EsuBft903_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft903_3a-0001
Unique Name	EsuBft903_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_481	contig	Scaffold_481:238643..240839 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft903_3
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	PTHR19446
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SSF56672
Protein domains	IPR000477
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Note	transposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	2115
Hectar predicted targeting category	mitochondrion
Evalue	4.45e-90
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Ribonuclease H protein
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft903_3a	EsuBft903_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_481 238643..240839 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_3a-0001-exon	agat-exon-82308	Ectocarpus subulatus male Bft15b	exon	Scaffold_481 238643..239797 +
EsuBft903_3a-0001-exon	EsuBft903_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_481 239880..240839 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_3a-0001-exon	agat-five_prime_utr-14865	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_481 238643..238747 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_3a-0001-cds	EsuBft903_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_481 238748..239797 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_3a-0001-exon	agat-three_prime_utr-22917	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_481 240732..240839 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft903_3a-0001	EsuBft903_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_481 238748..240731 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_481:238643..240839+
coding sequence from alignment at Scaffold_481:238643..240839+

spliced messenger RNA

>EsuBft903_3a-0001 ID=EsuBft903_3a-0001|Name=EsuBft903_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2115bp|location=Sequence derived from alignment at Scaffold_481:238643..240839+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAGCGCAGCACGAGATCTCCGAAGCGTCTAAAGCGATTAAGGCGGCCC
AGCAGCAACGGCGTGGGGCTTCAAAGAACAACGCCTTCGAGGCGACCCTG
AATGCATGCTCAAGGCGGCGCGGAAGAAGCGCATCCTCGCGAGGTGGAGA
GCACTTGAAACGTTCTTCGAGGGCTTTGTACGGCAGCTCGAGAAGAAGAG
CCGCGAGGCGGATCAGGCGGGTTTCTACAGGCACCTGCAGATGATCGACG
TCGAAGGGAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGGC
AAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGGTT
CCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTG
ACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCT
CTACTTGAGGTTGAGGAAGCGGTACGGGAAAGGGACAACAGAAAGGCCGT
CGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGAAG
GTCAAGGTCTCCTCCGCGAATTCCACGCCATTGTCGTGAACGTGTGGCAG
ACTGGGGACGTACCACAGCAGTGGAAGGATGCCACCATCAAAGTGCTGTT
CAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCGCTCG
TCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTGAGC
CACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCG
CCCACACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATG
AGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTC
ACCAAGGCATACGATTCGGTAGACCGAGACCTACTGTGGGACGTGCTCCG
ACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACG
AGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGG
TTCGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGCT
GTTCAACTTGTTCTTTGCCGTGATTCTCATGGTCGCCGTGGCCGAGTTCG
ACAGGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTG
GAGTACACGGGCAAGAAGGGAAAGTCAGCGGGGAAGAAGCCGACGGTGGT
GACGGACGCGGAGGCCTTGTGGGCCATGCTCCACGCTGACGACGCGGCCA
TCGTCTCGCGCTCGCCGGAGAGCCTCGAGACGATGATGTCGATCATCGTG
CGCGTGGCCGGCCTGTTTGGACTGATGGTGTTGGAGCCACAGACGGAGAT
CATGTGCATGCTGCCGAAAGGGATCGAGGAACGCCCGTTCACGGTCAGCG
CCGCCGGCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGT
ACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCAGCTG
CCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGTACGACAGGC
GACGGGCCGACCGCCAGCTCAAGATCCGGCTTCTCCAGGCTGAAGTGGTG
GAGCCTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGCACTA
CACGAAGCTCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCGGCT
GGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTC
ATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAG
ACTGTGTTTCGCGGGCTTTGTTATGCGCATGAAGGACAACCGCCTCCCCA
AGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGCGGG
CAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAA
CATGTGAGACGAAAAGCAAGGGGGGAAATGGAAAGAGAGCGCCAAGGACC
CGGAGGTGTGGCACAACCAGGTCGAGGACGGGGCGGCATGGCTCATGAGT
AAATGGCACAGGCAG

protein sequence of EsuBft903_3a-0001

>EsuBft903_3 ID=EsuBft903_3|Name=EsuBft903_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=633bp
MLKAARKKRILARWRALETFFEGFVRQLEKKSREADQAGFYRHLQMIDVE
GKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADK
VKRWPTCVPLDDIPSLLEVEEAVRERDNRKAVGPDDLPAELIKLFLDEGQ
GLLREFHAIVVNVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVA
HAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHEL
ARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEG
MRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAVILMVAVAEFDR
DPKVTADMVKIGTQVEYTGKKGKSAGKKPTVVTDAEALWAMLHADDAAIV
SRSPESLETMMSIIVRVAGLFGLMVLEPQTEIMCMLPKGIEERPFTVSAA
GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRR
ADRQLKIRLLQAEVVEPLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWS
KRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMKDNRLPKR
MLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNM

mRNA from alignment at Scaffold_481:238643..240839+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft903_3a-0001 ID=EsuBft903_3a-0001|Name=EsuBft903_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2197bp|location=Sequence derived from alignment at Scaffold_481:238643..240839+ (Ectocarpus subulatus male Bft15b)
CGAAGCGCAGCACGAGATCTCCGAAGCGTCTAAAGCGATTAAGGCGGCCC
AGCAGCAACGGCGTGGGGCTTCAAAGAACAACGCCTTCGAGGCGACCCTG
AATGCATGCTCAAGGCGGCGCGGAAGAAGCGCATCCTCGCGAGGTGGAGA
GCACTTGAAACGTTCTTCGAGGGCTTTGTACGGCAGCTCGAGAAGAAGAG
CCGCGAGGCGGATCAGGCGGGTTTCTACAGGCACCTGCAGATGATCGACG
TCGAAGGGAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGGC
AAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGGTT
CCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTG
ACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCT
CTACTTGAGGTTGAGGAAGCGGTACGGGAAAGGGACAACAGAAAGGCCGT
CGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGAAG
GTCAAGGTCTCCTCCGCGAATTCCACGCCATTGTCGTGAACGTGTGGCAG
ACTGGGGACGTACCACAGCAGTGGAAGGATGCCACCATCAAAGTGCTGTT
CAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCGCTCG
TCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTGAGC
CACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCG
CCCACACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATG
AGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTC
ACCAAGGCATACGATTCGGTAGACCGAGACCTACTGTGGGACGTGCTCCG
ACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACG
AGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGG
TTCGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGCT
GTTCAACTTGTTCTTTGCCGTGATTCTCATGGTCGCCGTGGCCGAGTTCG
ACAGGGTCCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTG
GAGTACACGGGCAAGAGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGA
CGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGAAG
GGAAAGTCAGCGGGGAAGAAGCCGACGGTGGTGACGGACGCGGAGGCCTT
GTGGGCCATGCTCCACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGG
AGAGCCTCGAGACGATGATGTCGATCATCGTGCGCGTGGCCGGCCTGTTT
GGACTGATGGTGTTGGAGCCACAGACGGAGATCATGTGCATGCTGCCGAA
AGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGACGTACA
AGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGG
AAGGCCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTA
CCGCCGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCAGC
TCAAGATCCGGCTTCTCCAGGCTGAAGTGGTGGAGCCTCTCCTGTATGGG
TGCGCCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGAC
CCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCT
CAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAG
GAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTT
TGTTATGCGCATGAAGGACAACCGCCTCCCCAAGCGCATGCTGTTAGGAG
CGATGGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTG
TCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGTGAGACGAAAAGCA
AGGGGGGAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGCACAACC
AGGTCGAGGACGGGGCGGCATGGCTCATGAGTAAATGGCACAGGCAG

Coding sequence (CDS) from alignment at Scaffold_481:238643..240839+

>EsuBft903_3a-0001 ID=EsuBft903_3a-0001|Name=EsuBft903_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1902bp|location=Sequence derived from alignment at Scaffold_481:238643..240839+ (Ectocarpus subulatus male Bft15b)
ATGCTCAAGGCGGCGCGGAAGAAGCGCATCCTCGCGAGGTGGAGAGCACT
TGAAACGTTCTTCGAGGGCTTTGTACGGCAGCTCGAGAAGAAGAGCCGCG
AGGCGGATCAGGCGGGTTTCTACAGGCACCTGCAGATGATCGACGTCGAA
GGGAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGGCAAGGT
CCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGGTTCCACA
AGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTGACAAG
GTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTCTACT
TGAGGTTGAGGAAGCGGTACGGGAAAGGGACAACAGAAAGGCCGTCGGGC
CGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGAAGGTCAA
GGTCTCCTCCGCGAATTCCACGCCATTGTCGTGAACGTGTGGCAGACTGG
GGACGTACCACAGCAGTGGAAGGATGCCACCATCAAAGTGCTGTTCAAGA
AGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCGCTCGTCGCA
CACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTGAGCCACTA
CTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCAC
ACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTC
GCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAA
GGCATACGATTCGGTAGACCGAGACCTACTGTGGGACGTGCTCCGACGCT
TCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGC
ATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGA
CGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCA
ACTTGTTCTTTGCCGTGATTCTCATGGTCGCCGTGGCCGAGTTCGACAGG
GACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTA
CACGGGCAAGAAGGGAAAGTCAGCGGGGAAGAAGCCGACGGTGGTGACGG
ACGCGGAGGCCTTGTGGGCCATGCTCCACGCTGACGACGCGGCCATCGTC
TCGCGCTCGCCGGAGAGCCTCGAGACGATGATGTCGATCATCGTGCGCGT
GGCCGGCCTGTTTGGACTGATGGTGTTGGAGCCACAGACGGAGATCATGT
GCATGCTGCCGAAAGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGCC
GGCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCAT
CTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCAGCTGCCGAG
CGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGTACGACAGGCGACGG
GCCGACCGCCAGCTCAAGATCCGGCTTCTCCAGGCTGAAGTGGTGGAGCC
TCTCCTGTATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGCACTACACGA
AGCTCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAGC
AAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCA
GGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGT
GTTTCGCGGGCTTTGTTATGCGCATGAAGGACAACCGCCTCCCCAAGCGC
ATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGCGGGCAGGA
GAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGT
GA