EsuBft901_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft901_2a-0001
Unique NameEsuBft901_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_20contigScaffold_20:1331700..1332312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft901_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length45
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft901_2aEsuBft901_2aEctocarpus subulatus male Bft15bgeneScaffold_20 1331700..1332312 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_2a-0001-exonagat-exon-61617Ectocarpus subulatus male Bft15bexonScaffold_20 1331700..1331757 +
EsuBft901_2a-0001-exonEsuBft901_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_20 1331917..1332312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_2a-0001-cdsEsuBft901_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_20 1331700..1331757 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_2a-0001-exonagat-three_prime_utr-22905Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_20 1332042..1332312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft901_2a-0001EsuBft901_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_20 1331700..1332041 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft901_2a-0001 ID=EsuBft901_2a-0001|Name=EsuBft901_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=454bp|location=Sequence derived from alignment at Scaffold_20:1331700..1332312+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGCCGCAGTAGAAACCACCCGATTCGGAAATGTGGGGGAAATGT
GTCACCAGACAACAACACGAAGAGCCGGAAAGGCGAAAGCCAGAGGACGG
GCTGCGGCTGCAAGGCTGGTGCTGCGTGCGTGGGCTCTGCAGCCCTGCGT
TGGAAGGTTGTTGTCATGCAAATACAGGGCTAGGAGAGACGAGGGGGGGG
GAGGAAACACTTCTTCGTTCATGTTGCGAGCATGGAAGGTAGCACCTTAC
TCTCCTCTCGTCGTGTGTTTGATTCTACTCTATTTGAATCGGATGGAACG
CACCAGCTTGTACACACATGCGTGGAGGTTCTAAGTTTGTTTTGGTTGAC
GTCAGCATGAGGTCGAGATTGTTTTGTTGGGGTGGTTCAACCTGCTAGAA
AACACCAACACGCTGGTTGTGGTTTCTGCGTGACTGTTGTGTCGGACTGA
CTGG
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protein sequence of EsuBft901_2a-0001

>EsuBft901_2 ID=EsuBft901_2|Name=EsuBft901_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=60bp
MGSRSRNHPIRKCGGNVSPDNNTKSRKGESQRTGCGCKAGAACVGSAALR
WKVVVMQIQG
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mRNA from alignment at Scaffold_20:1331700..1332312+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft901_2a-0001 ID=EsuBft901_2a-0001|Name=EsuBft901_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=613bp|location=Sequence derived from alignment at Scaffold_20:1331700..1332312+ (Ectocarpus subulatus male Bft15b)
ATGGGCAGCCGCAGTAGAAACCACCCGATTCGGAAATGTGGGGGAAATGT
GTCACCAGGTGTATTGCATCACTGACTACAGCAAGAGCGACGCAGATCCA
GGCGTGACGCGCGCTGCAGAGATGAACATGTTGGAGCTTGAGGAATATAT
GTTCCATGCAACCTAATATGTTTCAGTCGGTCTGCTGCCACTCCCCCACC
CTTCACCTGTGCGGCAGACAACAACACGAAGAGCCGGAAAGGCGAAAGCC
AGAGGACGGGCTGCGGCTGCAAGGCTGGTGCTGCGTGCGTGGGCTCTGCA
GCCCTGCGTTGGAAGGTTGTTGTCATGCAAATACAGGGCTAGGAGAGACG
AGGGGGGGGGAGGAAACACTTCTTCGTTCATGTTGCGAGCATGGAAGGTA
GCACCTTACTCTCCTCTCGTCGTGTGTTTGATTCTACTCTATTTGAATCG
GATGGAACGCACCAGCTTGTACACACATGCGTGGAGGTTCTAAGTTTGTT
TTGGTTGACGTCAGCATGAGGTCGAGATTGTTTTGTTGGGGTGGTTCAAC
CTGCTAGAAAACACCAACACGCTGGTTGTGGTTTCTGCGTGACTGTTGTG
TCGGACTGACTGG
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Coding sequence (CDS) from alignment at Scaffold_20:1331700..1332312+

>EsuBft901_2a-0001 ID=EsuBft901_2a-0001|Name=EsuBft901_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=183bp|location=Sequence derived from alignment at Scaffold_20:1331700..1332312+ (Ectocarpus subulatus male Bft15b)
ATGGGCAGCCGCAGTAGAAACCACCCGATTCGGAAATGTGGGGGAAATGT
GTCACCAGACAACAACACGAAGAGCCGGAAAGGCGAAAGCCAGAGGACGG
GCTGCGGCTGCAAGGCTGGTGCTGCGTGCGTGGGCTCTGCAGCCCTGCGT
TGGAAGGTTGTTGTCATGCAAATACAGGGCTAG
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