EsuBft900_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft900_3a-0001
Unique NameEsuBft900_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_464contigScaffold_464:59788..61300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000367
ProteomeIdEsuBft900_3
Protein domainsSSF56672
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tf2-8 polyprotein os:schizosaccharomyces pombe (strain 972 atcc 24843) gn:tf2-8 pe:3 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length910
Hectar predicted targeting categoryother localisation
Evalue5.14e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,48B0V@7711|Chordata,499U9@7742|Vertebrata,4CK8P@8459|Testudines
Date last modified2016-06-14
Date creation2016-06-14
DescriptionK02A2.6-like
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft900_3aEsuBft900_3aEctocarpus subulatus male Bft15bgeneScaffold_464 59788..61300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_3a-0001EsuBft900_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_464 59806..60129 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_3a-0001-exonagat-exon-6879Ectocarpus subulatus male Bft15bexonScaffold_464 59788..60185 -
EsuBft900_3a-0001-exonagat-exon-6878Ectocarpus subulatus male Bft15bexonScaffold_464 60254..60276 -
EsuBft900_3a-0001-exonEsuBft900_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_464 60812..61300 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_3a-0001-exonagat-three_prime_utr-22899Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_464 59788..59805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_3a-0001-cdsEsuBft900_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_464 59806..60129 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_3a-0001-exonagat-five_prime_utr-14846Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_464 60130..60185 -
EsuBft900_3a-0001-exonagat-five_prime_utr-14847Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_464 60254..60276 -
EsuBft900_3a-0001-exonagat-five_prime_utr-14848Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_464 60812..61300 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft900_3a-0001 ID=EsuBft900_3a-0001|Name=EsuBft900_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=910bp|location=Sequence derived from alignment at Scaffold_464:59788..61300- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGGTACC
TTGATCTCGCTTTGCTGTTGCCTTTGTTTTTTGTACGGCTGGCTGTCTGC
CCATCTGCCGCCTCTTTGCCCTGTTTGCTCCGTTACTCCCATGCCCTGGT
GCGCAGTGCCTGGTGCTGGTACGTTACCCTTTGATTTTTTCTTTCGGCGG
GTGTGGGAAGCGTCCTCCTTTATTTTTTTGTTATTTTTGTTTTGTTTTAT
TTTGATCGGTGTCCGAGGGCTCTTTTCTCGAACGGTCGGTGCGATACCTG
TTCTTTTTTTTCGATCATTTTGTTTTCTTTTTCCGAGTGGTCTTACATTA
ATACCATCAAAGGTGAAGATCGGATAAAATCGAAACTAGGGTTGCCAACG
CCAACAAACATCAAAAGTATGCGATCAGTCCTAGGAACGGTCAACTATGC
CAGGAAATTCATCCCCGACTTAGCCGCCGTTACCGCACCAATGGTTGACC
TTACGAAGAAAGACGCAGTGAAGTCGGTAGCGAAACGCTGGGGTCCGAAA
CATGATGAAGCATTTGCCGAAGTGAAACGATTACTCACCAACGCTCCTGT
TTTGCGTTTTCCGGACTTCTCTAAAGAGTTTGCTATCCACGTAGACGCAT
CTGAAGTGGGAACAGGAACATTCCTGGCACAACAGAATGGCGATGACGTG
AATATCGTAGCATACTTTAGCCAGCGATTCAACAAAAGCTAACAACACCA
CTCTGCCACC
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protein sequence of EsuBft900_3a-0001

>EsuBft900_3 ID=EsuBft900_3|Name=EsuBft900_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=107bp
MRSVLGTVNYARKFIPDLAAVTAPMVDLTKKDAVKSVAKRWGPKHDEAFA
EVKRLLTNAPVLRFPDFSKEFAIHVDASEVGTGTFLAQQNGDDVNIVAYF
SQRFNKS
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mRNA from alignment at Scaffold_464:59788..61300-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft900_3a-0001 ID=EsuBft900_3a-0001|Name=EsuBft900_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1513bp|location=Sequence derived from alignment at Scaffold_464:59788..61300- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGGTACC
TTGATCTCGCTTTGCTGTTGCCTTTGTTTTTTGTACGGCTGGCTGTCTGC
CCATCTGCCGCCTCTTTGCCCTGTTTGCTCCGTTACTCCCATGCCCTGGT
GCGCAGTGCCTGGTGCTGGTACGTTACCCTTTGATTTTTTCTTTCGGCGG
GTGTGGGAAGCGTCCTCCTTTATTTTTTTGTTATTTTTGTTTTGTTTTAT
TTTGATCGGTGTCCGAGGGCTCTTTTCTCGAACGGTCGGTGCGATACCTG
TTCTTTTTTTTCGATCATTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCT
ATTTTTGTTTTTTTGTTTTCTCGCGGCGTCGTATGTGCCGGGTTTTGAGA
CCATGGGCTCCCCATTTTTTGTGGGCTATAAAGCTAATGTGAGAAACAAC
AACAACAACAAACTAGACCACCAGGGCGACCGTGTACACGATTACAGAGC
GACGATCAACAAGAATTTAATTCGTAAATCGTGGCCAATTCCTGAAATGG
CAAGTCATATTGACACAGTAGCAGGTGCTAAATATGATCATCACAGTCTG
CGATGTACAAAGTGCATACCACCAAATACCAATTGCCGAAGCAGAACAAG
ACAAGACTGCATTCGTTACTCGGGACGGAAAATGGGTTTTAAACGACTCC
CCTTTGGCATCGCCAATTCGCCTTTTCTGTTTCAACGTACAATGACATTG
ACTTTCGCACATTTTGGTCCAAAATCTGGTCTTGTGTACATGGATGATCG
TATTTGTTGTTCATCTACATGGGAGGGTCATATCTCGCTTTTGGAAAATA
CCTTTCAAGCGCTACAAGCCGCAGGTCTTACATTAATACCATCAAAGGTA
CAATTTGGGCCATAGGGAGGTGAAGTATTTGGGGCATATTCTTTCCGCAG
ATGGCATACGTTTAGGTGAAGATCGGATAAAATCGAAACTAGGGTTGCCA
ACGCCAACAAACATCAAAAGTATGCGATCAGTCCTAGGAACGGTCAACTA
TGCCAGGAAATTCATCCCCGACTTAGCCGCCGTTACCGCACCAATGGTTG
ACCTTACGAAGAAAGACGCAGTGAAGTCGGTAGCGAAACGCTGGGGTCCG
AAACATGATGAAGCATTTGCCGAAGTGAAACGATTACTCACCAACGCTCC
TGTTTTGCGTTTTCCGGACTTCTCTAAAGAGTTTGCTATCCACGTAGACG
CATCTGAAGTGGGAACAGGAACATTCCTGGCACAACAGAATGGCGATGAC
GTGAATATCGTAGCATACTTTAGCCAGCGATTCAACAAAAGCTAACAACA
CCACTCTGCCACC
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Coding sequence (CDS) from alignment at Scaffold_464:59788..61300-

>EsuBft900_3a-0001 ID=EsuBft900_3a-0001|Name=EsuBft900_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=324bp|location=Sequence derived from alignment at Scaffold_464:59788..61300- (Ectocarpus subulatus male Bft15b)
ATGCGATCAGTCCTAGGAACGGTCAACTATGCCAGGAAATTCATCCCCGA
CTTAGCCGCCGTTACCGCACCAATGGTTGACCTTACGAAGAAAGACGCAG
TGAAGTCGGTAGCGAAACGCTGGGGTCCGAAACATGATGAAGCATTTGCC
GAAGTGAAACGATTACTCACCAACGCTCCTGTTTTGCGTTTTCCGGACTT
CTCTAAAGAGTTTGCTATCCACGTAGACGCATCTGAAGTGGGAACAGGAA
CATTCCTGGCACAACAGAATGGCGATGACGTGAATATCGTAGCATACTTT
AGCCAGCGATTCAACAAAAGCTAA
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