EsuBft904_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft904_5a-0001
Unique NameEsuBft904_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_553contigScaffold_553:913337..916537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FLV0
ProteomeIdEsuBft904_5
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length183
Hectar predicted targeting categoryother localisation
Evalue4.74e-228
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K17710
Descriptionendonuclease activity
COG categoryS
BRITEko00000,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft904_5aEsuBft904_5aEctocarpus subulatus male Bft15bgeneScaffold_553 913337..916537 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft904_5a-0001-exonagat-exon-64269Ectocarpus subulatus male Bft15bexonScaffold_553 913337..913474 +
EsuBft904_5a-0001-exonagat-exon-64270Ectocarpus subulatus male Bft15bexonScaffold_553 913889..914113 +
EsuBft904_5a-0001-exonEsuBft904_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_553 915068..916537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft904_5a-0001-cdsEsuBft904_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_553 913337..913474 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft904_5a-0001-exonagat-three_prime_utr-22928Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_553 915881..916537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft904_5a-0001EsuBft904_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_553 913337..915880 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft904_5a-0001 ID=EsuBft904_5a-0001|Name=EsuBft904_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1833bp|location=Sequence derived from alignment at Scaffold_553:913337..916537+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAGCTCGGACTGCTACGCGCCGTTGGTGGAGGCCTACGCGCAGGC
GTCCATGTGGGAGAGGGCGATCGAAGCCTACCAGGAGGGGTTCGTGGTTG
GGCGGGAGGGCGGTGAAGCGGGACCGGTGAAGTATCGGGTGTACGAGTGC
GTGCTGAAGGCGTGCGTCGAGGTTAGCGACGGCCGCACTGCATTAGAGGT
GATCGGCCGTCAGGCTGCGGAGCCGAAAGCGTTGCAGAAGATGTCGTCTA
CGATCACCACCGAGGGGGAGGGTAAGGGGGCGGAGCTCAGCGGCGGCCCC
CCGGATCGCCGGTGCTGGTGCCTGGCCGCGGAGGCGTTGGGGAGAGCGGG
GATGATCAACGAGGGCCACCGCGTGCTCATGGCGATGGTCGACTCCGGGA
TCCCGCTCCGAGAGTCTACCAAGACGGACGTGCCCTCCCTGATGCCAGTG
CCGACGACGGCTGGTGGCGGTTTCGAGTGGAACCAACGCCGGCGACGCAG
ACGCCCCAGAAGACGACGACGACAGCGGCGACACCAACAACAAGGGGATC
CTGGCCTACCGCCCCCGGCCGCCGTGGCCGAGATGCAGGAGGCGGTGGTT
CGAGAGCGCCTGGGTTTGTTTTCCTCCTGGGAGGACGGCAGGGGAGGGGG
CTCCGCGGTGACCGGCGGCCCGAGAGAGTCGCGGAACGCCGTCCAGGTTT
CCAAGAACTACCTGAGTGGCGTGGAGTTTCCCAAGGGCGTCGTCAACGGG
GAGGGGTGCACCGCGGCTGCGGTGGCGGCGGCGACGAAAAGCGGGGAGAA
GACGCTCGGGATGGGGTGGCTGCTGGCGAACGACCTTACTTCGGAGAAGT
CAGAGATGGAGCGCGGCGTGCAGGAGGGCGGGCTGGAGAGAAAGCGGCGG
CGCATGAGAGAGTTTTCCTTGAAAAGAAGGGAACAGCAGAAGAAACTACA
GCGCATCCGTACGACAGGTGCTGGGGATAGAAGTGGCAGAATCAATGGGG
GCTTGCCCGTGGGAAAGGCCGATGATGCCGGGGTGGGGGTCGCCGCAGGG
TTAGACTTGAGGCCGGGAGGTAGGAGAGGCAGGAACGAGGCGCTGACGTT
AAGGATGCGGGTGAGAGGGAAAAGAATGGGGATTTTGAGGAGTTTTAGAG
GAGCGAATGATAGACCGAGGCGGTAAGATAGAGTACGAAGTGTTGGTGAT
GAAGCTCGACCGGAAGTGTTGTAGACGACGGAGTTCACTGACTGGCGGCT
GATTTGGCGGTGCAACGAATGAAGCGGATGTACAGCAGAGAGGAATGGTT
CCTCGGTGGGGTTGGAGAGTTTTTTGCTAACCGCAAATCAGCCGCCGTTA
GATTCTCAGGGCATTGCCTCTGGTGTGCTAGAAACTAGGCAACGAGCTGC
TGCTTTGTTTGAATTTCTACATAGAGTTGATTTGCCATTTTTTGGTCGTT
CCCATGTTGGTGTGAGGCGATGCGCGCCCCACGCCTCTGTTTCGCATAAA
TATTTAATGTTTGTTTGGAGTCGATCGATTGTATTTATCGAAGAAAGCAG
CTTGCAACGCATTTGTTGCTTATGTTCTGGCAAATCAACTTCTACAAGAA
AACTCTTTATGACTTCATGCCCCCCCATTGGCTACTACTGTGGTATGGAC
AACATGCCGGTGCATCTGCGTAGGCCTACGCTATTTGTTCGCCGGCTGAC
TGCGTCAAACACCGCCCATATCTTCCAAACATGGTACCTTCGCCGTTCGT
GCCACGGAGACGGTAGTACTGCTTGTTGGCGGGTAAGGGTTCATCGGATG
CGCTTCTGCGTACACTAGGTCACGCGGAGGTAC
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protein sequence of EsuBft904_5a-0001

>EsuBft904_5 ID=EsuBft904_5|Name=EsuBft904_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=391bp
MLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYEC
VLKACVEVSDGRTALEVIGRQAAEPKALQKMSSTITTEGEGKGAELSGGP
PDRRCWCLAAEALGRAGMINEGHRVLMAMVDSGIPLRESTKTDVPSLMPV
PTTAGGGFEWNQRRRRRRPRRRRRQRRHQQQGDPGLPPPAAVAEMQEAVV
RERLGLFSSWEDGRGGGSAVTGGPRESRNAVQVSKNYLSGVEFPKGVVNG
EGCTAAAVAAATKSGEKTLGMGWLLANDLTSEKSEMERGVQEGGLERKRR
RMREFSLKRREQQKKLQRIRTTGAGDRSGRINGGLPVGKADDAGVGVAAG
LDLRPGGRRGRNEALTLRMRVRGKRMGILRSFRGANDRPRR
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mRNA from alignment at Scaffold_553:913337..916537+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft904_5a-0001 ID=EsuBft904_5a-0001|Name=EsuBft904_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3201bp|location=Sequence derived from alignment at Scaffold_553:913337..916537+ (Ectocarpus subulatus male Bft15b)
ATGTTGAGCTCGGACTGCTACGCGCCGTTGGTGGAGGCCTACGCGCAGGC
GTCCATGTGGGAGAGGGCGATCGAAGCCTACCAGGAGGGGTTCGTGGTTG
GGCGGGAGGGCGGTGAAGCGGGACCGGTGAAGTATCGGGTGAGATTATTA
CGAAGGCTAGAGGGCCGGGTTATGTACTATCTATGGAGTTGCAGTTTTTT
CTGGTTGGCTTGTTAGGAACTTTTACTCGGGGGGGGGGAGGTCCCGCGTG
AAGGTTGCGACGGTGCGGCTTGGGTGTAGTTTCGGCTGCCTGTTGCTGTG
TACTGCGCTTACATCGTCCAAATAGCTTGCACCAGTCTTGCGCGGCGCAA
AGGTTCGTAGCCTGCCCTTGGCGAGCACCCACCCTCGCTCCCAGCGTCCT
CTTGGAGCCCCAACTTGGTCGCAACATCTTGAAGGGGGTGGGCTGGAAAG
AGTTGGTACGCCACGCGCCTGCTTTTGACGTGCTCCCGTGCCTGCCGGGT
AAGGAATAACGAGCCGTTCGTTGCCCACGGGTCCTCCCTCAACTCGAACC
AGGTGTACGAGTGCGTGCTGAAGGCGTGCGTCGAGGTTAGCGACGGCCGC
ACTGCATTAGAGGTGATCGGCCGTCAGGCTGCGGAGCCGAAAGCGTTGCA
GAAGATGTCGTCTACGATCACCACCGAGGGGGAGGGTAAGGGGGCGGAGC
TCAGCGGCGGCCCCCCGGATCGCCGGTGCTGGTGCCTGGCCGCGGAGGCG
TTGGGGAGAGCGGGGATGATCAACGAGGTGCGGTAAAGTGCCCTTGGACG
ATAACCCTTGTTCGCCGTATACATAGCTGACGATGTGTTTTTTGTGCTAT
ACAATACCGTATCAGGAAGATGGGGCACAAAAAAATGAAAACAAGAAAAA
AGGACCGGTGTTTACGCCCTGCTGTGTGAACCTGGATTGTTGTACTTGTA
CGAAAAAATACGCTGAAAAAAATAGAATTCTGCATACACTGAAAAGTGTA
GTACACATCTCACCACGACAATTGGGGGGGCTGTCGCCATAGTATATAGG
ACGATTACAACACACACAACACTCAAATCAATCACAGATACCTACACATA
CAATCACACAGCAATGATTGCCGGTTCGATGTTTGGCGATGTTTGGTGAA
TCTGTTACAGCATTTTGCGCTCCTAGCGCGGCCCAGGAATCGTAGGCTGG
CAGCCCACTCTTTTCTCACCACGGGTGTTGCTGCATACCTGAGCTATAAC
TTGTCTGGCGGTTATCTATGGGCGCTGTGAAGCTGAAGCATGCGTGTAAT
GGGTGACGTCCCCTTTCTGACAAATGATTGATGCCTTCTAGCTAAAGCTT
GGTGGGCACGGCACCGCACGAGCGCGTGGAACACTCTTACATATATCCCT
TCCAAGTGTCAACAAGTATTTTGTGGCTTCTCTGTTTTACTAAGATAGGG
CGGCGTTTCTTCATTATTCCGGATAGCATTGCAAAATTGGTTTTTCATGG
GGTCGAAGAGTGATATTCGTCAGCACCGATGTGCACAAGCGTTGAGTGGA
TGCGTCATGATGAGTCTCAAAGACGGGTTCGTTTTCTCCTCAATTTTTTT
CTTGAAACGTGGTGTTTTGCCTGAAACCATCAACAGCTCAGCTGCCCCCC
CCCCGGCTATCCCCGTCTCCGGCCCGTGCCCGGGGCATCATGCCACTGCC
ACCCCCCAAATCTCTCTCGGGAACACGCAAGGGCCACCGCGTGCTCATGG
CGATGGTCGACTCCGGGATCCCGCTCCGAGAGTCTACCAAGACGGACGTG
CCCTCCCTGATGCCAGTGCCGACGACGGCTGGTGGCGGTTTCGAGTGGAA
CCAACGCCGGCGACGCAGACGCCCCAGAAGACGACGACGACAGCGGCGAC
ACCAACAACAAGGGGATCCTGGCCTACCGCCCCCGGCCGCCGTGGCCGAG
ATGCAGGAGGCGGTGGTTCGAGAGCGCCTGGGTTTGTTTTCCTCCTGGGA
GGACGGCAGGGGAGGGGGCTCCGCGGTGACCGGCGGCCCGAGAGAGTCGC
GGAACGCCGTCCAGGTTTCCAAGAACTACCTGAGTGGCGTGGAGTTTCCC
AAGGGCGTCGTCAACGGGGAGGGGTGCACCGCGGCTGCGGTGGCGGCGGC
GACGAAAAGCGGGGAGAAGACGCTCGGGATGGGGTGGCTGCTGGCGAACG
ACCTTACTTCGGAGAAGTCAGAGATGGAGCGCGGCGTGCAGGAGGGCGGG
CTGGAGAGAAAGCGGCGGCGCATGAGAGAGTTTTCCTTGAAAAGAAGGGA
ACAGCAGAAGAAACTACAGCGCATCCGTACGACAGGTGCTGGGGATAGAA
GTGGCAGAATCAATGGGGGCTTGCCCGTGGGAAAGGCCGATGATGCCGGG
GTGGGGGTCGCCGCAGGGTTAGACTTGAGGCCGGGAGGTAGGAGAGGCAG
GAACGAGGCGCTGACGTTAAGGATGCGGGTGAGAGGGAAAAGAATGGGGA
TTTTGAGGAGTTTTAGAGGAGCGAATGATAGACCGAGGCGGTAAGATAGA
GTACGAAGTGTTGGTGATGAAGCTCGACCGGAAGTGTTGTAGACGACGGA
GTTCACTGACTGGCGGCTGATTTGGCGGTGCAACGAATGAAGCGGATGTA
CAGCAGAGAGGAATGGTTCCTCGGTGGGGTTGGAGAGTTTTTTGCTAACC
GCAAATCAGCCGCCGTTAGATTCTCAGGGCATTGCCTCTGGTGTGCTAGA
AACTAGGCAACGAGCTGCTGCTTTGTTTGAATTTCTACATAGAGTTGATT
TGCCATTTTTTGGTCGTTCCCATGTTGGTGTGAGGCGATGCGCGCCCCAC
GCCTCTGTTTCGCATAAATATTTAATGTTTGTTTGGAGTCGATCGATTGT
ATTTATCGAAGAAAGCAGCTTGCAACGCATTTGTTGCTTATGTTCTGGCA
AATCAACTTCTACAAGAAAACTCTTTATGACTTCATGCCCCCCCATTGGC
TACTACTGTGGTATGGACAACATGCCGGTGCATCTGCGTAGGCCTACGCT
ATTTGTTCGCCGGCTGACTGCGTCAAACACCGCCCATATCTTCCAAACAT
GGTACCTTCGCCGTTCGTGCCACGGAGACGGTAGTACTGCTTGTTGGCGG
GTAAGGGTTCATCGGATGCGCTTCTGCGTACACTAGGTCACGCGGAGGTA
C
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Coding sequence (CDS) from alignment at Scaffold_553:913337..916537+

>EsuBft904_5a-0001 ID=EsuBft904_5a-0001|Name=EsuBft904_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1176bp|location=Sequence derived from alignment at Scaffold_553:913337..916537+ (Ectocarpus subulatus male Bft15b)
ATGTTGAGCTCGGACTGCTACGCGCCGTTGGTGGAGGCCTACGCGCAGGC
GTCCATGTGGGAGAGGGCGATCGAAGCCTACCAGGAGGGGTTCGTGGTTG
GGCGGGAGGGCGGTGAAGCGGGACCGGTGAAGTATCGGGTGTACGAGTGC
GTGCTGAAGGCGTGCGTCGAGGTTAGCGACGGCCGCACTGCATTAGAGGT
GATCGGCCGTCAGGCTGCGGAGCCGAAAGCGTTGCAGAAGATGTCGTCTA
CGATCACCACCGAGGGGGAGGGTAAGGGGGCGGAGCTCAGCGGCGGCCCC
CCGGATCGCCGGTGCTGGTGCCTGGCCGCGGAGGCGTTGGGGAGAGCGGG
GATGATCAACGAGGGCCACCGCGTGCTCATGGCGATGGTCGACTCCGGGA
TCCCGCTCCGAGAGTCTACCAAGACGGACGTGCCCTCCCTGATGCCAGTG
CCGACGACGGCTGGTGGCGGTTTCGAGTGGAACCAACGCCGGCGACGCAG
ACGCCCCAGAAGACGACGACGACAGCGGCGACACCAACAACAAGGGGATC
CTGGCCTACCGCCCCCGGCCGCCGTGGCCGAGATGCAGGAGGCGGTGGTT
CGAGAGCGCCTGGGTTTGTTTTCCTCCTGGGAGGACGGCAGGGGAGGGGG
CTCCGCGGTGACCGGCGGCCCGAGAGAGTCGCGGAACGCCGTCCAGGTTT
CCAAGAACTACCTGAGTGGCGTGGAGTTTCCCAAGGGCGTCGTCAACGGG
GAGGGGTGCACCGCGGCTGCGGTGGCGGCGGCGACGAAAAGCGGGGAGAA
GACGCTCGGGATGGGGTGGCTGCTGGCGAACGACCTTACTTCGGAGAAGT
CAGAGATGGAGCGCGGCGTGCAGGAGGGCGGGCTGGAGAGAAAGCGGCGG
CGCATGAGAGAGTTTTCCTTGAAAAGAAGGGAACAGCAGAAGAAACTACA
GCGCATCCGTACGACAGGTGCTGGGGATAGAAGTGGCAGAATCAATGGGG
GCTTGCCCGTGGGAAAGGCCGATGATGCCGGGGTGGGGGTCGCCGCAGGG
TTAGACTTGAGGCCGGGAGGTAGGAGAGGCAGGAACGAGGCGCTGACGTT
AAGGATGCGGGTGAGAGGGAAAAGAATGGGGATTTTGAGGAGTTTTAGAG
GAGCGAATGATAGACCGAGGCGGTAA
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