EsuBft901_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft901_7a-0001
Unique NameEsuBft901_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_20contigScaffold_20:1265929..1268547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCQ0
ProteomeIdEsuBft901_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length100
Hectar predicted targeting categoryother localisation
Evalue1.64e-14
EggNOG OGs28MX6@1|root,2QUFK@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft901_7aEsuBft901_7aEctocarpus subulatus male Bft15bgeneScaffold_20 1265929..1268547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_7a-0001EsuBft901_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_20 1265929..1268547 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_7a-0001-exonagat-exon-61643Ectocarpus subulatus male Bft15bexonScaffold_20 1265929..1266147 -
EsuBft901_7a-0001-exonagat-exon-61646Ectocarpus subulatus male Bft15bexonScaffold_20 1266769..1267008 -
EsuBft901_7a-0001-exonagat-exon-61645Ectocarpus subulatus male Bft15bexonScaffold_20 1267288..1267371 -
EsuBft901_7a-0001-exonagat-exon-61647Ectocarpus subulatus male Bft15bexonScaffold_20 1267655..1267902 -
EsuBft901_7a-0001-exonagat-exon-61644Ectocarpus subulatus male Bft15bexonScaffold_20 1268246..1268282 -
EsuBft901_7a-0001-exonEsuBft901_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_20 1268371..1268547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_7a-0001-cdsEsuBft901_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_20 1265929..1266147 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft901_7a-0001 ID=EsuBft901_7a-0001|Name=EsuBft901_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1005bp|location=Sequence derived from alignment at Scaffold_20:1265929..1268547- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCCGTGTTTTCCCTTTCAGGTGGCCCTCACATGACTGGGTTCCT
GGGACAGAAGTTCGACTTCACAGGAGAGGATGGAGGGTGGTACTCCATCA
TCGCCGACTCCAACATGAACGTGAACATGCGGGTCACTTCCCCGTCGTCG
ACCTGCCCGAGATCACCTACATCACAGAGATTGGGGGCGTACTCGAGCGC
CGTACTCGAGCGCCGCCTTTCCGTCCTCACCACCGACGCAGACGGGTCCG
ACCACAGCATCGTCATCGAGGTCGCCGAGCCCCACAGCTTGGACAGTTCT
TGTCCGGCAGGCGTTTCGCCTTGCCTCGCGGACGGCGCGCTGAGGGTGCT
CCTCGACGGGGACGAGGCGCTGTTCGCCCACGGCACGGTTTCCCTGGGCC
TAGGCGTGGAAATCTCTGCGGTCAACCTCCCCGGCGCCTGCCGCTCGTTC
GGCTTCGAGAAGTACTGGGAGCACAAGAAGCTCGAGTACGCCACCGGCGG
CCGTCAGCTGCGCACCCAGCCGAGCATGGGCGAATGGATCCTCGGGGACC
CTACGGCTACCAACATGGACGAGTGTGTGGAGTACGTGGCGCGCGCTGAG
GCCGAAGAGGGTGGGATGTTTGCCCACCAGTCCGAGCACGCCTCCTTCCA
GATCGTGACCCCCGCTGCCACCGTCCGCCTGAGCCACGGCAGGCTTCACC
AGATCGCCATGCGTGACCCGACCGACCAGTACGACCTCCCAGACCACCTG
ACCTGGCAGATGAACCTGGCCGTTGACCACAACCAGGTGAGCTATGCTGC
CAAGGGCATCCTCGGCGAAACATTCGTGCCGACTCGTGACGCCAGCGGTA
AGCCCATCATGACCGGCATGGAGGCCATCCGCGGAACGGAGGAAGACTGT
AAGTGTGGCGGGAACGTGATGATGAACGTTCAGTACGTGTGCACGCTCAG
TGCCTTCAAACTGCCTGATCAATTTGACACAGACCTAATGCATCTTGAAG
CCTGA
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protein sequence of EsuBft901_7a-0001

>EsuBft901_7 ID=EsuBft901_7|Name=EsuBft901_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=334bp
MPPVFSLSGGPHMTGFLGQKFDFTGEDGGWYSIIADSNMNVNMRVTSPSS
TCPRSPTSQRLGAYSSAVLERRLSVLTTDADGSDHSIVIEVAEPHSLDSS
CPAGVSPCLADGALRVLLDGDEALFAHGTVSLGLGVEISAVNLPGACRSF
GFEKYWEHKKLEYATGGRQLRTQPSMGEWILGDPTATNMDECVEYVARAE
AEEGGMFAHQSEHASFQIVTPAATVRLSHGRLHQIAMRDPTDQYDLPDHL
TWQMNLAVDHNQVSYAAKGILGETFVPTRDASGKPIMTGMEAIRGTEEDC
KCGGNVMMNVQYVCTLSAFKLPDQFDTDLMHLEA
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mRNA from alignment at Scaffold_20:1265929..1268547-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft901_7a-0001 ID=EsuBft901_7a-0001|Name=EsuBft901_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2619bp|location=Sequence derived from alignment at Scaffold_20:1265929..1268547- (Ectocarpus subulatus male Bft15b)
ATGCCTCCCGTGTTTTCCCTTTCAGGTGGCCCTCACATGACTGGGTTCCT
GGGACAGAAGTTCGACTTCACAGGAGAGGATGGAGGGTGGTACTCCATCA
TCGCCGACTCCAACATGAACGTGAACATGCGGGTCACTTCCCCGTCGTCG
ACCTGCCCGAGATCACCTACATCACAGGTACGCGTACTCTGATTCTCCAC
AAATCACGAGGGAAATGAGGTTGGGTTTCAGCAATATTTTCGAGCAGTTC
AGCGAGAAAATACAGAGATTGGGGGCGTACTCGAGCGCCGTACTCGAGCG
CCGTACTCGAGCGCCGCTTGCTTGAGTCCTGTATCCGTTGACCACGCACT
TGAAGGGCAACCTTTTCCTACCGGAAATTGCAACAACAGTCTATAACTCG
ATTTCGGGGTGTCAGAATCTGTCTTCGACGCGCGGGTTACGCGATGCAAG
ACTACAGTACCTTTCGCGGTCGAGCGAGTAGAGCGCAATACTATTCTCGG
CGAAACTTCACCCCAACTGGAAAAGAAACGTGTGCCAGGATAGGAGCAAC
TCATCATTCCCATGGCCGCACACACGGCATGTCATACCATGTGAAACCAA
AACGTTCCCTTTTCGTTGCCTCCCTCTCTCTGCTGGTGCGGACAGGCCTT
TCCGTCCTCACCACCGACGCAGACGGGTCCGACCACAGCATCGTCATCGA
GGTCGCCGAGCCCCACAGCTTGGACAGTTCTTGTCCGGCAGGCGTTTCGC
CTTGCCTCGCGGACGGCGCGCTGAGGGTGCTCCTCGACGGGGACGAGGCG
CTGTTCGCCCACGGCACGGTTTCCCTGGGCCTAGGCGTGGAAATCTCTGC
GGTCAACCTCCCCGGCGCCTGCCGCTCGTTCGGCTTCGAGAAGGTACGCC
GAACGTCATTCTTTTATTATTTCAGTAGCTTCTTCCCGCCTCGCCTCGCC
TCGCCTCGCCTGGTTCGGTTGCTCTTCTAGACGTCGTTGTTTCAGTCAAC
CGCATCTCCCCCCTCCTGCTGTACGTCCCACTGGTCACCTCGAACACTTG
TCGTCTGTGGAGAAATGAATGCCCAGGGCGACTGTGGCGACTGCTAGGAG
CCCCACCCGTTTAGTTCTCACTACCGTGTGGTGGCTGCGATTGCCTGTCG
CGTGACGGTCCTGGTATTGTTTGCAGTACTGGGAGCACAAGAAGCTCGAG
TACGCCACCGGCGGCCGTCAGCTGCGCACCCAGCCGAGCATGGGCGAATG
GATCCTCGGGGTAAGAAGTAGAAATTGATGGCCAACTCTTTGTGTTTACG
GGCATAACATGAACGTCATGTAACTGTTGTTGCAAAGCCCTGATGAACGT
TCCGCCAAATGTTCCTCGTATGATTTGAAGGAAAAACGCTGGGGTACTCG
TGCTGATGATGCCTCGATCAACCCGTGGACAACCTCAAATTTGCACTTGA
ACGTGGTTCTTACTGCTGGTCGTAGTTCCAAACGTGATGCAGTATCCCAT
TCCGTTTTTGTTCTTCACCTGCCGCTTTTTTTGTTCCAGGACCCTACGGC
TACCAACATGGACGAGTGTGTGGAGTACGTGGCGCGCGCTGAGGCCGAAG
AGGGTGGGATGTTTGCCCACCAGTCCGAGCACGCCTCCTTCCAGATCGTG
ACCCCCGCTGCCACCGTCCGCCTGAGCCACGGCAGGCTTCACCAGATCGC
CATGCGTGACCCGACCGACCAGTACGACCTCCCAGACCACCTGACCTGGC
AGATGAACCTGGCCGTTGACCACAACCAGGTGAGAGATGTGTGTACATAT
GCGTGCCATATGTTGTTAGCCTATAGTTGGCAGCATGCCCAGGATGAGTG
ACGGAGCTATCGCCCCCTGGTCTACATGTTTCGACTTTCTTGCTTACTGT
CACACTGCACTGCTGTCTTCAGTATCTCTTGCTGGCGATCAGGTACCACA
CTCAGTAGTACGAGGGGTGGAACCTTAATCTTGGGTGGGGCTTGAAAGGA
TCACGTATTCGAACGTTCGAAGTACGGGAGACCTGCTGGAGAAACACGGC
ACCTACTTGCAGAGCACAGTAGGGGGGGGGGCTTCATGTTTTCGTATGGT
TATTCTTCCGGGAGGGCAAGGTTTGCCTCCCCTGTTTGCGCGGGGGGACG
GGGTCGGTTGGGAACTGAGTGAGGGGACGGAAGCCCAATCACTCCTCAAG
ATATCCCACGTCGTCGCGCACGGGGGGGTAATACTCTTCTCGCAACGTTC
TAGTTACACAGTTTCGGGAAAGGTCCAAGCTCACCACGTGTACGCAAGGG
CGCAGCAGCAGCATCAGACAGACATGAGAGTGCCTCTCAATAGAAGAGGA
AAGTCTCCCAAGCAAAAAGCGTTTCTTGTTGCTGCTTCCGCTGTACACAG
GTGAGCTATGCTGCCAAGGGCATCCTCGGCGAAACATTCGTGCCGACTCG
TGACGCCAGCGGTAAGCCCATCATGACCGGCATGGAGGCCATCCGCGGAA
CGGAGGAAGACTGTAAGTGTGGCGGGAACGTGATGATGAACGTTCAGTAC
GTGTGCACGCTCAGTGCCTTCAAACTGCCTGATCAATTTGACACAGACCT
AATGCATCTTGAAGCCTGA
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Coding sequence (CDS) from alignment at Scaffold_20:1265929..1268547-

>EsuBft901_7a-0001 ID=EsuBft901_7a-0001|Name=EsuBft901_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1005bp|location=Sequence derived from alignment at Scaffold_20:1265929..1268547- (Ectocarpus subulatus male Bft15b)
ATGCCTCCCGTGTTTTCCCTTTCAGGTGGCCCTCACATGACTGGGTTCCT
GGGACAGAAGTTCGACTTCACAGGAGAGGATGGAGGGTGGTACTCCATCA
TCGCCGACTCCAACATGAACGTGAACATGCGGGTCACTTCCCCGTCGTCG
ACCTGCCCGAGATCACCTACATCACAGAGATTGGGGGCGTACTCGAGCGC
CGTACTCGAGCGCCGCCTTTCCGTCCTCACCACCGACGCAGACGGGTCCG
ACCACAGCATCGTCATCGAGGTCGCCGAGCCCCACAGCTTGGACAGTTCT
TGTCCGGCAGGCGTTTCGCCTTGCCTCGCGGACGGCGCGCTGAGGGTGCT
CCTCGACGGGGACGAGGCGCTGTTCGCCCACGGCACGGTTTCCCTGGGCC
TAGGCGTGGAAATCTCTGCGGTCAACCTCCCCGGCGCCTGCCGCTCGTTC
GGCTTCGAGAAGTACTGGGAGCACAAGAAGCTCGAGTACGCCACCGGCGG
CCGTCAGCTGCGCACCCAGCCGAGCATGGGCGAATGGATCCTCGGGGACC
CTACGGCTACCAACATGGACGAGTGTGTGGAGTACGTGGCGCGCGCTGAG
GCCGAAGAGGGTGGGATGTTTGCCCACCAGTCCGAGCACGCCTCCTTCCA
GATCGTGACCCCCGCTGCCACCGTCCGCCTGAGCCACGGCAGGCTTCACC
AGATCGCCATGCGTGACCCGACCGACCAGTACGACCTCCCAGACCACCTG
ACCTGGCAGATGAACCTGGCCGTTGACCACAACCAGGTGAGCTATGCTGC
CAAGGGCATCCTCGGCGAAACATTCGTGCCGACTCGTGACGCCAGCGGTA
AGCCCATCATGACCGGCATGGAGGCCATCCGCGGAACGGAGGAAGACTGT
AAGTGTGGCGGGAACGTGATGATGAACGTTCAGTACGTGTGCACGCTCAG
TGCCTTCAAACTGCCTGATCAATTTGACACAGACCTAATGCATCTTGAAG
CCTGA
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