EsuBft900_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft900_7a-0001
Unique NameEsuBft900_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_464contigScaffold_464:9304..10569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft900_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length126
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft900_7aEsuBft900_7aEctocarpus subulatus male Bft15bgeneScaffold_464 9304..10569 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_7a-0001-exonEsuBft900_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_464 9304..10569 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_7a-0001-exonagat-three_prime_utr-22903Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_464 9304..10330 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_7a-0001-cdsEsuBft900_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_464 10331..10480 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_7a-0001-exonagat-five_prime_utr-14853Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_464 10481..10569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_7a-0001EsuBft900_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_464 10331..10480 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft900_7a-0001 ID=EsuBft900_7a-0001|Name=EsuBft900_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1266bp|location=Sequence derived from alignment at Scaffold_464:9304..10569- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTAAAGAACATACGCAAACATACAACGAGAAACAGGTAGAGTGTCCAAG
AGCCCGAAGAGGTACACCTAAAAATCCCTGCAGCACCGTATGCGTGCCCA
AAAACTGAACTGCACGTCCGTCCCACCGTTCGACTACAGTAGCATCACCC
CATCCCTGTCCCACTCTACGCCAAAACGGAAGATTGCCGACTACAGCATA
CTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCTGTC
TGAAGTGCTGTCAGAATGTGTCTGCGGACGTACAGTGAAAAAGAACAACC
AACCAAAGCCATCATAGCAGCAATTAATTGACAATGACCCGAATCTCTCC
CGATCGTCGGGGTTACCTAAAAGGGCCGTTTTAAACTGACCGACTTTTTG
TCAAAATGTTTGAAAGTGTCAAAAAAATGGAACCTGTATGTAGGCGTTTG
TCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCAGTGACGA
GTGACACAAAACCAACAACACGTAAAGTCAGAAAAAAAACGAAAAAAATT
GATTTAACACAGATAGAAATAAATGTTTGTCCGTGCGCCACGGGTCGATG
TCGCCCGCATGCTCCGGTGCCGCTGCTCCGTCCGGCGCCGCTGTAGTCAG
CCCGAGCATAACGCCACTCGACCTGCTCCCTCCGTACACGCTCTCGTTGC
TGTCCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTCAAGGTTC
TTGGTCTGAAAAATAAAAATTCTCGCGCCGAAGGGGTCAACCAGCCCAGT
TCAGCTCGTCGCCACCTGCTCCCTCCTCCTTTGATGGCGAAGCCAGGTTA
CTGAGGCAATACAGCTCCCTCTAGCAAACCTAGGGCCGTGTAGCGCCCGT
CCACCTTTCTGATGGTGTCTGCCTCCGCGCACAAAAATGAGATGGGCATC
ACTGCCTACACCGACGGCCAGAAAGGCCCGCGCATCTGCATTTTCCCGCC
CGACCCCATCAGCGCC
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protein sequence of EsuBft900_7a-0001

>EsuBft900_7 ID=EsuBft900_7|Name=EsuBft900_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MRAQKLNCTSVPPFDYSSITPSLSHSTPKRKIADYSILLXXXXXXXXXXX
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mRNA from alignment at Scaffold_464:9304..10569-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft900_7a-0001 ID=EsuBft900_7a-0001|Name=EsuBft900_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1266bp|location=Sequence derived from alignment at Scaffold_464:9304..10569- (Ectocarpus subulatus male Bft15b)
TCTAAAGAACATACGCAAACATACAACGAGAAACAGGTAGAGTGTCCAAG
AGCCCGAAGAGGTACACCTAAAAATCCCTGCAGCACCGTATGCGTGCCCA
AAAACTGAACTGCACGTCCGTCCCACCGTTCGACTACAGTAGCATCACCC
CATCCCTGTCCCACTCTACGCCAAAACGGAAGATTGCCGACTACAGCATA
CTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCTGTC
TGAAGTGCTGTCAGAATGTGTCTGCGGACGTACAGTGAAAAAGAACAACC
AACCAAAGCCATCATAGCAGCAATTAATTGACAATGACCCGAATCTCTCC
CGATCGTCGGGGTTACCTAAAAGGGCCGTTTTAAACTGACCGACTTTTTG
TCAAAATGTTTGAAAGTGTCAAAAAAATGGAACCTGTATGTAGGCGTTTG
TCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCAGTGACGA
GTGACACAAAACCAACAACACGTAAAGTCAGAAAAAAAACGAAAAAAATT
GATTTAACACAGATAGAAATAAATGTTTGTCCGTGCGCCACGGGTCGATG
TCGCCCGCATGCTCCGGTGCCGCTGCTCCGTCCGGCGCCGCTGTAGTCAG
CCCGAGCATAACGCCACTCGACCTGCTCCCTCCGTACACGCTCTCGTTGC
TGTCCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTCAAGGTTC
TTGGTCTGAAAAATAAAAATTCTCGCGCCGAAGGGGTCAACCAGCCCAGT
TCAGCTCGTCGCCACCTGCTCCCTCCTCCTTTGATGGCGAAGCCAGGTTA
CTGAGGCAATACAGCTCCCTCTAGCAAACCTAGGGCCGTGTAGCGCCCGT
CCACCTTTCTGATGGTGTCTGCCTCCGCGCACAAAAATGAGATGGGCATC
ACTGCCTACACCGACGGCCAGAAAGGCCCGCGCATCTGCATTTTCCCGCC
CGACCCCATCAGCGCC
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Coding sequence (CDS) from alignment at Scaffold_464:9304..10569-

>EsuBft900_7a-0001 ID=EsuBft900_7a-0001|Name=EsuBft900_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_464:9304..10569- (Ectocarpus subulatus male Bft15b)
ATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCGTTCGACTACAG
TAGCATCACCCCATCCCTGTCCCACTCTACGCCAAAACGGAAGATTGCCG
ACTACAGCATACTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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