EsuBft905_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft905_2a-0001
Unique NameEsuBft905_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_477contigScaffold_477:76924..79375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft905_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length150
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft905_2aEsuBft905_2aEctocarpus subulatus male Bft15bgeneScaffold_477 76924..79375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft905_2a-0001EsuBft905_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_477 76970..78819 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft905_2a-0001-exonagat-exon-26034Ectocarpus subulatus male Bft15bexonScaffold_477 76924..77344 +
EsuBft905_2a-0001-exonagat-exon-26035Ectocarpus subulatus male Bft15bexonScaffold_477 77824..78067 +
EsuBft905_2a-0001-exonagat-exon-26033Ectocarpus subulatus male Bft15bexonScaffold_477 78316..78371 +
EsuBft905_2a-0001-exonEsuBft905_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_477 78592..79375 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft905_2a-0001-exonagat-five_prime_utr-14875Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_477 76924..76969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft905_2a-0001-cdsEsuBft905_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_477 76970..77344 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft905_2a-0001-exonagat-three_prime_utr-22931Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_477 78820..79375 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft905_2a-0001 ID=EsuBft905_2a-0001|Name=EsuBft905_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1505bp|location=Sequence derived from alignment at Scaffold_477:76924..79375+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCACCAGGCCACACAGCACGCGCAAAAGCAGACCACACAGCAGACATGT
CCCTGATGGATCTCCTACAAGATTGCGGAGACGACGATGACGCCGGCAGT
GACATGGACGTGTGTATAGGAAGCGACCCTCCCGCCGCCGTGCCGGCGGT
GTTCGGAGGAACCAATAGCCTTCCGGCTGGCGGCACCTCCTTGGCACCCC
AAGAGGACGAAGCACAAGGGGCCGGTGACGAAGCACGAGGGGCTATGGAT
GGTACGCTAGACCCTATCACTAACGCTCAGAGCAAAACCGTTTCTGGTGG
CGATGGCATAAGACCTCTTCGTGAAGCAGCAGAACAAGGAGAGACGTCCG
ATACACCACAGAGGGCGGAGGGAGGCGCAGCTGGCCCAGCTCCTCCTGAG
GCTAGCGGGCGTACACCAACGGCTGGCAGTCCGGCGTACAGTGCCGAAGC
ACTGTCCGCAAGGCTTGCCATCATTCCTCTCGAGGGGAGCGTCGACGACG
TGGCGGCCGCAGTGGTGGAAGCATGCCAGGAGTTTGGAGCAGTGATGCGA
CGCTGCGACTCCAAGAAAAGCAAGAAAGAGGCTGGCGGTCGTCTGGTGGC
GGTTGGACTAGCGTGCAAGCACGCCATGCCGAATCGTCAGAAGGAGTACA
GGCAGGGAGATGCAGCGAACGGCGCCAAGAAACGGAAGTCCAGCAGCCAG
AGAACAAACTGCAATATGAAGGTGTACGTCCGATGGCCCGTTCAAGGTCC
GCGTTCCGACCACCCGTACCTGGCCTTCACTACGTTGGAGCACGATCACC
CGGTATCCCCCCACCCCCAAAAGACCCTGAAGCGCCGACGCCTCGGCGGA
AAAACGGGCGATACATGGGTTTCTGTCCCCCCCCCAAATGACCCCGATTT
TCGATTAATGGGCCTGTACCCTCGCGAAGACCCTAGTGCAGGAGAGTGAC
GACTGCCTTGTTGATGTTGCCACAACACGTTCGTCAGGAGGATTCCCTGA
ATGTCGCGGCTCAAGTTGTTTCTTTTCTCAACAAGGTATGCTTGCGGCAG
CTTCAGTGCACGACCCAGTTGGTATGGATCCAGATGAAAAGCCACGCGAG
AAAATAGCGACAGGCGCCCGCCCTTGCCCCGTGTGGATTTCGAAGCAGGC
AAACCGACGCTTGACGGACATCAGCTGACGTGTCCAGCCTTTTGCCCACA
ACGCATCAACACGCAGTAACTTCTGGTGGGCAGGTCGACACCGACGTGCG
CCGGGATTGAGCCACATCGATGTTGGTTATATATATATATTATAAGTTGT
GTAGTGTGGTGCTCAAGTCACATTACCACGTCGGAAAAGTGTCTTTCCGA
GGGGCATGGGGACATGTCACGGCATACTGCAGCAAGTGAACTTGTGTTGG
GCAAAGTGTAGCGAGCGCTTTCTGGCTGCTGTTTGGTGAAGGTGTTGGCG
TCAGTGGGGAAACATGCATAAATCAATGCACCGGGACTATTACGGTGGAA
CACAA
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protein sequence of EsuBft905_2a-0001

>EsuBft905_2 ID=EsuBft905_2|Name=EsuBft905_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=300bp
MSLMDLLQDCGDDDDAGSDMDVCIGSDPPAAVPAVFGGTNSLPAGGTSLA
PQEDEAQGAGDEARGAMDGTLDPITNAQSKTVSGGDGIRPLREAAEQGET
SDTPQRAEGGAAGPAPPEASGRTPTAGSPAYSAEALSARLAIIPLEGSVD
DVAAAVVEACQEFGAVMRRCDSKKSKKEAGGRLVAVGLACKHAMPNRQKE
YRQGDAANGAKKRKSSSQRTNCNMKVYVRWPVQGPRSDHPYLAFTTLEHD
HPVSPHPQKTLKRRRLGGKTGDTWVSVPPPNDPDFRLMGLYPREDPSAGE
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mRNA from alignment at Scaffold_477:76924..79375+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft905_2a-0001 ID=EsuBft905_2a-0001|Name=EsuBft905_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2452bp|location=Sequence derived from alignment at Scaffold_477:76924..79375+ (Ectocarpus subulatus male Bft15b)
CGCACCAGGCCACACAGCACGCGCAAAAGCAGACCACACAGCAGACATGT
CCCTGATGGATCTCCTACAAGATTGCGGAGACGACGATGACGCCGGCAGT
GACATGGACGTGTGTATAGGAAGCGACCCTCCCGCCGCCGTGCCGGCGGT
GTTCGGAGGAACCAATAGCCTTCCGGCTGGCGGCACCTCCTTGGCACCCC
AAGAGGACGAAGCACAAGGGGCCGGTGACGAAGCACGAGGGGCTATGGAT
GGTACGCTAGACCCTATCACTAACGCTCAGAGCAAAACCGTTTCTGGTGG
CGATGGCATAAGACCTCTTCGTGAAGCAGCAGAACAAGGAGAGACGTCCG
ATACACCACAGAGGGCGGAGGGAGGCGCAGCTGGCCCAGCTCCTCCTGAG
GCTAGCGGGCGTACACCAACGGTGAGGACGTGACAGCAGATGTTAATCAA
AGCTGGAGTTGTCTGGGCCTTCGCTGGGCCTTCGATGGTCGCGCTTCTGT
TCGCCAAACAACGCCGATGCATTTTGCCTGCACGGTCAAGTGCTTCTGCT
GCTGCTGCTACTGCTGTACTGCTGTGTACCGGTACTCGTTGCTGCTGCTG
CTGTACTCGTTGTGCTGCTGTGCTGCTGATAACTGCTGTGTGTTGCCTTC
AAAGCTTGCGACCAAATCAAACGCCAATGTATATAGACTGAACGGCCAGG
TGCTGCTGCTGCTGCTACTACTGCTGCTGTGTAGTGTATGGCCCTCCCGC
CGCATCTGCACCCATATGACACGGCACTGGTGCATTTCTCTGATGTTGGA
AACTGCCTTCGATCCTGCTGTCGGTGCATTTGTCTGATGTTGGAAACAAT
GCCTTCGATCCTGCTGTCGGTCGGGCGTATGTTGCGTGATGTGGTTTCAG
GCTGGCAGTCCGGCGTACAGTGCCGAAGCACTGTCCGCAAGGCTTGCCAT
CATTCCTCTCGAGGGGAGCGTCGACGACGTGGCGGCCGCAGTGGTGGAAG
CATGCCAGGAGTTTGGAGCAGTGATGCGACGCTGCGACTCCAAGAAAAGC
AAGAAAGAGGCTGGCGGTCGTCTGGTGGCGGTTGGACTAGCGTGCAAGCA
CGCCATGCCGAATCGTCAGAAGGAGTACAGGCAGGGAGATGCAGGTGAGG
TCCTCAAAACCTATACCTTGTCCGTGCGCACATGTGTGTGGGCATTTTGT
GGTAGTTTGAGCTGGTCGGAAACGACGGTCGCGAAGGATTAAGGACAATG
TTATTGTTTGGGCAGACATAGGGATGAGTTGTGCCGACGCTGCTCGAAAC
CGGCAACGACCTGTCGAAGGCGTAATCGTGTTCTGTCCCTATCGCTTGTT
GTGTTTTGCGCTGCGCGTACCACGTCGCATGTGCATCATCAGCGAACGGC
GCCAAGAAACGGAAGTCCAGCAGCCAGAGAACAAACTGCAATATGAAGGT
GAGAGAAGTGTAACGTGCGCGTGGGTTATTGGTTCGTGGTGTGCGCGCGG
GCTGTTGGTCCGTGAAAAGTAGGATAGCCGATGTGGTACGTCGTGGTAGA
GACGGCCGTTCGTGTAGGACTTCTGCCATTGGAGTGTTCGATCGAGGATC
TTGAATGTATCATTTTAATAACATTTCGATGATCATTTTGTTGGGTGTTT
TGTTGCTGCAAATGCCAGGTGTACGTCCGATGGCCCGTTCAAGGTCCGCG
TTCCGACCACCCGTACCTGGCCTTCACTACGTTGGAGCACGATCACCCGG
TATCCCCCCACCCCCAAAAGACCCTGAAGCGCCGACGCCTCGGCGGAAAA
ACGGGCGATACATGGGTTTCTGTCCCCCCCCCAAATGACCCCGATTTTCG
ATTAATGGGCCTGTACCCTCGCGAAGACCCTAGTGCAGGAGAGTGACGAC
TGCCTTGTTGATGTTGCCACAACACGTTCGTCAGGAGGATTCCCTGAATG
TCGCGGCTCAAGTTGTTTCTTTTCTCAACAAGGTATGCTTGCGGCAGCTT
CAGTGCACGACCCAGTTGGTATGGATCCAGATGAAAAGCCACGCGAGAAA
ATAGCGACAGGCGCCCGCCCTTGCCCCGTGTGGATTTCGAAGCAGGCAAA
CCGACGCTTGACGGACATCAGCTGACGTGTCCAGCCTTTTGCCCACAACG
CATCAACACGCAGTAACTTCTGGTGGGCAGGTCGACACCGACGTGCGCCG
GGATTGAGCCACATCGATGTTGGTTATATATATATATTATAAGTTGTGTA
GTGTGGTGCTCAAGTCACATTACCACGTCGGAAAAGTGTCTTTCCGAGGG
GCATGGGGACATGTCACGGCATACTGCAGCAAGTGAACTTGTGTTGGGCA
AAGTGTAGCGAGCGCTTTCTGGCTGCTGTTTGGTGAAGGTGTTGGCGTCA
GTGGGGAAACATGCATAAATCAATGCACCGGGACTATTACGGTGGAACAC
AA
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Coding sequence (CDS) from alignment at Scaffold_477:76924..79375+

>EsuBft905_2a-0001 ID=EsuBft905_2a-0001|Name=EsuBft905_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=903bp|location=Sequence derived from alignment at Scaffold_477:76924..79375+ (Ectocarpus subulatus male Bft15b)
ATGTCCCTGATGGATCTCCTACAAGATTGCGGAGACGACGATGACGCCGG
CAGTGACATGGACGTGTGTATAGGAAGCGACCCTCCCGCCGCCGTGCCGG
CGGTGTTCGGAGGAACCAATAGCCTTCCGGCTGGCGGCACCTCCTTGGCA
CCCCAAGAGGACGAAGCACAAGGGGCCGGTGACGAAGCACGAGGGGCTAT
GGATGGTACGCTAGACCCTATCACTAACGCTCAGAGCAAAACCGTTTCTG
GTGGCGATGGCATAAGACCTCTTCGTGAAGCAGCAGAACAAGGAGAGACG
TCCGATACACCACAGAGGGCGGAGGGAGGCGCAGCTGGCCCAGCTCCTCC
TGAGGCTAGCGGGCGTACACCAACGGCTGGCAGTCCGGCGTACAGTGCCG
AAGCACTGTCCGCAAGGCTTGCCATCATTCCTCTCGAGGGGAGCGTCGAC
GACGTGGCGGCCGCAGTGGTGGAAGCATGCCAGGAGTTTGGAGCAGTGAT
GCGACGCTGCGACTCCAAGAAAAGCAAGAAAGAGGCTGGCGGTCGTCTGG
TGGCGGTTGGACTAGCGTGCAAGCACGCCATGCCGAATCGTCAGAAGGAG
TACAGGCAGGGAGATGCAGCGAACGGCGCCAAGAAACGGAAGTCCAGCAG
CCAGAGAACAAACTGCAATATGAAGGTGTACGTCCGATGGCCCGTTCAAG
GTCCGCGTTCCGACCACCCGTACCTGGCCTTCACTACGTTGGAGCACGAT
CACCCGGTATCCCCCCACCCCCAAAAGACCCTGAAGCGCCGACGCCTCGG
CGGAAAAACGGGCGATACATGGGTTTCTGTCCCCCCCCCAAATGACCCCG
ATTTTCGATTAATGGGCCTGTACCCTCGCGAAGACCCTAGTGCAGGAGAG
TGA
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