EsuBft903_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft903_8a-0001
Unique NameEsuBft903_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_481contigScaffold_481:299415..302756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft903_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Length195
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft903_8aEsuBft903_8aEctocarpus subulatus male Bft15bgeneScaffold_481 299415..302756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft903_8a-0001EsuBft903_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_481 299415..302756 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft903_8a-0001-exonagat-exon-82335Ectocarpus subulatus male Bft15bexonScaffold_481 299415..299578 -
EsuBft903_8a-0001-exonagat-exon-82333Ectocarpus subulatus male Bft15bexonScaffold_481 300021..300029 -
EsuBft903_8a-0001-exonEsuBft903_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_481 300141..300230 -
EsuBft903_8a-0001-exonagat-exon-82334Ectocarpus subulatus male Bft15bexonScaffold_481 300806..301762 -
EsuBft903_8a-0001-exonagat-exon-82331Ectocarpus subulatus male Bft15bexonScaffold_481 301841..302045 -
EsuBft903_8a-0001-exonagat-exon-82332Ectocarpus subulatus male Bft15bexonScaffold_481 302232..302756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft903_8a-0001-cdsEsuBft903_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_481 299415..299578 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft903_8a-0001 ID=EsuBft903_8a-0001|Name=EsuBft903_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1950bp|location=Sequence derived from alignment at Scaffold_481:299415..302756- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGACGAAGCTGGAAGACGCTGAAATCCGCGCCGAGATTTCACGGGC
AGTGAAGCCGGTGCTACTTGAGCCGCGTCGGTCCGCTAAAGAACTGAAGG
GCGCGCTCAAGATGGCGTGCGGAAAAGTTGCCAGGATACTCTTGGATTCG
GAGAAGCTGCCGCCGCAGGTGTCCCCTTTCTTCCTCAACGACTGCTTCGA
TCAGCCAGAGCGAGGTGCCTCGTACGCCCTCGTGGGCTTTATGTGCCCCG
CACACGAAGACAATGTCGGCTTCTCCGGAGAGAGCGGAAACCGGACGATA
AAGCTCCACCGCCTGATCGAGTCTGCGGTGGCGAGCCAGGGCCACGACCG
GGCTGTATGCGTCAACACGAACGCCGTGCGCTGCCTGAAGAGTGGCGATG
GCAGCCACGCTAACCCTTTCGCTCGCGACGAGAACGTCGACAGCGTGTCC
CAACTTCTTCGCGCCATGTACTTCGCGGGTCTCCACGCGTACGGCGTGAA
GATCACGCGAATCGTCCAGTGCCGCGCGCGGTCGGGCGAGAAGGGACCGC
GGCTTTCCTCCGCCGGGCGTGTAGTGTTCGACTCCGTGCGTGCCGGAACC
ACTGAGGCAGCCTTTCGTGTTTGCCCAGAGGACATCGGTCCCCCCACCCC
CAGCTCCGGGTCTGCTGCGTCGGAGCAGGCCGTCACAAACCTGAGGTCGA
TGCTTGAGGCGAGTCTCTGCGGCAGTCTCGCCGCTGCGAAGAATGCCAAT
GACGCTAGGTTCAGGCACGTGGTCCCCGACCGCGACGGCGTCAAGCATAG
CGGGGTGGCAGGCGGCTTGGCCTCGGGAGTAGCAATAGTGGATACGTGGG
CGCCGGACGTTTGCGACAGCGGTCGTCTGATCGAGCGGGGGCCGGGACCG
CGTGACCAGAGGGTCGCGCATAGCTTGCACATGAATTCCTTCCTGCTCGT
ATGGGCTCATGGTGGAGCGTCTTCCCCGCTGGGAAAAGCGACTCGTCCCA
GCCGGGACGACCTCTTGGGCGACAAGCAAGCCCGCCGGAGGTTGGGCAAG
CCCCCGCTGCTTCTCGATAGGCAGGGGGTAACGGACGGTGGAGGCAAGGA
GCAGACGGGATACCGTATGCCAAGCAAGCGCGTGGAGGCCGTGGGCAGGG
CCGTCTGCAAGGCAACGCTGAAAGCGGCGGTCTCAAAAGGCGGGGTGAGG
GTGATGGTGTCCACGAACGGGGCGGGGGGAGTTGGAACCCCTGATCTGCT
GCTGGAGATGTTTCGTGAGGATAGGTGGGACGACAAGGAGGTTTCTGTCG
ATTGTCGTCGGTTGTTCCTCGGCCGGTACGGCTGCTCCTTCGGCATAGGG
GACACGGTTGGTAGTGCTGCGACCGCGAACATGGTCTACCCGCCAGACCA
CACCGCTGGATCGAGCTTCTTGCTGTACTCCACCGGCGGGCAGGCTTCGT
ACATTGCCTGCGCCGAGATGGGACTTCTCAAGATGGGTCAGGTCGCAGGG
GTCTCGGGGGCGGGGGAAGACGCCATTTTTTTGCATTTCCTCGGGCGCTT
TTGTGGATTGGAGCTTTTCCTCGCTGCCCTCGCCTCTCGCGATGGTCAGA
GTGTCAAGTTCGCCGAGAGACTTCACCGGGCCCTTGTCGCGCACGGAGCA
GTAGGCGTTGTGCGCTGCCTCAAGGGTTCGGCCGGAGCGGACACCGGCTA
CGTCCTCAACGGGGAGCTGGTGCACCGCAACACCCCCGGAGCCCAGCGGA
TGACCAAGGGCGCTGCCGCCCTCAAGGGGCTCAAGGCCACTGCCGACCTG
AGCGCCAAGACGTTGGCGCGTCCGGCGCACCAGCGCACGGTCAAGTCGGG
GAGGGTTCCCCTTTGCGGCAACGTCAACAAGACCGCGGCAGAGCGGGGAA
AGGACAAGTTTACCAACGAGGGCAAGGCCGACGCCGTTGAGGCTGTGTGA
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protein sequence of EsuBft903_8a-0001

>EsuBft903_8 ID=EsuBft903_8|Name=EsuBft903_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=649bp
MRTKLEDAEIRAEISRAVKPVLLEPRRSAKELKGALKMACGKVARILLDS
EKLPPQVSPFFLNDCFDQPERGASYALVGFMCPAHEDNVGFSGESGNRTI
KLHRLIESAVASQGHDRAVCVNTNAVRCLKSGDGSHANPFARDENVDSVS
QLLRAMYFAGLHAYGVKITRIVQCRARSGEKGPRLSSAGRVVFDSVRAGT
TEAAFRVCPEDIGPPTPSSGSAASEQAVTNLRSMLEASLCGSLAAAKNAN
DARFRHVVPDRDGVKHSGVAGGLASGVAIVDTWAPDVCDSGRLIERGPGP
RDQRVAHSLHMNSFLLVWAHGGASSPLGKATRPSRDDLLGDKQARRRLGK
PPLLLDRQGVTDGGGKEQTGYRMPSKRVEAVGRAVCKATLKAAVSKGGVR
VMVSTNGAGGVGTPDLLLEMFREDRWDDKEVSVDCRRLFLGRYGCSFGIG
DTVGSAATANMVYPPDHTAGSSFLLYSTGGQASYIACAEMGLLKMGQVAG
VSGAGEDAIFLHFLGRFCGLELFLAALASRDGQSVKFAERLHRALVAHGA
VGVVRCLKGSAGADTGYVLNGELVHRNTPGAQRMTKGAAALKGLKATADL
SAKTLARPAHQRTVKSGRVPLCGNVNKTAAERGKDKFTNEGKADAVEAV
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mRNA from alignment at Scaffold_481:299415..302756-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft903_8a-0001 ID=EsuBft903_8a-0001|Name=EsuBft903_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3342bp|location=Sequence derived from alignment at Scaffold_481:299415..302756- (Ectocarpus subulatus male Bft15b)
ATGAGGACGAAGCTGGAAGACGCTGAAATCCGCGCCGAGATTTCACGGGC
AGTGAAGCCGGTGCTACTTGAGCCGCGTCGGTCCGCTAAAGAACTGAAGG
GCGCGCTCAAGATGGCGTGCGGAAAAGTTGCCAGGATACTCTTGGATTCG
GAGAAGCTGCCGCCGCAGGTGTCCCCTTTCTTCCTCAACGACTGCTTCGA
TCAGCCAGAGCGAGGTGCCTCGTACGCCCTCGTGGGCTTTATGTGCCCCG
CACACGAAGACAATGTCGGCTTCTCCGGAGAGAGCGGAAACCGGACGATA
AAGCTCCACCGCCTGATCGAGTCTGCGGTGGCGAGCCAGGGCCACGACCG
GGCTGTATGCGTCAACACGAACGCCGTGCGCTGCCTGAAGAGTGGCGATG
GCAGCCACGCTAACCCTTTCGCTCGCGACGAGAACGTCGACAGCGTGTCC
CAACTTCTTCGCGCCATGTACTTCGCGGGTCTCCACGCGTACGGCGTGAA
GATCACGCGAATCGTCCAGTGCCGCGTGAGCGAGGAGCCGGAGAGAGGGC
CGTTCCACCTGGGACTCTGATCTGGGCTTGTTCCGGCGGCGGGGCTCCTG
CTCTCTTCGTCCAACACCCCGTTCGTCGCCGCTCCTCACCTGACGGCGAC
CAAGGTCAGCCGAAGCTACCACGAGGGACTCGCGGCGAGGGTTGCCGCGC
AGATCGTTCAGGCGCGGTCGGGCGAGAAGGGACCGCGGCTTTCCTCCGCC
GGGCGTGTAGTGTTCGACTCCGTGCGTGCCGGAACCACTGAGGCAGCCTT
TCGTGTTTGCCCAGAGGACATCGGTCCCCCCACCCCCAGCTCCGGGTCTG
CTGCGTCGGAGCAGGCCGTCACAAACCTGAGGTCGATGCTTGAGGCGAGT
CTCTGCGGCAGTCTCGGTTCGTGAGATGTGGCGGCATCGGCTGTGTCTCG
TATCTTCGCCCCACCGAGCGAGGGCGAGGCGAAGGAGTCGGCAGCCGCTG
CGAAGAATGCCAATGACGCTAGGTTCAGGCACGTGGTCCCCGACCGCGAC
GGCGTCAAGCATAGCGGGGTGGCAGGCGGCTTGGCCTCGGGAGTAGCAAT
AGTGGATACGTGGGCGCCGGACGTTTGCGACAGCGGTCGTCTGATCGAGC
GGGGGCCGGGACCGCGTGACCAGAGGGTCGCGCATAGCTTGCACATGAAT
TCCTTCCTGCTCGTATGGGCTCATGGTGGAGCGTCTTCCCCGCTGGGAAA
AGCGACTCGTCCCAGCCGGGACGACCTCTTGGGCGACAAGCAAGCCCGCC
GGAGGTTGGGCAAGCCCCCGCTGCTTCTCGATAGGCAGGGGGTAACGGAC
GGTGGAGGCAAGGAGCAGACGGGATACCGTATGCCAAGCAAGCGCGTGGA
GGCCGTGGGCAGGGCCGTCTGCAAGGCAACGCTGAAAGCGGCGGTCTCAA
AAGGCGGGGTGAGGGTGATGGTGTCCACGAACGGGGCGGGGGGAGTTGGA
ACCCCTGATCTGCTGCTGGAGATGTTTCGTGAGGATAGGTGGGACGACAA
GGAGGTTTCTGTCGATTGTCGTCGGTTGTTCCTCGGCCGGTACGGCTGCT
CCTTCGGCATAGGGGACACGGTTGGTAGTGCTGCGACCGCGAACATGGTC
TACCCGCCAGACCACACCGCTGGATCGAGCTTCTTGCTGTACTCCACCGG
CGGGCAGGCTTCGTACATTGCCTGCGCCGAGATGGGACTTCTCAAGATGG
GTCAGGTCGCAGGGGTCTCGGGGGCGGGGGAAGACGCCATTTTTTTGCAT
TTCCTCGGGCGCTTTTGTGGATTGGAGCTTTTCCTCGCTGCCCTCGCCTC
TCGCGATGGTCAGAGTGTCAAGTTCGCCGAGAGACTTCACCGGGCCCTTG
TCGCGCACGGAGCAGTAGGCGTTGTGCGCTGCCTCAAGGGTTCGGCCGGA
GGTAGGGTCCCCTGCAATAGGATTGAATTGTGCTGGCGCCAAATCGATTG
CTATCCCGCCCACGTGGCCTCCACAGCCCCGCCCCCCGCCCTGTGCCCCA
ACGTTAAAAGTTGGCAGCGAGTGCTCCCGCGGGAGAATCAAGTAGGTGCC
GGTGCGGAGGATTGTTGTTGTCGCTGTATTCGTGTAGGTCCTAACTACAG
TCTGGATCGCTTTGGATCACATTTGGCGCCAAATCGATTGCAGTCTCGCC
CACGTGGCCTCCACAGCCCCGCCCCCCCTTTTGCCCCAACGTTTAAAAGT
TGGCAGAGATCGCTCGCGAATTGCTTTGCCGGCGGGCTCAAGTCGAGTGC
CCAACCGCAGTCGATTATCATCTTGTTTTTGCTCCCGTTGTCGGTGGTTG
GTGGTTGTCGCTGCTGCTGCCGCGGCTGCTGCTGCGGCTGCTGCTGCTGT
CTGCTTGGCAGGTGTCAGGCTGAGCGATTTGCCTCGAGAGCGTGCCGAGT
AGACGCATTATGCCTCAACCCCCCTCGCCGCCCGCTCGTCCAACGCGTCC
ACCAACACCACGTCCACCCGACACAGCGGACACCGGCTACGTCCTCAACG
GGGAGCTGGTGCACCGCAACACCCCCGGAGCCCAGCGGATGACCAAGGGC
GCTGCCGCCCTCAAGGGTAAGAAACCGGGTGTCTGTTGTTGTCGTTCGCA
TGCTGTTACTCTCGTTGTCGGTGTGCTAGCGTCTAAGGATATCCCGGGGG
CCACGTACATCACCGAGGGAGGTGCAGGGCTCAAGGGTGAGTGAGAGAGA
ACCTCCGGTTGTCGTTGTTGCCGTTCGTAGTGGTGCTGCCTTTGGTGGCC
TTGAAATCATCGCCGATCATCGATCTCGGATGGCTCCCTGCATTGTGCTG
GCGCCAAATCGATTGCAGTCTCGCCCACGTGGCCTCGACAGCCCTGCCCC
CCCCCCTGTGCCCCAACGTTTAAAAGTTGGCAGAGATCGCTCGCGTCAGA
GAATCAAGTAGGTGCCGCTGGGGGATTTACTTTCTTCTGCCCGCGAGAGA
TCAGTACCAACATTAACTGCCTTACCGCATCAAGAGGACAAGCCTGTAAT
GATTACCTCTACTCAACGTCTCCAACGGTAGCAGCGCACACACACCCGCC
CCCCGGCAAAAAACTAATCCGCACGCCCCGGGACACTAACCTCTCTCCAC
CCTAATGTGCCCACCCTTGCCCCGCCAGCCACTGCCGACCTGAGCGCCAA
GACGTTGGCGCGTCCGGCGCACCAGCGCACGGTCAAGTCGGGGAGGGTTC
CCCTTTGCGGCAACGTCAACAAGACCGCGGCAGAGCGGGGAAAGGACAAG
TTTACCAACGAGGGCAAGGCCGACGCCGTTGAGGCTGTGTGA
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Coding sequence (CDS) from alignment at Scaffold_481:299415..302756-

>EsuBft903_8a-0001 ID=EsuBft903_8a-0001|Name=EsuBft903_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1950bp|location=Sequence derived from alignment at Scaffold_481:299415..302756- (Ectocarpus subulatus male Bft15b)
ATGAGGACGAAGCTGGAAGACGCTGAAATCCGCGCCGAGATTTCACGGGC
AGTGAAGCCGGTGCTACTTGAGCCGCGTCGGTCCGCTAAAGAACTGAAGG
GCGCGCTCAAGATGGCGTGCGGAAAAGTTGCCAGGATACTCTTGGATTCG
GAGAAGCTGCCGCCGCAGGTGTCCCCTTTCTTCCTCAACGACTGCTTCGA
TCAGCCAGAGCGAGGTGCCTCGTACGCCCTCGTGGGCTTTATGTGCCCCG
CACACGAAGACAATGTCGGCTTCTCCGGAGAGAGCGGAAACCGGACGATA
AAGCTCCACCGCCTGATCGAGTCTGCGGTGGCGAGCCAGGGCCACGACCG
GGCTGTATGCGTCAACACGAACGCCGTGCGCTGCCTGAAGAGTGGCGATG
GCAGCCACGCTAACCCTTTCGCTCGCGACGAGAACGTCGACAGCGTGTCC
CAACTTCTTCGCGCCATGTACTTCGCGGGTCTCCACGCGTACGGCGTGAA
GATCACGCGAATCGTCCAGTGCCGCGCGCGGTCGGGCGAGAAGGGACCGC
GGCTTTCCTCCGCCGGGCGTGTAGTGTTCGACTCCGTGCGTGCCGGAACC
ACTGAGGCAGCCTTTCGTGTTTGCCCAGAGGACATCGGTCCCCCCACCCC
CAGCTCCGGGTCTGCTGCGTCGGAGCAGGCCGTCACAAACCTGAGGTCGA
TGCTTGAGGCGAGTCTCTGCGGCAGTCTCGCCGCTGCGAAGAATGCCAAT
GACGCTAGGTTCAGGCACGTGGTCCCCGACCGCGACGGCGTCAAGCATAG
CGGGGTGGCAGGCGGCTTGGCCTCGGGAGTAGCAATAGTGGATACGTGGG
CGCCGGACGTTTGCGACAGCGGTCGTCTGATCGAGCGGGGGCCGGGACCG
CGTGACCAGAGGGTCGCGCATAGCTTGCACATGAATTCCTTCCTGCTCGT
ATGGGCTCATGGTGGAGCGTCTTCCCCGCTGGGAAAAGCGACTCGTCCCA
GCCGGGACGACCTCTTGGGCGACAAGCAAGCCCGCCGGAGGTTGGGCAAG
CCCCCGCTGCTTCTCGATAGGCAGGGGGTAACGGACGGTGGAGGCAAGGA
GCAGACGGGATACCGTATGCCAAGCAAGCGCGTGGAGGCCGTGGGCAGGG
CCGTCTGCAAGGCAACGCTGAAAGCGGCGGTCTCAAAAGGCGGGGTGAGG
GTGATGGTGTCCACGAACGGGGCGGGGGGAGTTGGAACCCCTGATCTGCT
GCTGGAGATGTTTCGTGAGGATAGGTGGGACGACAAGGAGGTTTCTGTCG
ATTGTCGTCGGTTGTTCCTCGGCCGGTACGGCTGCTCCTTCGGCATAGGG
GACACGGTTGGTAGTGCTGCGACCGCGAACATGGTCTACCCGCCAGACCA
CACCGCTGGATCGAGCTTCTTGCTGTACTCCACCGGCGGGCAGGCTTCGT
ACATTGCCTGCGCCGAGATGGGACTTCTCAAGATGGGTCAGGTCGCAGGG
GTCTCGGGGGCGGGGGAAGACGCCATTTTTTTGCATTTCCTCGGGCGCTT
TTGTGGATTGGAGCTTTTCCTCGCTGCCCTCGCCTCTCGCGATGGTCAGA
GTGTCAAGTTCGCCGAGAGACTTCACCGGGCCCTTGTCGCGCACGGAGCA
GTAGGCGTTGTGCGCTGCCTCAAGGGTTCGGCCGGAGCGGACACCGGCTA
CGTCCTCAACGGGGAGCTGGTGCACCGCAACACCCCCGGAGCCCAGCGGA
TGACCAAGGGCGCTGCCGCCCTCAAGGGGCTCAAGGCCACTGCCGACCTG
AGCGCCAAGACGTTGGCGCGTCCGGCGCACCAGCGCACGGTCAAGTCGGG
GAGGGTTCCCCTTTGCGGCAACGTCAACAAGACCGCGGCAGAGCGGGGAA
AGGACAAGTTTACCAACGAGGGCAAGGCCGACGCCGTTGAGGCTGTGTGA
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