EsuBft903_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft903_4a-0001
Unique Name	EsuBft903_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_481	contig	Scaffold_481:247194..249741 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	164328.Phyra85518
ProteomeId	EsuBft903_4
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	3
Max annot lvl	4776\|Peronosporales
Length	2331
Hectar predicted targeting category	other localisation
Evalue	5.81e-61
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QH4V@4776\|Peronosporales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	GAG-pre-integrase domain
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0005515
EC	3.1
GO	0003824
GO	0097159
GO	1901363
GO	0004518
GO	0090304
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft903_4a	EsuBft903_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_481 247194..249741 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_4a-0001-exon	agat-exon-82309	Ectocarpus subulatus male Bft15b	exon	Scaffold_481 247194..247530 +
EsuBft903_4a-0001-exon	agat-exon-82310	Ectocarpus subulatus male Bft15b	exon	Scaffold_481 247635..249238 +
EsuBft903_4a-0001-exon	EsuBft903_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_481 249352..249741 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_4a-0001-cds	EsuBft903_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_481 247194..247530 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_4a-0001	EsuBft903_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_481 247194..249741 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_481:247194..249741+
coding sequence from alignment at Scaffold_481:247194..249741+

spliced messenger RNA

>EsuBft903_4a-0001 ID=EsuBft903_4a-0001|Name=EsuBft903_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2331bp|location=Sequence derived from alignment at Scaffold_481:247194..249741+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCGCCTGCGGCACCCGGAAATGGTATGCAGGGGGACGAACACGG
AGGTCCCCCGTCGCCTTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCCGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACCCCGAAACTTCTTTGAT
GAGCGTCGAGCGCCGGCCTGCTGCGCCATGTGCTCCAGCCCGGCCGCACG
CGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGAGCCGAGCGAGGC
GCCAGCCCCCGAGGAGGCGCTGTTATCAACCGTCCTGGAGACCGAAAACG
GTCCGGAGATCGTTGCGGAATATATACGCGAATCGCTGTTGGAGGGCAAG
ACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCAGTTACAATACGATCTA
GTGAAGGGGCTCCATCCTGATGGAGGGGAGCTGGAGCTGGCATTCAGTGC
AAACGAAAAGGACGACGGGTCCCCGCAACCACTCCTTGACCCGGAGCTAA
GTATTCCCTCGCCGATCGGGCAGAAGCCTAACGATGTAGAGGCTGTCCCG
CTTACGTACAAAGATGCGATGGATTCCAAGTACAAAGTGTTTTGGGAAGC
GGCGATGATGAAAGAGAGGGGTGGTCCAGACAAGGCGGGGACTTTCACGA
AAATTGGCAAACTTTCCGAGGGGCGGAAGGCGGTGACTTCGAAGTGGGTG
TTTTCGTACAAGACGAACGAGAAGGAAGTGATCACCGCCTTCAAAGCCCG
TATCGTTGCGCGTGGTTTCTCACAGATTCCGGGGGTAGATTTCCACGACT
CAGCTTCTGCATGCCCGTCTACGACGTCCATCAAAACCGTGGTTGTCGTA
GCCACCGAGAAGAAAAAGAAGATGTTCCACTGGGAAATTAAACAAGTGTA
CATTCACGCTAAGCTCAAAGAAGAGATTTTTACCAGGCTTCCCCAGGGTT
GTGGTGACATGCTTGGCAAGGTGTGCAAGGTTGAGCGTGCACTGTATGGC
CTGAAACAAAGCGGTCGCGAGTGGGGGTTTGAAGCTGCTGATACCCTCAT
CGCGAATGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTTTTCCGTAGGA
TGGTTGACGGAGAGGTCGTAGGTCTGATCTACGTAGACGACATTTTGTTG
GTGGCGTCCGAGCAAGAGTGTCAAGAGTTGCTTGCTTCCCTCCAGAAGAA
GTTTCCGGTGAAGGATTTGGGAGAATGCACGTGGTATGATGGCATTGAGA
TGGGCCTAGAGAACGGCATCACCAAGTTGTCCCAGACGGCATACATCGAG
AGCATCATCAAGCGGTTTAACGTGACTACTACCGCCCCCACGCCTGCTGT
CCCCGGCGCCGACCTAGGGCCGAAACGAGATGACGAGCCCACGGTGGACA
AGCCAGTAAGGGAGGCACTCGGGTGCCTGATGTGGGTGGTGCATACGAGG
CCGGACATCGCTCTGCCGTTGAACAAGATCCAGAAGGTGGCTCACTCTCC
CACCGACACGATATTGNTCAAGCGGTTTAACGTGACTACTACCGCCCCCA
CGCCTGCTGTCCCCGGCGCCGACCTAGGGCCGAAACGAGATGACGAGCCC
ACGGTGGACAAGCCAGTAAGGGAGGCACTCGGGTGCCTGATGTGGGTGGT
GCATACGAGGCCGGACATCGCTCTGCCGTTGAACAAGATCCAGAAGGTGG
CTTACTCTCCCACCGACAGGATATGGCAGGCGCTTCTGAGGGCGTTCGAC
AACGGNAACGGAACCACAAAAACGCAGCGTGTGCCGGCGCAGTCATCCTC
GGAGGAAGAGTATCTAGCAGTCGGGGAGGGAGTGAAGGAGGCGTTGCATG
TGCGTGCGGTTCTGTCTTTCGTAGCGCCTGAGACGAGTGGGACGATCAAG
GTCCTTGAAGACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCTTCAG
CTCGGCGAGGAGCAAGCACATCGACGTGCGGTACCACTTTATCCGCGAGC
TCTTCAAGTCGGGCAAGATCACCGCAGAGTATGTCCCGACGAAAGAGCAG
CACGCCGACATACTGACCAAGGTCCTTGGTAGGACCAAACCGGAGTACCA
CCGGAAGGCTCTGATGAACCTCCCGGAGTAG

protein sequence of EsuBft903_4a-0001

>EsuBft903_4 ID=EsuBft903_4|Name=EsuBft903_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=776bp
MGAPAAPGNGMQGDEHGGPPSPSSGGGDFGGGDDPADNSSNSNDSSGPSD
VSNNHDGGGSEPLSGDSGDESSGGSEPVSSTSSHDGSNDDGDGSEAVDPG
SDDDGGGETGDPETSLMSVERRPAAPCAPARPHAEADPGVAELRGRAERG
ASPRGGAVINRPGDRKRSGDRCGIYTRIAVGGQDEQAHREELKKQLQYDL
VKGLHPDGGELELAFSANEKDDGSPQPLLDPELSIPSPIGQKPNDVEAVP
LTYKDAMDSKYKVFWEAAMMKERGGPDKAGTFTKIGKLSEGRKAVTSKWV
FSYKTNEKEVITAFKARIVARGFSQIPGVDFHDSASACPSTTSIKTVVVV
ATEKKKKMFHWEIKQVYIHAKLKEEIFTRLPQGCGDMLGKVCKVERALYG
LKQSGREWGFEAADTLIANGYEQCRADPCVFRRMVDGEVVGLIYVDDILL
VASEQECQELLASLQKKFPVKDLGECTWYDGIEMGLENGITKLSQTAYIE
SIIKRFNVTTTAPTPAVPGADLGPKRDDEPTVDKPVREALGCLMWVVHTR
PDIALPLNKIQKVAHSPTDTILXKRFNVTTTAPTPAVPGADLGPKRDDEP
TVDKPVREALGCLMWVVHTRPDIALPLNKIQKVAYSPTDRIWQALLRAFD
NGNGTTKTQRVPAQSSSEEEYLAVGEGVKEALHVRAVLSFVAPETSGTIK
VLEDNKGALALVQNPFSSARSKHIDVRYHFIRELFKSGKITAEYVPTKEQ
HADILTKVLGRTKPEYHRKALMNLPE

mRNA from alignment at Scaffold_481:247194..249741+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft903_4a-0001 ID=EsuBft903_4a-0001|Name=EsuBft903_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2548bp|location=Sequence derived from alignment at Scaffold_481:247194..249741+ (Ectocarpus subulatus male Bft15b)
ATGGGGGCGCCTGCGGCACCCGGAAATGGTATGCAGGGGGACGAACACGG
AGGTCCCCCGTCGCCTTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCCGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACCCCGGTGAGAACGATGG
TGACGGCAATGAAGGCGGCGACCCTCAGACGCTCGAGGAGTTGAAGTACG
ACCCTGCCGACAGCCGCTACCCGTCAGGAACGGAAGGGCAGAAACTTCTT
TGATGAGCGTCGAGCGCCGGCCTGCTGCGCCATGTGCTCCAGCCCGGCCG
CACGCGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGAGCCGAGCG
AGGCGCCAGCCCCCGAGGAGGCGCTGTTATCAACCGTCCTGGAGACCGAA
AACGGTCCGGAGATCGTTGCGGAATATATACGCGAATCGCTGTTGGAGGG
CAAGACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCAGTTACAATACGA
TCTAGTGAAGGGGCTCCATCCTGATGGAGGGGAGCTGGAGCTGGCATTCA
GTGCAAACGAAAAGGACGACGGGTCCCCGCAACCACTCCTTGACCCGGAG
CTAAGTATTCCCTCGCCGATCGGGCAGAAGCCTAACGATGTAGAGGCTGT
CCCGCTTACGTACAAAGATGCGATGGATTCCAAGTACAAAGTGTTTTGGG
AAGCGGCGATGATGAAAGAGAGGGGTGGTCCAGACAAGGCGGGGACTTTC
ACGAAAATTGGCAAACTTTCCGAGGGGCGGAAGGCGGTGACTTCGAAGTG
GGTGTTTTCGTACAAGACGAACGAGAAGGAAGTGATCACCGCCTTCAAAG
CCCGTATCGTTGCGCGTGGTTTCTCACAGATTCCGGGGGTAGATTTCCAC
GACTCAGCTTCTGCATGCCCGTCTACGACGTCCATCAAAACCGTGGTTGT
CGTAGCCACCGAGAAGAAAAAGAAGATGTTCCACTGGGAAATTAAACAAG
TGTACATTCACGCTAAGCTCAAAGAAGAGATTTTTACCAGGCTTCCCCAG
GGTTGTGGTGACATGCTTGGCAAGGTGTGCAAGGTTGAGCGTGCACTGTA
TGGCCTGAAACAAAGCGGTCGCGAGTGGGGGTTTGAAGCTGCTGATACCC
TCATCGCGAATGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTTTTCCGT
AGGATGGTTGACGGAGAGGTCGTAGGTCTGATCTACGTAGACGACATTTT
GTTGGTGGCGTCCGAGCAAGAGTGTCAAGAGTTGCTTGCTTCCCTCCAGA
AGAAGTTTCCGGTGAAGGATTTGGGAGAATGCACGTGGTATGATGGCATT
GAGATGGGCCTAGAGAACGGCATCACCAAGTTGTCCCAGACGGCATACAT
CGAGAGCATCATCAAGCGGTTTAACGTGACTACTACCGCCCCCACGCCTG
CTGTCCCCGGCGCCGACCTAGGGCCGAAACGAGATGACGAGCCCACGGTG
GACAAGCCAGTAAGGGAGGCACTCGGGTGCCTGATGTGGGTGGTGCATAC
GAGGCCGGACATCGCTCTGCCGTTGAACAAGATCCAGAAGGTGGCTCACT
CTCCCACCGACACGATATTGNTCAAGCGGTTTAACGTGACTACTACCGCC
CCCACGCCTGCTGTCCCCGGCGCCGACCTAGGGCCGAAACGAGATGACGA
GCCCACGGTGGACAAGCCAGTAAGGGAGGCACTCGGGTGCCTGATGTGGG
TGGTGCATACGAGGCCGGACATCGCTCTGCCGTTGAACAAGATCCAGAAG
GTGGCTTACTCTCCCACCGACAGGATATGGCAGGCGCTTCTGAGGGTCAT
GTCTTACCCCAACGCCACCAAGGACCTGAGCCTCACCTATGTGCGGGGAT
CAGGGCTAGATCTAGGAGTGTGGGTCGATGCCAGCTACGCCGACGACGTT
GTTGACAGGCGTTCGACAACGGNAACGGAACCACAAAAACGCAGCGTGTG
CCGGCGCAGTCATCCTCGGAGGAAGAGTATCTAGCAGTCGGGGAGGGAGT
GAAGGAGGCGTTGCATGTGCGTGCGGTTCTGTCTTTCGTAGCGCCTGAGA
CGAGTGGGACGATCAAGGTCCTTGAAGACAACAAGGGAGCTCTTGCCCTG
GTGCAGAACCCCTTCAGCTCGGCGAGGAGCAAGCACATCGACGTGCGGTA
CCACTTTATCCGCGAGCTCTTCAAGTCGGGCAAGATCACCGCAGAGTATG
TCCCGACGAAAGAGCAGCACGCCGACATACTGACCAAGGTCCTTGGTAGG
ACCAAACCGGAGTACCACCGGAAGGCTCTGATGAACCTCCCGGAGTAG

Coding sequence (CDS) from alignment at Scaffold_481:247194..249741+

>EsuBft903_4a-0001 ID=EsuBft903_4a-0001|Name=EsuBft903_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2331bp|location=Sequence derived from alignment at Scaffold_481:247194..249741+ (Ectocarpus subulatus male Bft15b)
ATGGGGGCGCCTGCGGCACCCGGAAATGGTATGCAGGGGGACGAACACGG
AGGTCCCCCGTCGCCTTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCCGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACCCCGAAACTTCTTTGAT
GAGCGTCGAGCGCCGGCCTGCTGCGCCATGTGCTCCAGCCCGGCCGCACG
CGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGAGCCGAGCGAGGC
GCCAGCCCCCGAGGAGGCGCTGTTATCAACCGTCCTGGAGACCGAAAACG
GTCCGGAGATCGTTGCGGAATATATACGCGAATCGCTGTTGGAGGGCAAG
ACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCAGTTACAATACGATCTA
GTGAAGGGGCTCCATCCTGATGGAGGGGAGCTGGAGCTGGCATTCAGTGC
AAACGAAAAGGACGACGGGTCCCCGCAACCACTCCTTGACCCGGAGCTAA
GTATTCCCTCGCCGATCGGGCAGAAGCCTAACGATGTAGAGGCTGTCCCG
CTTACGTACAAAGATGCGATGGATTCCAAGTACAAAGTGTTTTGGGAAGC
GGCGATGATGAAAGAGAGGGGTGGTCCAGACAAGGCGGGGACTTTCACGA
AAATTGGCAAACTTTCCGAGGGGCGGAAGGCGGTGACTTCGAAGTGGGTG
TTTTCGTACAAGACGAACGAGAAGGAAGTGATCACCGCCTTCAAAGCCCG
TATCGTTGCGCGTGGTTTCTCACAGATTCCGGGGGTAGATTTCCACGACT
CAGCTTCTGCATGCCCGTCTACGACGTCCATCAAAACCGTGGTTGTCGTA
GCCACCGAGAAGAAAAAGAAGATGTTCCACTGGGAAATTAAACAAGTGTA
CATTCACGCTAAGCTCAAAGAAGAGATTTTTACCAGGCTTCCCCAGGGTT
GTGGTGACATGCTTGGCAAGGTGTGCAAGGTTGAGCGTGCACTGTATGGC
CTGAAACAAAGCGGTCGCGAGTGGGGGTTTGAAGCTGCTGATACCCTCAT
CGCGAATGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTTTTCCGTAGGA
TGGTTGACGGAGAGGTCGTAGGTCTGATCTACGTAGACGACATTTTGTTG
GTGGCGTCCGAGCAAGAGTGTCAAGAGTTGCTTGCTTCCCTCCAGAAGAA
GTTTCCGGTGAAGGATTTGGGAGAATGCACGTGGTATGATGGCATTGAGA
TGGGCCTAGAGAACGGCATCACCAAGTTGTCCCAGACGGCATACATCGAG
AGCATCATCAAGCGGTTTAACGTGACTACTACCGCCCCCACGCCTGCTGT
CCCCGGCGCCGACCTAGGGCCGAAACGAGATGACGAGCCCACGGTGGACA
AGCCAGTAAGGGAGGCACTCGGGTGCCTGATGTGGGTGGTGCATACGAGG
CCGGACATCGCTCTGCCGTTGAACAAGATCCAGAAGGTGGCTCACTCTCC
CACCGACACGATATTGNTCAAGCGGTTTAACGTGACTACTACCGCCCCCA
CGCCTGCTGTCCCCGGCGCCGACCTAGGGCCGAAACGAGATGACGAGCCC
ACGGTGGACAAGCCAGTAAGGGAGGCACTCGGGTGCCTGATGTGGGTGGT
GCATACGAGGCCGGACATCGCTCTGCCGTTGAACAAGATCCAGAAGGTGG
CTTACTCTCCCACCGACAGGATATGGCAGGCGCTTCTGAGGGCGTTCGAC
AACGGNAACGGAACCACAAAAACGCAGCGTGTGCCGGCGCAGTCATCCTC
GGAGGAAGAGTATCTAGCAGTCGGGGAGGGAGTGAAGGAGGCGTTGCATG
TGCGTGCGGTTCTGTCTTTCGTAGCGCCTGAGACGAGTGGGACGATCAAG
GTCCTTGAAGACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCTTCAG
CTCGGCGAGGAGCAAGCACATCGACGTGCGGTACCACTTTATCCGCGAGC
TCTTCAAGTCGGGCAAGATCACCGCAGAGTATGTCCCGACGAAAGAGCAG
CACGCCGACATACTGACCAAGGTCCTTGGTAGGACCAAACCGGAGTACCA
CCGGAAGGCTCTGATGAACCTCCCGGAGTAG