EsuBft903_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft903_7a-0001
Unique Name	EsuBft903_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_481	contig	Scaffold_481:291912..294202 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LIH3
ProteomeId	EsuBft903_7
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	PTHR24015
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	IPR002885
Protein domains	IPR011990
Owner	apollo_admin@sb-roscoff.fr
Note	pentatricopeptide repeat-containing protein at1g62910 os:arabidopsis thaliana gn:at1g62910 pe:2 [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	2236
Hectar predicted targeting category	chloroplast
Evalue	1.44e-74
EggNOG OGs	KOG4197@1\|root,KOG4197@2759\|Eukaryota
Ec32 ortholog description	Tetratricopeptide-like helical domain
Ec32 ortholog	Ec-18_003670.1
Date last modified	2016-06-13
Date creation	2016-06-13
Description	endonuclease activity
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0031227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft903_7a	EsuBft903_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_481 291912..294202 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_7a-0001-exon	agat-exon-82330	Ectocarpus subulatus male Bft15b	exon	Scaffold_481 291912..291975 +
EsuBft903_7a-0001-exon	EsuBft903_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_481 292031..294202 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_7a-0001-cds	EsuBft903_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_481 291912..291975 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_7a-0001-exon	agat-three_prime_utr-22920	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_481 294115..294202 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_7a-0001	EsuBft903_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_481 291912..294114 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_481:291912..294202+
coding sequence from alignment at Scaffold_481:291912..294202+

spliced messenger RNA

>EsuBft903_7a-0001 ID=EsuBft903_7a-0001|Name=EsuBft903_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2236bp|location=Sequence derived from alignment at Scaffold_481:291912..294202+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGTGCTGGTTCTGCACATCCAGCTATTTCCCCTCCACCACACGGG
CTTAGCCTTCACCGGTGTCACGCACCGCCACAGCCTGCAAGACACAGCCC
CCCGCCAGGCCGCCACGTGCAGTGCTTCGGGAGGCCTCTGCGGAGCCCCC
CGAACACGCCGGGGTCGCCCCCGGCGACTGCGGGCAGCCAGGATACCCTT
CGCTCTCGAAGCGCATGCTCCCGACGGCGATGCTGCCAACGACACGGAGC
TTGAGAGTGGGCCGAGAAAAAGACAGCAACTGGGCGCCCGGCCTTACCGG
GACTCAGGGGTTAGGGCTGGGGACGCAGACTCAAGTACCCCCCCGCGACA
GCAACGAAAATCCAAAACGGACAAGGGCGGCCGGCAGGCAAGCATGTCTA
TGTCCCAGTTGAAGGCGACATTGCGCGAAGCGAAGCAGGACGGGGACTGG
AGGAAGGCACTAGATGTTCTGGACAGGATGCAGGAGCAGGGGGTGAAGCC
AGACTCCCAGAATTACAGCTCAGCCATCGCCGCCTGTGGCAACGCGAGGC
AATGGGAAAGGGCGCTTGAGCTGCTGGCATCGATGGCGGCACGAGGAACT
CCGCCCGACGTTGTCACCTACAGCTCGGCAATTGCTGCTTGTGCAAAGGT
GAGTCGGTGGAAGGAAGCTGTGGGCTTGCTGAGATCAATGAAAGGGCAAG
GAGTAAAACCCAACGTCATCGCCTACAGTTCAGCTATCTCGGCGTGCAGA
AAGGGTGGGCAGTGGGAGACTGCCGTGGATCTGCTACAAGAGATGCCAGC
GGTCGGCCTAGCCCCAGACGTGATCACTTACAGCACGGTGATCGATGCTT
GCGCCAAGAGGGGACAGTGGGAACCTGCGTTCCGCCTGCTGATGGAGATG
CCGACGAAGGGGATGGTCGCCAATATCATCACCTACAGCATCGTGATCGG
TGCTTGCGCGAAGTGGGGTAAGTGGGAAGAGGCTGTAGCTTTACTGCGGG
AAATGCAGGAGCACGGCGTAGCCCCCGATGTCATCACCTATAGTTCAACC
ATCAGCGCGTGCGCCAAGAAGGGGCAGTGGGAAGAGGCCGTGGGCCTGCT
GAGAGAGATGCCGATGGAGGGGGTAACCCCCAATGCTATCAGCTACGGTA
TTGTGATCTCCGCTTGTGCAAAGGGGGGGCGGTGGAGGGAGGCCATCGAC
TTACTGCAGGAGATGCAGGCGCATGGAGTGCCCCCGGATGTCATAAACTA
CAGCGCGGCCATTGACGCTTGCGCACAAGCGAGTCAGTGGGAACAGGCGT
TGTGGCTTCTACGAGAGATGCCAGCAACGGGGCTTATACCCAACGTCATC
AGCTACAACTCTGCCATCGATGCTTGTGCGAAAACTGGTCGATCGAAGAT
TGCCGTTGATCTGCTGAGGGAGATGCCGGCGCATGGGTTGGCCCCCGATG
TGATCACCTACAGCGCGGTCATTGCGTCATGTGCTATGGGAAGGCAGTGG
GAGGAGGCTCTTGGTTTTTTTAGAGAGATGCAGGGGCAGGGAATAACCCC
AGACGTGGTCAGCTGCAACACAGCCATCAACGCTTGCGCGCAAGGGGGTC
GGTGGGAGGAGGCTTTAGATGTACTAGGAGAGATGCCGAGCATGGGGCTT
ACCCCCGACGCCATCAGCTACCGGACAGCCATCGATGCGTGTGCGAAAGG
GGGTCGATGGAATGCGATGATTGATCTTCTAAGAAAGATGCCGGCGGTAG
GGCTTACCCCAGATGCCATCAACTACAGGTTCGCCATGAGTGCATGCTCA
GCGGACGGACTGTGGGAGGAAGCTCTCGTTTTGCTGAGAGACATGCTGGC
GGTTGGGCTTTCCCCCGATGTCGTCACTTACAACTCGGCCATCAACGCTT
GTGCAATGGACGGACGATGGAAGGAGGCAACGGTGCTGCTGAGAAAGATG
CCGACATTTGGACTTGCTCCCGACGTTAACAGCTTCAACGCAGCAATCGA
CGCTTGCGGAAACGGGGACCAATGGGGAACGGCAGTTGACGTGCTCTTTG
AAATGCGGGCGCTAGGAGTTTTCCCAAACGAGGTGACGTACCTCACTGCG
ATGTACGCATGTGAGAGATGCGGCGAGAAAGACGATTGGATGTCCTGAAA
CCACATACTGGCTTAGCAGCGGGTTCGTACGCGACCGTAGAGTACGGCGT
TTTTTGTTGCTGTTCCGTCTTGGACGCATCATGTGT

protein sequence of EsuBft903_7a-0001

>EsuBft903_7 ID=EsuBft903_7|Name=EsuBft903_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=715bp
MFVLVLHIQLFPLHHTGLAFTGVTHRHSLQDTAPRQAATCSASGGLCGAP
RTRRGRPRRLRAARIPFALEAHAPDGDAANDTELESGPRKRQQLGARPYR
DSGVRAGDADSSTPPRQQRKSKTDKGGRQASMSMSQLKATLREAKQDGDW
RKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERALELLASMAARGT
PPDVVTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIAYSSAISACR
KGGQWETAVDLLQEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEM
PTKGMVANIITYSIVIGACAKWGKWEEAVALLREMQEHGVAPDVITYSST
ISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKGGRWREAID
LLQEMQAHGVPPDVINYSAAIDACAQASQWEQALWLLREMPATGLIPNVI
SYNSAIDACAKTGRSKIAVDLLREMPAHGLAPDVITYSAVIASCAMGRQW
EEALGFFREMQGQGITPDVVSCNTAINACAQGGRWEEALDVLGEMPSMGL
TPDAISYRTAIDACAKGGRWNAMIDLLRKMPAVGLTPDAINYRFAMSACS
ADGLWEEALVLLRDMLAVGLSPDVVTYNSAINACAMDGRWKEATVLLRKM
PTFGLAPDVNSFNAAIDACGNGDQWGTAVDVLFEMRALGVFPNEVTYLTA
MYACERCGEKDDWMS

mRNA from alignment at Scaffold_481:291912..294202+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft903_7a-0001 ID=EsuBft903_7a-0001|Name=EsuBft903_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2291bp|location=Sequence derived from alignment at Scaffold_481:291912..294202+ (Ectocarpus subulatus male Bft15b)
ATGTTCGTGCTGGTTCTGCACATCCAGCTATTTCCCCTCCACCACACGGG
CTTAGCCTTCACCGGTCATGCACAAAAACATTGACCCAATCCCCCCCCCC
CCCCCCCCAGCAGATGTAGGTGTCACGCACCGCCACAGCCTGCAAGACAC
AGCCCCCCGCCAGGCCGCCACGTGCAGTGCTTCGGGAGGCCTCTGCGGAG
CCCCCCGAACACGCCGGGGTCGCCCCCGGCGACTGCGGGCAGCCAGGATA
CCCTTCGCTCTCGAAGCGCATGCTCCCGACGGCGATGCTGCCAACGACAC
GGAGCTTGAGAGTGGGCCGAGAAAAAGACAGCAACTGGGCGCCCGGCCTT
ACCGGGACTCAGGGGTTAGGGCTGGGGACGCAGACTCAAGTACCCCCCCG
CGACAGCAACGAAAATCCAAAACGGACAAGGGCGGCCGGCAGGCAAGCAT
GTCTATGTCCCAGTTGAAGGCGACATTGCGCGAAGCGAAGCAGGACGGGG
ACTGGAGGAAGGCACTAGATGTTCTGGACAGGATGCAGGAGCAGGGGGTG
AAGCCAGACTCCCAGAATTACAGCTCAGCCATCGCCGCCTGTGGCAACGC
GAGGCAATGGGAAAGGGCGCTTGAGCTGCTGGCATCGATGGCGGCACGAG
GAACTCCGCCCGACGTTGTCACCTACAGCTCGGCAATTGCTGCTTGTGCA
AAGGTGAGTCGGTGGAAGGAAGCTGTGGGCTTGCTGAGATCAATGAAAGG
GCAAGGAGTAAAACCCAACGTCATCGCCTACAGTTCAGCTATCTCGGCGT
GCAGAAAGGGTGGGCAGTGGGAGACTGCCGTGGATCTGCTACAAGAGATG
CCAGCGGTCGGCCTAGCCCCAGACGTGATCACTTACAGCACGGTGATCGA
TGCTTGCGCCAAGAGGGGACAGTGGGAACCTGCGTTCCGCCTGCTGATGG
AGATGCCGACGAAGGGGATGGTCGCCAATATCATCACCTACAGCATCGTG
ATCGGTGCTTGCGCGAAGTGGGGTAAGTGGGAAGAGGCTGTAGCTTTACT
GCGGGAAATGCAGGAGCACGGCGTAGCCCCCGATGTCATCACCTATAGTT
CAACCATCAGCGCGTGCGCCAAGAAGGGGCAGTGGGAAGAGGCCGTGGGC
CTGCTGAGAGAGATGCCGATGGAGGGGGTAACCCCCAATGCTATCAGCTA
CGGTATTGTGATCTCCGCTTGTGCAAAGGGGGGGCGGTGGAGGGAGGCCA
TCGACTTACTGCAGGAGATGCAGGCGCATGGAGTGCCCCCGGATGTCATA
AACTACAGCGCGGCCATTGACGCTTGCGCACAAGCGAGTCAGTGGGAACA
GGCGTTGTGGCTTCTACGAGAGATGCCAGCAACGGGGCTTATACCCAACG
TCATCAGCTACAACTCTGCCATCGATGCTTGTGCGAAAACTGGTCGATCG
AAGATTGCCGTTGATCTGCTGAGGGAGATGCCGGCGCATGGGTTGGCCCC
CGATGTGATCACCTACAGCGCGGTCATTGCGTCATGTGCTATGGGAAGGC
AGTGGGAGGAGGCTCTTGGTTTTTTTAGAGAGATGCAGGGGCAGGGAATA
ACCCCAGACGTGGTCAGCTGCAACACAGCCATCAACGCTTGCGCGCAAGG
GGGTCGGTGGGAGGAGGCTTTAGATGTACTAGGAGAGATGCCGAGCATGG
GGCTTACCCCCGACGCCATCAGCTACCGGACAGCCATCGATGCGTGTGCG
AAAGGGGGTCGATGGAATGCGATGATTGATCTTCTAAGAAAGATGCCGGC
GGTAGGGCTTACCCCAGATGCCATCAACTACAGGTTCGCCATGAGTGCAT
GCTCAGCGGACGGACTGTGGGAGGAAGCTCTCGTTTTGCTGAGAGACATG
CTGGCGGTTGGGCTTTCCCCCGATGTCGTCACTTACAACTCGGCCATCAA
CGCTTGTGCAATGGACGGACGATGGAAGGAGGCAACGGTGCTGCTGAGAA
AGATGCCGACATTTGGACTTGCTCCCGACGTTAACAGCTTCAACGCAGCA
ATCGACGCTTGCGGAAACGGGGACCAATGGGGAACGGCAGTTGACGTGCT
CTTTGAAATGCGGGCGCTAGGAGTTTTCCCAAACGAGGTGACGTACCTCA
CTGCGATGTACGCATGTGAGAGATGCGGCGAGAAAGACGATTGGATGTCC
TGAAACCACATACTGGCTTAGCAGCGGGTTCGTACGCGACCGTAGAGTAC
GGCGTTTTTTGTTGCTGTTCCGTCTTGGACGCATCATGTGT

Coding sequence (CDS) from alignment at Scaffold_481:291912..294202+

>EsuBft903_7a-0001 ID=EsuBft903_7a-0001|Name=EsuBft903_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2148bp|location=Sequence derived from alignment at Scaffold_481:291912..294202+ (Ectocarpus subulatus male Bft15b)
ATGTTCGTGCTGGTTCTGCACATCCAGCTATTTCCCCTCCACCACACGGG
CTTAGCCTTCACCGGTGTCACGCACCGCCACAGCCTGCAAGACACAGCCC
CCCGCCAGGCCGCCACGTGCAGTGCTTCGGGAGGCCTCTGCGGAGCCCCC
CGAACACGCCGGGGTCGCCCCCGGCGACTGCGGGCAGCCAGGATACCCTT
CGCTCTCGAAGCGCATGCTCCCGACGGCGATGCTGCCAACGACACGGAGC
TTGAGAGTGGGCCGAGAAAAAGACAGCAACTGGGCGCCCGGCCTTACCGG
GACTCAGGGGTTAGGGCTGGGGACGCAGACTCAAGTACCCCCCCGCGACA
GCAACGAAAATCCAAAACGGACAAGGGCGGCCGGCAGGCAAGCATGTCTA
TGTCCCAGTTGAAGGCGACATTGCGCGAAGCGAAGCAGGACGGGGACTGG
AGGAAGGCACTAGATGTTCTGGACAGGATGCAGGAGCAGGGGGTGAAGCC
AGACTCCCAGAATTACAGCTCAGCCATCGCCGCCTGTGGCAACGCGAGGC
AATGGGAAAGGGCGCTTGAGCTGCTGGCATCGATGGCGGCACGAGGAACT
CCGCCCGACGTTGTCACCTACAGCTCGGCAATTGCTGCTTGTGCAAAGGT
GAGTCGGTGGAAGGAAGCTGTGGGCTTGCTGAGATCAATGAAAGGGCAAG
GAGTAAAACCCAACGTCATCGCCTACAGTTCAGCTATCTCGGCGTGCAGA
AAGGGTGGGCAGTGGGAGACTGCCGTGGATCTGCTACAAGAGATGCCAGC
GGTCGGCCTAGCCCCAGACGTGATCACTTACAGCACGGTGATCGATGCTT
GCGCCAAGAGGGGACAGTGGGAACCTGCGTTCCGCCTGCTGATGGAGATG
CCGACGAAGGGGATGGTCGCCAATATCATCACCTACAGCATCGTGATCGG
TGCTTGCGCGAAGTGGGGTAAGTGGGAAGAGGCTGTAGCTTTACTGCGGG
AAATGCAGGAGCACGGCGTAGCCCCCGATGTCATCACCTATAGTTCAACC
ATCAGCGCGTGCGCCAAGAAGGGGCAGTGGGAAGAGGCCGTGGGCCTGCT
GAGAGAGATGCCGATGGAGGGGGTAACCCCCAATGCTATCAGCTACGGTA
TTGTGATCTCCGCTTGTGCAAAGGGGGGGCGGTGGAGGGAGGCCATCGAC
TTACTGCAGGAGATGCAGGCGCATGGAGTGCCCCCGGATGTCATAAACTA
CAGCGCGGCCATTGACGCTTGCGCACAAGCGAGTCAGTGGGAACAGGCGT
TGTGGCTTCTACGAGAGATGCCAGCAACGGGGCTTATACCCAACGTCATC
AGCTACAACTCTGCCATCGATGCTTGTGCGAAAACTGGTCGATCGAAGAT
TGCCGTTGATCTGCTGAGGGAGATGCCGGCGCATGGGTTGGCCCCCGATG
TGATCACCTACAGCGCGGTCATTGCGTCATGTGCTATGGGAAGGCAGTGG
GAGGAGGCTCTTGGTTTTTTTAGAGAGATGCAGGGGCAGGGAATAACCCC
AGACGTGGTCAGCTGCAACACAGCCATCAACGCTTGCGCGCAAGGGGGTC
GGTGGGAGGAGGCTTTAGATGTACTAGGAGAGATGCCGAGCATGGGGCTT
ACCCCCGACGCCATCAGCTACCGGACAGCCATCGATGCGTGTGCGAAAGG
GGGTCGATGGAATGCGATGATTGATCTTCTAAGAAAGATGCCGGCGGTAG
GGCTTACCCCAGATGCCATCAACTACAGGTTCGCCATGAGTGCATGCTCA
GCGGACGGACTGTGGGAGGAAGCTCTCGTTTTGCTGAGAGACATGCTGGC
GGTTGGGCTTTCCCCCGATGTCGTCACTTACAACTCGGCCATCAACGCTT
GTGCAATGGACGGACGATGGAAGGAGGCAACGGTGCTGCTGAGAAAGATG
CCGACATTTGGACTTGCTCCCGACGTTAACAGCTTCAACGCAGCAATCGA
CGCTTGCGGAAACGGGGACCAATGGGGAACGGCAGTTGACGTGCTCTTTG
AAATGCGGGCGCTAGGAGTTTTCCCAAACGAGGTGACGTACCTCACTGCG
ATGTACGCATGTGAGAGATGCGGCGAGAAAGACGATTGGATGTCCTGA