EsuBft900_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft900_2a-0001
Unique NameEsuBft900_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_464contigScaffold_464:63997..66775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G4T0
ProteomeIdEsuBft900_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length171
Hectar predicted targeting categorysignal peptide
Evalue3.57e-31
EggNOG OGsKOG3706@1|root,KOG3706@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K16914
EC1.14.11.27
Descriptionhistone demethylase activity (H3-K4 specific)
COG categoryS
BRITEko00000,ko01000,ko03009,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft900_2aEsuBft900_2aEctocarpus subulatus male Bft15bgeneScaffold_464 63997..66775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_2a-0001EsuBft900_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_464 64812..66775 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_2a-0001-exonEsuBft900_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_464 63997..64447 -
EsuBft900_2a-0001-exonagat-exon-6877Ectocarpus subulatus male Bft15bexonScaffold_464 64692..65729 -
EsuBft900_2a-0001-exonagat-exon-6876Ectocarpus subulatus male Bft15bexonScaffold_464 66548..66775 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_2a-0001-exonagat-three_prime_utr-22897Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_464 63997..64447 -
EsuBft900_2a-0001-exonagat-three_prime_utr-22898Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_464 64692..64811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft900_2a-0001-cdsEsuBft900_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_464 64812..65729 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft900_2a-0001 ID=EsuBft900_2a-0001|Name=EsuBft900_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1717bp|location=Sequence derived from alignment at Scaffold_464:63997..66775- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATTCATCGGCTTCCTCTTGATTTTAGCCACTGCTGTTGCTGTGCA
AGTAGCGGGCGGCGAGGAGCACCTGGAGCTGCAAGAATGCTCTCCTTCCG
CAATAACCCAACTGCTGCCCATGGTGCATCCGCCGGTGCCTGAGACATCT
GTCACCCTGGTACGAGAGCTCATGGACCCCATCTCGCTGCAAGTCTTCGC
CGAGACGTTTTGGGAAAGAAAACCCATGGGGAAGAAAAAAGGGCGGAGGG
TCGCAACAACAGCAGCAACAGCGAAAAAGCTTAAGCAGCTGACGCCTAAA
CCGCCAGCAACGCCGCGTCCCGACGCTGCTGCCACCACGAACTACGGCTC
GGCTAAGCCCCAAGAGGGACAACCGAATCCTGCCCAAGCTGGGGAATCCG
CCGGTGCGGCTGCGAGCGTAGCACCCTCGCAGAGCAGTCACCATCGCGGA
TATTTCCACGCCCTGGTCGGTGACGATCGCGACAGCGACAACAACAGCAG
CGCTCGCGACGGCGCCAAGGCTGGTACCCAAACCCTCGACACCGACCCAT
CCCCTGACGACGACGATGACGATGACGACAACGCCGACGACGACCTTGCA
CACGACATCCTGCAGAACCGCGCCGACGCCGCCAGTCAGCAGAGTGCACC
GCTCCTGGCAAGCGGCGGGCCGCTGGAGGCCGTTCTCGTCAGCGCGGTCT
CAAAGGCAGTGGAGGCGGCGAAGGCCCCGCCGGCATGGGTCCTTAGCATG
CTTATGCCGGGAGCCGCTCACCAGGAAGACATCCAAAAGCTCCAAAGTAC
TGCGGACGACAACAAGGACCGCATCACTGCCATTGGAAACTATATTTCAG
GGCAGGAAGCGTTTGTGTCCAGTGGTGGAGCATACGGCGCGCAACGCGGT
GGGCGTGCTCAGCGGGGGACCGACAAACGTGATAATAAAGATAATTCCAA
ATCCCAGGGTCCTCCCGCGCGGGCGAAGGCGAAAGTATCCTTCGCTGGTA
CTGCCAAGCCCGACACCGCGAAACATAAGAAGGAATGTGACTTTATTGGT
TGTCGTTTCAGTAGCATTCGCCTTATGCACACTCGCGCGGAGTGCAAAAA
CGAACAAGCCGCTAAAAATGAGGGGTACACGTTTACGAAGAACTAGGGTC
GCCCGAGTAGGCAGCATCCCTCGGCCAACGTGGGACACCAATCATTTGGT
TTTGTCAAACTAGTACGTACAAACTGGGATAGACTGCAAAACACGAGCAA
GCAGAAGAGAGCCAGAGGATTCAAAACCCTGTAACAATGGTGTACGATCT
CTGGTGGGAACAACAAGAAAAGCAGTCAAAGAGCAGCGCTGTAGAAAGAT
AGTTGGAGTACATGTACCATGGGAACATTCTCGCGAAGGTTGTAGCAGCA
AGCAAACGCGAGGAGTCCCGAAGTCAAGTACCCGCACAATTGATGCAGTA
GCCGCTGTAGATCCAGCACTAGGGGATAGCACCCAAGTAAGGCAAAGTAG
CCGCCTTTTTAGCGCCGCAAGCCTTGCACGTAGCTACCGTAGCTGGGGAC
TTCAGGTTGAAACATAGGTCTAACCTAATGAGAACTGACCGTAATGAAGA
ATTCATGCTTTTTACATGTCTGCACTCGCTGGATATCCCGTGTGTCCATC
GGTATTGCGATCGACATCCAAGCGAGTACGTGTACCCGCCAGAATAAGCA
ATGAATCGGTTGATGAA
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protein sequence of EsuBft900_2a-0001

>EsuBft900_2 ID=EsuBft900_2|Name=EsuBft900_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=381bp
MGFIGFLLILATAVAVQVAGGEEHLELQECSPSAITQLLPMVHPPVPETS
VTLVRELMDPISLQVFAETFWERKPMGKKKGRRVATTAATAKKLKQLTPK
PPATPRPDAAATTNYGSAKPQEGQPNPAQAGESAGAAASVAPSQSSHHRG
YFHALVGDDRDSDNNSSARDGAKAGTQTLDTDPSPDDDDDDDDNADDDLA
HDILQNRADAASQQSAPLLASGGPLEAVLVSAVSKAVEAAKAPPAWVLSM
LMPGAAHQEDIQKLQSTADDNKDRITAIGNYISGQEAFVSSGGAYGAQRG
GRAQRGTDKRDNKDNSKSQGPPARAKAKVSFAGTAKPDTAKHKKECDFIG
CRFSSIRLMHTRAECKNEQAAKNEGYTFTKN
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mRNA from alignment at Scaffold_464:63997..66775-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft900_2a-0001 ID=EsuBft900_2a-0001|Name=EsuBft900_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2779bp|location=Sequence derived from alignment at Scaffold_464:63997..66775- (Ectocarpus subulatus male Bft15b)
ATGGGATTCATCGGCTTCCTCTTGATTTTAGCCACTGCTGTTGCTGTGCA
AGTAGCGGGCGGCGAGGAGCACCTGGAGCTGCAAGAATGCTCTCCTTCCG
CAATAACCCAACTGCTGCCCATGGTGCATCCGCCGGTGCCTGAGACATCT
GTCACCCTGGTACGAGAGCTCATGGACCCCATCTCGCTGCAAGTCTTCGC
CGAGACGTTTTGGGAAAGAAAACCCATGGTAATTCGAGGAAGGTGTGTGT
GGGTGAGAGTAAGGGTGAGACTGCTGTTGGTGAAGTTTTGCGCGGAGGGA
CTGCTGTTCCTACTATCCTATCATCTACTACAGCATACTCTACTACTAGT
ATTATATTGTCCAATAGCATAAAAGCTGTGCTATCTACATACGACGGTGT
CTACATGTACCAGGTACTGCTGTACAGCAATAAGCAGCTCGATATAGTGG
CAACTTGAACAGCAGTAGTGGAACTGCCGGTGTAGTGGCATCAAAATCTC
AAAAAAATCTCTCGTCACAATCTCAACGCGATATGCATCGTGGCATTTTA
TGTACCACTAGATAATACCTGTTGCAGCTAAGGACGCTGCCCTCAATACA
AAAAATAGTAGCGGTAGCAGTTTTTTGGGAATCTCACATCGCCAATATTG
TGGAGGTCAGGATATGGAGATTCAGGGAGCACAGATACACGTACATAAAG
GGTAGGATCTGAGGGAATATGTGATCATAGATTACTGTTCTCCGAGGGTC
ATGACCCTCAACGGCTGCGAAGAGTTGATGGATCTTTAGGAGAATGGGAA
AATGGGTCCACGAAGGCTCGCCCACTCTCCGTACCACCCTAGCTTGACTG
AGTTCGCTCGGTCACGCTTGGCATTCCTCGCCACATTGCACCATAGGAAA
GAGCCAACCTCCGGTGGCAGGACATAGCCACCACAACCCCGGACTCTCCG
CTCACCCAGAGTAGAGGGCTTCCATATTGGCGTTCGACGAAGTGTTCTAT
CTATGCAACCCACGTGTGAAACATGGGCTCCAATTTATGGAAGCAGGGGA
AGAAAAAAGGGCGGAGGGTCGCAACAACAGCAGCAACAGCGAAAAAGCTT
AAGCAGCTGACGCCTAAACCGCCAGCAACGCCGCGTCCCGACGCTGCTGC
CACCACGAACTACGGCTCGGCTAAGCCCCAAGAGGGACAACCGAATCCTG
CCCAAGCTGGGGAATCCGCCGGTGCGGCTGCGAGCGTAGCACCCTCGCAG
AGCAGTCACCATCGCGGATATTTCCACGCCCTGGTCGGTGACGATCGCGA
CAGCGACAACAACAGCAGCGCTCGCGACGGCGCCAAGGCTGGTACCCAAA
CCCTCGACACCGACCCATCCCCTGACGACGACGATGACGATGACGACAAC
GCCGACGACGACCTTGCACACGACATCCTGCAGAACCGCGCCGACGCCGC
CAGTCAGCAGAGTGCACCGCTCCTGGCAAGCGGCGGGCCGCTGGAGGCCG
TTCTCGTCAGCGCGGTCTCAAAGGCAGTGGAGGCGGCGAAGGCCCCGCCG
GCATGGGTCCTTAGCATGCTTATGCCGGGAGCCGCTCACCAGGAAGACAT
CCAAAAGCTCCAAAGTACTGCGGACGACAACAAGGACCGCATCACTGCCA
TTGGAAACTATATTTCAGGGCAGGAAGCGTTTGTGTCCAGTGGTGGAGCA
TACGGCGCGCAACGCGGTGGGCGTGCTCAGCGGGGGACCGACAAACGTGA
TAATAAAGATAATTCCAAATCCCAGGGTCCTCCCGCGCGGGCGAAGGCGA
AAGTATCCTTCGCTGGTACTGCCAAGCCCGACACCGCGAAACATAAGAAG
GAATGTGACTTTATTGGTTGTCGTTTCAGTAGCATTCGCCTTATGCACAC
TCGCGCGGAGTGCAAAAACGAACAAGCCGCTAAAAATGAGGGGTACACGT
TTACGAAGAACTAGGGTCGCCCGAGTAGGCAGCATCCCTCGGCCAACGTG
GGACACCAATCATTTGGTTTTGTCAAACTAGTACGTACAAACTGGGATAG
ACTGCAAAACACGAGCAAGCAGAAGAGAGCCAGAGTAGATGAGAGGGATT
CAAAACCCTGTAACAATGGTGTACGATCTCTGGTGGGAACAACAAGAAAA
GCAGTCAAAGAGCAGCGCTGTAGAAAGATAGTTGGAGTACATGTACCATG
GGNCCGAGTAGGCAGCATCCCTCGGCCAACGTGGGACACCAATCATTTGG
TTTTGTCAAACTAGTACGTACAAACTGGGATAGACTGCAAAACACGAGCA
AGCAGAAGAGAGCCAGAGTAGATGAGAGGGATTCAAAACCCTGTAACAAT
GGTGTACGATCTCTGGTGGGAACAACAAGAAAAGCAGTCAAAGAGCAGCG
CTGTAGAAAGATAGTTGGAGTACATGTACCATGGGAACATTCTCGCGAAG
GTTGTAGCAGCAAGCAAACGCGAGGAGTCCCGAAGTCAAGTACCCGCACA
ATTGATGCAGTAGCCGCTGTAGATCCAGCACTAGGGGATAGCACCCAAGT
AAGGCAAAGTAGCCGCCTTTTTAGCGCCGCAAGCCTTGCACGTAGCTACC
GTAGCTGGGGACTTCAGGTTGAAACATAGGTCTAACCTAATGAGAACTGA
CCGTAATGAAGAATTCATGCTTTTTACATGTCTGCACTCGCTGGATATCC
CGTGTGTCCATCGGTATTGCGATCGACATCCAAGCGAGTACGTGTACCCG
CCAGAATAAGCAATGAATCGGTTGATGAA
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Coding sequence (CDS) from alignment at Scaffold_464:63997..66775-

>EsuBft900_2a-0001 ID=EsuBft900_2a-0001|Name=EsuBft900_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1146bp|location=Sequence derived from alignment at Scaffold_464:63997..66775- (Ectocarpus subulatus male Bft15b)
ATGGGATTCATCGGCTTCCTCTTGATTTTAGCCACTGCTGTTGCTGTGCA
AGTAGCGGGCGGCGAGGAGCACCTGGAGCTGCAAGAATGCTCTCCTTCCG
CAATAACCCAACTGCTGCCCATGGTGCATCCGCCGGTGCCTGAGACATCT
GTCACCCTGGTACGAGAGCTCATGGACCCCATCTCGCTGCAAGTCTTCGC
CGAGACGTTTTGGGAAAGAAAACCCATGGGGAAGAAAAAAGGGCGGAGGG
TCGCAACAACAGCAGCAACAGCGAAAAAGCTTAAGCAGCTGACGCCTAAA
CCGCCAGCAACGCCGCGTCCCGACGCTGCTGCCACCACGAACTACGGCTC
GGCTAAGCCCCAAGAGGGACAACCGAATCCTGCCCAAGCTGGGGAATCCG
CCGGTGCGGCTGCGAGCGTAGCACCCTCGCAGAGCAGTCACCATCGCGGA
TATTTCCACGCCCTGGTCGGTGACGATCGCGACAGCGACAACAACAGCAG
CGCTCGCGACGGCGCCAAGGCTGGTACCCAAACCCTCGACACCGACCCAT
CCCCTGACGACGACGATGACGATGACGACAACGCCGACGACGACCTTGCA
CACGACATCCTGCAGAACCGCGCCGACGCCGCCAGTCAGCAGAGTGCACC
GCTCCTGGCAAGCGGCGGGCCGCTGGAGGCCGTTCTCGTCAGCGCGGTCT
CAAAGGCAGTGGAGGCGGCGAAGGCCCCGCCGGCATGGGTCCTTAGCATG
CTTATGCCGGGAGCCGCTCACCAGGAAGACATCCAAAAGCTCCAAAGTAC
TGCGGACGACAACAAGGACCGCATCACTGCCATTGGAAACTATATTTCAG
GGCAGGAAGCGTTTGTGTCCAGTGGTGGAGCATACGGCGCGCAACGCGGT
GGGCGTGCTCAGCGGGGGACCGACAAACGTGATAATAAAGATAATTCCAA
ATCCCAGGGTCCTCCCGCGCGGGCGAAGGCGAAAGTATCCTTCGCTGGTA
CTGCCAAGCCCGACACCGCGAAACATAAGAAGGAATGTGACTTTATTGGT
TGTCGTTTCAGTAGCATTCGCCTTATGCACACTCGCGCGGAGTGCAAAAA
CGAACAAGCCGCTAAAAATGAGGGGTACACGTTTACGAAGAACTAG
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