCTGTGCTGGGGGCGATCACTTCAACCTACGGG
AAGAGGGTGAGCCTCGACGTACAGGCGAGGTGCCTCGGTCTGCAAGCGGG
CGAGCACTCTCTGTTTGACTTCTCTGTGAGCAACAAGCTAGGGGAGATCA
TCAATCACGCTGACATGACGCTCTGGAAGGCCAGGAAACGACTGAAAGTC
GAGCTGAAGGTCAACGACAGCCTGGACCCGGCGGACATGAATAAGAAGAT
CAGCGAAGGCAAAATGCTCGATCCCTGTGACCCAGCATCGTCGGAGAAAA
TGCACGCAATGCTTCAGTCGATATCGGGGCAAGTTTGGCGACCGCTCAAG
ACCTTGATTGGAGAGACTTTCGGGGTAAGCATGGATCACCCATCCGCGTT
TCTACGGATATCCGACAAGGAGGCACACCAGCTATACGAGCACGCCAGCA
GAAAGGGTATGGTCTACACCGATGTCGCCAACTTTAATACGCTTCTGGTC
TTGAGCAACAGTTTCCAAAGATCCCAGGTTTTGCGCGAGGCAACGCTGAA
CGAGTTTGGACTTGTCCCAGACGGTACCTTCTACAGGCAGACTTTCAAGG
ATCGTGCGTTCAAAACTGCCGGCGCGTCAAGCGGTTCACCGCCCGTGAGT
CACTTCAACCTCTCCCCCGGTCAATCCATGATGGTACATTTCATTGCTGT
GGTCGGCCACCGCTTCTGCAATGCGAACATGAAGAACGATAAAAGGAAGC
TGCTTCTCAATCCGAAGGGGCAGGGGTATGCCCAGAATGACATTAATTCG
CCGTTCAAAAAGATTGGGGCGCACTGGCTAGGCCTTCCCAACTTCTGTGT
TCACACGTGTAGAACCTTCTGGGCTACGGCCGCCTTGTATTCGTGCCAGG
TCGATCCCTCGAACATAGAGGATTTTGGAAGCTTTTTGCAGGTGCCGAGT
TCCACGCTAAGGAGTAGCTATATGTCGGCCGCTGGGAATTCGGCGGCTCA
CAAGCTGGTTTAA