EsuBft901_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft901_4a-0001
Unique NameEsuBft901_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_20contigScaffold_20:1307070..1310048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft901_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length92
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft901_4aEsuBft901_4aEctocarpus subulatus male Bft15bgeneScaffold_20 1307070..1310048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_4a-0001EsuBft901_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_20 1307070..1309930 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_4a-0001-exonagat-exon-61625Ectocarpus subulatus male Bft15bexonScaffold_20 1307070..1307154 -
EsuBft901_4a-0001-exonEsuBft901_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_20 1307214..1307731 -
EsuBft901_4a-0001-exonagat-exon-61626Ectocarpus subulatus male Bft15bexonScaffold_20 1307844..1307949 -
EsuBft901_4a-0001-exonagat-exon-61627Ectocarpus subulatus male Bft15bexonScaffold_20 1309833..1310048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_4a-0001-cdsEsuBft901_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_20 1307070..1307154 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_4a-0001-exonagat-five_prime_utr-14858Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_20 1309931..1310048 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft901_4a-0001 ID=EsuBft901_4a-0001|Name=EsuBft901_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=925bp|location=Sequence derived from alignment at Scaffold_20:1307070..1310048- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AATTTACCCTCAACTGGGAACCTCTTGTGGCCAGGATGGGTAATTCGATG
GAAGTGTCACAAGGTTCTTTCAGGATCGACTCCAAGAGGTGTTCTCAGGA
CTGACACACATTGTGTCCATGGGAAAATATCCAAGTCAGGAGAAAAAGTG
TGCACCAAAGGAGATTCGAACCAGTATCCTGCCGCTGACGCCACATGCGA
AGGTGTACCGATTCAGGCACGCTCTCCGGCACAAGGAAACGTTGACGCTG
GACGATGTGCTGAAGGAGGTCGCGATCGAGTACAAGGCGATCCGGGAGAA
GTGGAGAAGGGGAAAGGCAAAGGCGACACCGCTGGTAGAGGCGCCGGCGG
TACCCGGCAACAGGATCCAATGGGACGATAGTGGAGGTAGCGTCCCCCGG
TCGCCCCATTCGGGAGGGGGCGACTTCCGTGCTGATGATGACTTCAACAA
CCCCACAGCCAGCAGCAGCAGCAGCAACAGCCCCGACGACGACGGTGGTG
GCGGCAACAGCTGCCCCGGTGACGCCGGCGGCAGCGAGCCTGGCGACCCT
GATAAAGACGGTGGTGGCGGCAGGGAACCCGGCGAAGACTCCGAGAACCT
CGAGGAGTACAAGTTCGATCCCGCCGACAGCTGCTACCCGCCGGAAATAG
AAGGGAATATACTTCTGTGGGGAACCTCGAGTGCAGGACAGCTCCGCCAC
GCGCTCGAGCGCGGCGGCACGCGGAAGCAGACCCGGGAGCTGCAGGGTTC
TGAGGAGGCGCCGAACCCCGAGGAGGCGTTGCTGGCGACCGCCCTGGAGA
CAGGGCGTAGATCGTCGGGGACAGCGTTTGCGAATCGCTGGCGCGAGATG
CAGAACGTGCTCCAGTCCAACGACCCAGAACAGCAAGCGTTCGATGCCGA
GGTCGAGGACCACGGGTTCCCCTGA
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protein sequence of EsuBft901_4a-0001

>EsuBft901_4 ID=EsuBft901_4|Name=EsuBft901_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=268bp
MGKYPSQEKKCAPKEIRTSILPLTPHAKVYRFRHALRHKETLTLDDVLKE
VAIEYKAIREKWRRGKAKATPLVEAPAVPGNRIQWDDSGGSVPRSPHSGG
GDFRADDDFNNPTASSSSSNSPDDDGGGGNSCPGDAGGSEPGDPDKDGGG
GREPGEDSENLEEYKFDPADSCYPPEIEGNILLWGTSSAGQLRHALERGG
TRKQTRELQGSEEAPNPEEALLATALETGRRSSGTAFANRWREMQNVLQS
NDPEQQAFDAEVEDHGFP
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mRNA from alignment at Scaffold_20:1307070..1310048-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft901_4a-0001 ID=EsuBft901_4a-0001|Name=EsuBft901_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2979bp|location=Sequence derived from alignment at Scaffold_20:1307070..1310048- (Ectocarpus subulatus male Bft15b)
AATTTACCCTCAACTGGGAACCTCTTGTGGCCAGGATGGGTAATTCGATG
GAAGTGTCACAAGGTTCTTTCAGGATCGACTCCAAGAGGTGTTCTCAGGA
CTGACACACATTGTGTCCATGGGAAAATATCCAAGTCAGGAGAAAAAGTG
TGCACCAAAGGAGATTCGAACCAGTATCCTGCCGCTGACGCCACATGCGA
AGGTGTACCGATTCAGGTAAAAGCCAATCGACGGATACCCTGCGAATCGG
ATCCTCCTTAACACTCTTCCAAGAAGCGGCGCAAATTGAAGGTCGCATCA
GCAGCGTCACGAGCATATGCGTGTCATCGTCATCGGATGCTGCAGCTAGG
AGCTAGACAAGTTGCTAGATTTCCCCAGATTGGCTATTCCTGCCTCAAAC
TGTTGCAGGGCGGTTTGGCCTCGGGCGGTGGGCTCTGCTGTAGCTTCTGC
TCGCCGCTGTAGCTCCACATCGAGAGACTCCCACAGGATGACCAGGGTAT
CTGCTTGTAGCTACGGGCTGGCCCTTCAATTCAAGCTACACAGCAAGCTC
CACCTCTCAGCAGTAGTCCAGCTGCAGCGCATCGCGCAATCTCGCTCTCA
ATCAGATGCTTCGCTCTCAATTTCACCAATATGCTGTTATTATTAGGCGA
CTCTATGTCGATGTGTATCCACTACCAAAAAGTACGCGCGGTGAATCTTC
TGCTTCAGGTGCTGTGTGAGAGAAATGATTCCGGCGACTTGACTGTAGAC
TACTGCCGTACATGGAACGTGGCGGAGAACACCGATTGCACAGGCACCGA
CGGTATTATCAGTCTCCCTGATACCGAGTGCAACTGTATCCAAATTGAAA
TCCCCCGACATCTTGACTTTGGAGTCGGGGATCTCACCTTGGTTACAGTT
GTACTCGGTGTAAGGGAGACTGACAACACCGTCGATGCCTGTGCAACCGG
TGTTCTCCGCCACAGCCTTCCACGTAATGCATGAGTCTACAGTCAAATCG
CCGGCATCATTACTCTCACCAGCACCTGAAGTAGAAAATTCGCCGGACGT
TATCAAAAGTTTGTCCGGCACGTTGGTAAAACACAGCATAGTTGAATGGA
AACAGTAGTTTGTGCACGACCAACGTCAATCCAAACGGCTACGCTTTTCC
AATCAACCTCTTCTTTCCTGTTTACTACCACTTTTTTCTTGTGATCACAT
GGCGCCACCGTTTGTCCCGCTTCCGAACGTACGCGACGACCTCGTACCAT
GGGGCGTTAGACGTTGGGTAAGTTGTGAGACGGCCGTAGTTTATCCGTAT
TCCCTCTCAGATGTGATTCAACACATAGGCGTGAGGACGAGTGACCTTTT
TTTCAGGCCCCAGTTCTTCGTACGAGGTAGAAATGCTCCCCATGTTAGAT
CTACCGGCAACAGCGGAGGGCACGCGAACAGGAGCGTGTTGTATACCTGA
AATGATAAAATGTGTGCCCCTCCCTCCTCGAAATTCATGGAGGGCCCATC
TCTCCCCGCTCCCTTGCGTGTCCACGCAAGAGATCAAACGAGCCTCCCAC
TTCTAAGTAACGGACAATAGAAACACGCTAGTGTCGTTCCCTCGAGGGAG
TCCACTAGGAATGGCGGGTTGTGAAGATGTGAAGATGGAGGTAGTAACGC
CTCCGGCGATCCCGCGACGGGAAGCTCAACAAGAGGTCACGAGTCTGAAG
CGGAAATGGGCTCGCTGTTGAAGAAGATCAGCCAGCTGACGATGCTGGTG
ACAAGTCTAGTTTCACGCAAGATGGGGGAGCTGCTCGCTTTCATGCATGA
AGCTTCCTGACCCATGCACTGACGAAGAGAGTGAAAAAAAAAAACATGAA
GAGGGCACACACGCCCCAGATACCGCTCCGAGAGCTGATAGGCATATACG
ACCCAGAATCGTCCATGCTAACGGCAGACGATCTACAGTCCCTGCCCTCC
ATGAAGATCCCCGTTGCTGAAAACCCAACAGGCACTGAACAAGATGCTTG
ACACTGCTGAATCCCTATCCAAGAGGGAACTTGAAGTCAACGAAACTTTG
TCCACCACCTTTCCTTGGTCGCCCTTTCGGATGAGTATGTCATGACTAGG
CACGCTCTCCGGCACAAGGAAACGTTGACGCTGGACGATGTGCTGAAGGA
GGTCGCGATCGAGTACAAGGCGATCCGGGAGAAGTGGAGAAGGGGAAAGG
CAAAGGTGAGCGAGGGCAAGAGCAGCGAGAGCGCGTCATGTCAAGATGAG
AGGGGCGGAGAACGACTCGAGGAGTGAGTCCGACCTCGTCGTGGCGGACG
CTCGTGGGCCAGGGCAGGCGACACCGCTGGTAGAGGCGCCGGCGGTACCC
GGCAACAGGATCCAATGGGACGATAGTGGAGGTAGCGTCCCCCGGTCGCC
CCATTCGGGAGGGGGCGACTTCCGTGCTGATGATGACTTCAACAACCCCA
CAGCCAGCAGCAGCAGCAGCAACAGCCCCGACGACGACGGTGGTGGCGGC
AACAGCTGCCCCGGTGACGCCGGCGGCAGCGAGCCTGGCGACCCTGATAA
AGACGGTGGTGGCGGCAGGGAACCCGGCGAAGACTCCGAGAACCTCGAGG
AGTACAAGTTCGATCCCGCCGACAGCTGCTACCCGCCGGAAATAGAAGGG
AATATACTTCTGTGGGGAACCTCGAGTGCAGGACAGCTCCGCCACGCGCT
CGAGCGCGGCGGCACGCGGAAGCAGACCCGGGAGCTGCAGGGTTCTGAGG
AGGCGCCGAACCCCGAGGAGGCGTTGCTGGCGACCGCCCTGGAGACAGGG
CGTAGATCGTCGGGGACAGCGTTTGCGAATCGCTGGTGAAGGAATACTGG
GAGGAGGACAAGGAGCGCCGTGCAAGCATGGAAGAGCTGTACAGGCGCGA
GATGCAGAACGTGCTCCAGTCCAACGACCCAGAACAGCAAGCGTTCGATG
CCGAGGTCGAGGACCACGGGTTCCCCTGA
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Coding sequence (CDS) from alignment at Scaffold_20:1307070..1310048-

>EsuBft901_4a-0001 ID=EsuBft901_4a-0001|Name=EsuBft901_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=807bp|location=Sequence derived from alignment at Scaffold_20:1307070..1310048- (Ectocarpus subulatus male Bft15b)
ATGGGAAAATATCCAAGTCAGGAGAAAAAGTGTGCACCAAAGGAGATTCG
AACCAGTATCCTGCCGCTGACGCCACATGCGAAGGTGTACCGATTCAGGC
ACGCTCTCCGGCACAAGGAAACGTTGACGCTGGACGATGTGCTGAAGGAG
GTCGCGATCGAGTACAAGGCGATCCGGGAGAAGTGGAGAAGGGGAAAGGC
AAAGGCGACACCGCTGGTAGAGGCGCCGGCGGTACCCGGCAACAGGATCC
AATGGGACGATAGTGGAGGTAGCGTCCCCCGGTCGCCCCATTCGGGAGGG
GGCGACTTCCGTGCTGATGATGACTTCAACAACCCCACAGCCAGCAGCAG
CAGCAGCAACAGCCCCGACGACGACGGTGGTGGCGGCAACAGCTGCCCCG
GTGACGCCGGCGGCAGCGAGCCTGGCGACCCTGATAAAGACGGTGGTGGC
GGCAGGGAACCCGGCGAAGACTCCGAGAACCTCGAGGAGTACAAGTTCGA
TCCCGCCGACAGCTGCTACCCGCCGGAAATAGAAGGGAATATACTTCTGT
GGGGAACCTCGAGTGCAGGACAGCTCCGCCACGCGCTCGAGCGCGGCGGC
ACGCGGAAGCAGACCCGGGAGCTGCAGGGTTCTGAGGAGGCGCCGAACCC
CGAGGAGGCGTTGCTGGCGACCGCCCTGGAGACAGGGCGTAGATCGTCGG
GGACAGCGTTTGCGAATCGCTGGCGCGAGATGCAGAACGTGCTCCAGTCC
AACGACCCAGAACAGCAAGCGTTCGATGCCGAGGTCGAGGACCACGGGTT
CCCCTGA
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