EsuBft89_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft89_7a-0001
Unique NameEsuBft89_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_601contigScaffold_601:262523..265934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft89_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length219
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft89_7aEsuBft89_7aEctocarpus subulatus male Bft15bgeneScaffold_601 262523..265934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_7a-0001EsuBft89_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_601 262523..264487 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_7a-0001-exonEsuBft89_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_601 262523..262732 +
EsuBft89_7a-0001-exonagat-exon-15227Ectocarpus subulatus male Bft15bexonScaffold_601 262831..263121 +
EsuBft89_7a-0001-exonagat-exon-15228Ectocarpus subulatus male Bft15bexonScaffold_601 263685..263797 +
EsuBft89_7a-0001-exonagat-exon-15229Ectocarpus subulatus male Bft15bexonScaffold_601 264358..265934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_7a-0001-cdsEsuBft89_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_601 262523..262732 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_7a-0001-exonagat-three_prime_utr-22894Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_601 264488..265934 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft89_7a-0001 ID=EsuBft89_7a-0001|Name=EsuBft89_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2191bp|location=Sequence derived from alignment at Scaffold_601:262523..265934+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGCACGTCCTTCATGGCGGCCACGAAACACAGACTACGTTGGCT
GCGACCGGTCGGGTGCGAGTTCCTCTCCAGGAAGAAAGCAAGCATTCCGG
AGGGCAACCGCCTCAAACGCCCAAGAGCCAGCGCCGGCGCCGGCGTCAGC
GGTGGTGGCCGTGGCGAGGAAGGCATGCCAAAGGGCCGAGCGGGAGCCAG
CCGCCTCCAGGGTAACACCGGCACAGGTGGGAACGCCAGAGTGTGCCCGA
CCAACGAGGACGACGACGATGACAATGCTATTGCTGTCAGCCCGATCGTT
GTGGGACCGGAGTCACCGCCGAGCCAGGCGGGGGAAAAAGACCGAGGTGA
CGATCTCGATGGAGAAGGAGGGGACGCGTGCATCGGCGGCGAAGAAGATG
ACGGGCGTGAAAGCGATGATCACGGCAGCGATGGACAGTTTTCGGTGGAT
ATGGACATAGTGGATGATGTCACCAACGACGAGGGTTTCGAGCTGGGCGA
GATGGAGATTCTTCTGGCGGCGGTAAAGGCTCGACAGACGCTTGCCGCTA
AAGCTGCCAGCCTTGGACGGCTTTTGGCACGCAGAGCCCTTCCGACCTCA
TTCACCGACACCAGGGATGCCCACATGCTTCTGATGAGCCGCGCGCGCAG
CGCTGGAAGAGAAAAAGCCATGCGCAAGTTCGAAAACCTGCTGACCGTCG
AGACAGGCGACTTGTTCGCGGCGGCAACTCATCATCACGAGTAGCAGCAA
CAACGTGTCTTGTACTTTCGCTAGCACTAAAACATGTTTGAATCATGTGC
ATTCGAGAATTTGTCGTACTTGCCCAGCACCATGTGGTTTCGAGTGTCTC
GACGTGTGTCCGCTGTAGTAACCGAGTAATGATGGTCACAGTCTTCTATT
TAGTGGGGGAACAACGATATTGCAAATCGCTGGACACGGCTTCAACACAG
GTTTCGCAGTTGTCAACCACTACACATAAGCAACTCTTTTTTTGTGTTGG
TTGTGCCGACTGCACGCGCCCCCCTCCCAAAAATCGCTTCGTTCGACATC
AAATAATGTTTCAAAGAAAAAAAACTATTCCTTCCAGATCCGGTTCCTCT
AAGGCGGTCTCTAGACTAGAGATCTCACAGAATGGTACAAAAATGTGAAT
GACTGATCACTTTTTTTTATTTTTTTCTTAATATGACACAACGAGTCCAT
CTCTATCATAGAAAAGAGTCAGAGACAGATTAACAATGGAATCATAGCGT
CAGAGGAAACTACCTGTGTGTCTACGATTTCCCAGACAGCATATAGGGAC
ATCTCCCCTGTAGGTAACAGGCTCAACAAATCAGTTTGGCAGCTGTCTTG
TGTGTCTCATATATGTTATGTTGGGAAGGTGCAGACGAAACGTGTTGGGT
ACTGTTGGGTAGTCGGGCGTTTTGTGTGTCGCACCCTATTAGTTGTAGTA
CATGCAATCTCCATCAGTTTACAAACATATTCTCAGTTTGGTATGCATAT
GTGCGGAGTATGTGCGGCTGATGTGCCATCTCTATCATAGAAAAGAGTCA
GAGACAGATTAACAATGGAATCATAGGGTCAGAGAAAACTACCTGTATGT
CTACGATTTCCTAGACAGCATATAGGGACAACTCTCGGGTGACAGGCTCA
AAAGATCAGTTTGGTAGCTGTCTTGTGTGTCTCATATATGTTATGTTGTG
GAATTTCATGTTAAATGTGAGAAGGGCACGGGAGAACATTTCTCATCATT
GCCTCCTGATGACGTGGTCGCCGATAGAGGCGTGTGGTTGATGAGGTTTC
ATAACCGACATGTGGGTGTGTGTTAAATGCAGTGGGTGTGTTCACCTCTC
TCGTCCGTGTGTAGGCAGGAGGTATGGTTACCTCTCCCATTTGTAGGCAG
CGTGGACCATACTTGTAACTATAGACAGAGTTCATCATTTCATGCATGTT
ACATCATTTGTGTTTGACAAGGGAGGAATGAGAGGTTGTGCGTATGGGTA
CGGGGGTACTCCCTGTGTCCGTGTTGTTCCCAGATGTTGCCGCATCAAGT
GGCAGCATGTGTCATGGACAGGTAGACGTGGAAGGACGGCGACAGGTGAA
CGGCAGCAGTAGTATGTTGTGCATGGTGGCATGTTGGGCTTGTGCAGAGG
CGCAGTCCATCTTCGACCACACACAAAAAAGTTTGCTCGTA
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protein sequence of EsuBft89_7a-0001

>EsuBft89_7 ID=EsuBft89_7|Name=EsuBft89_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=247bp
MDGTSFMAATKHRLRWLRPVGCEFLSRKKASIPEGNRLKRPRASAGAGVS
GGGRGEEGMPKGRAGASRLQGNTGTGGNARVCPTNEDDDDDNAIAVSPIV
VGPESPPSQAGEKDRGDDLDGEGGDACIGGEEDDGRESDDHGSDGQFSVD
MDIVDDVTNDEGFELGEMEILLAAVKARQTLAAKAASLGRLLARRALPTS
FTDTRDAHMLLMSRARSAGREKAMRKFENLLTVETGDLFAAATHHHE
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mRNA from alignment at Scaffold_601:262523..265934+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft89_7a-0001 ID=EsuBft89_7a-0001|Name=EsuBft89_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3412bp|location=Sequence derived from alignment at Scaffold_601:262523..265934+ (Ectocarpus subulatus male Bft15b)
ATGGACGGCACGTCCTTCATGGCGGCCACGAAACACAGACTACGTTGGCT
GCGACCGGTCGGGTGCGAGTTCCTCTCCAGGAAGAAAGCAAGCATTCCGG
AGGGCAACCGCCTCAAACGCCCAAGAGCCAGCGCCGGCGCCGGCGTCAGC
GGTGGTGGCCGTGGCGAGGAAGGCATGCCAAAGGGCCGAGCGGGAGCCAG
CCGCCTCCAGGTAGACAAGGGACACCACTGCCGAGGCTTCCGCGGAAAGC
GGCATCAAGATTCCTGAAGATCGGCGGCGGCGCTGGTCCTGGCGGGGCAA
AGAAGCAGGGTAACACCGGCACAGGTGGGAACGCCAGAGTGTGCCCGACC
AACGAGGACGACGACGATGACAATGCTATTGCTGTCAGCCCGATCGTTGT
GGGACCGGAGTCACCGCCGAGCCAGGCGGGGGAAAAAGACCGAGGTGACG
ATCTCGATGGAGAAGGAGGGGACGCGTGCATCGGCGGCGAAGAAGATGAC
GGGCGTGAAAGCGATGATCACGGCAGCGATGGACAGTTTTCGGTGGATAT
GGACATAGTGGATGATGTCACCAACGACGAGGGTTTCGAGCTGGGCGAGG
TGTGTTCGGTCCTGGCGGGGAGTTAGCGTAGAGGGGGTGGTGTGAAACGA
GACCTGTTTACCTGATAGTGAAGCATCTCAGTTCGAGCTTGTTGTCCGCA
TGACTATTGCCGTCGTCACGTGTGGGTCACATGTCATTTGGTCTCGACAA
CAACCGAGAGGTGTCTCTTTTGGCCATCCCATTACCCGCCCGTCGGACGT
CAACTTAAGTGAGAGTCCCACCAAGACACGTGAAAAAATGCCGAGGGTTC
AGTTACTTGATGGTGATGATCCGGTCGGCCTTCATCGTCGCAAAAACTGG
CAATGGCCACTTTTGAAATGGGAAGAAGGCCGGTTTTTTCGATTAGCACA
TACCCTTGGCCCTTGACGTTGATTACCAGCCGTAGGCTTTGCCTTCAGCA
CAAAAAGCGTAAGAAAAAAATCAGATCTTCATTCTGTGCACGTAATCTGT
TCTGCGTGTTCTCGGAGGAACGATTCGATCGCGGCCGTGATTTGACGCCC
CGATTGCTCCGCTTTCTCTGCCCTGCGCAAACTCGATTTCCGGCGTTCTC
GAACCATTAAAGATGGAGATTCTTCTGGCGGCGGTAAAGGCTCGACAGAC
GCTTGCCGCTAAAGCTGCCAGCCTTGGACGGCTTTTGGCACGCAGAGCCC
TTCCGACCTCATTCACCGACACCAGGTAACCTCTGCGAGAAGTCGGCCGC
AGGACAGCAGTGCCCGAGTCCGCTGCACAACTACAATAGTCGAATATATT
CGGATGCAGGTCACGTTTTAGGCACCTCGGTAGACACCTCAAACCACCTC
GTCCTTCGCGCAGTGTGATCGTCGCCAGTGAAGCCCTGGTGTGCGTTTCT
GTGTCAGGTTTTGTTGATATGCAAGGTCTGGTCGAAAATATGACGGGGGG
TTCATTCGTGAATACGATAGTCTATGAATACACCCTCCCCAGGTTGTGTT
GTTCGCTTGTGCTTCCTTTCTCGGCAGACTTGGCCTTTGGGATGATAGTT
GGCTCTGTTTATTGAATACATGCCGAAATATGGGTAGTCCTCTCATCGCG
TGCCGTCGCGTTCATTAACGTTCTCGGTCGCCCTGCCGGAAGCAATGGAT
TGAAACGTGAGAGGTACAGAACATTTTCCGGTCTTGCGTGACCTAGCGCC
TTGCAGATAGGCCAATGCGGGTGTGTAGCCACCCATCCCCGTCGTCTTGT
ACCCAACCTTGCCTGTTTGCCTTCCATGGTGACAGGGATGCCCACATGCT
TCTGATGAGCCGCGCGCGCAGCGCTGGAAGAGAAAAAGCCATGCGCAAGT
TCGAAAACCTGCTGACCGTCGAGACAGGCGACTTGTTCGCGGCGGCAACT
CATCATCACGAGTAGCAGCAACAACGTGTCTTGTACTTTCGCTAGCACTA
AAACATGTTTGAATCATGTGCATTCGAGAATTTGTCGTACTTGCCCAGCA
CCATGTGGTTTCGAGTGTCTCGACGTGTGTCCGCTGTAGTAACCGAGTAA
TGATGGTCACAGTCTTCTATTTAGTGGGGGAACAACGATATTGCAAATCG
CTGGACACGGCTTCAACACAGGTTTCGCAGTTGTCAACCACTACACATAA
GCAACTCTTTTTTTGTGTTGGTTGTGCCGACTGCACGCGCCCCCCTCCCA
AAAATCGCTTCGTTCGACATCAAATAATGTTTCAAAGAAAAAAAACTATT
CCTTCCAGATCCGGTTCCTCTAAGGCGGTCTCTAGACTAGAGATCTCACA
GAATGGTACAAAAATGTGAATGACTGATCACTTTTTTTTATTTTTTTCTT
AATATGACACAACGAGTCCATCTCTATCATAGAAAAGAGTCAGAGACAGA
TTAACAATGGAATCATAGCGTCAGAGGAAACTACCTGTGTGTCTACGATT
TCCCAGACAGCATATAGGGACATCTCCCCTGTAGGTAACAGGCTCAACAA
ATCAGTTTGGCAGCTGTCTTGTGTGTCTCATATATGTTATGTTGGGAAGG
TGCAGACGAAACGTGTTGGGTACTGTTGGGTAGTCGGGCGTTTTGTGTGT
CGCACCCTATTAGTTGTAGTACATGCAATCTCCATCAGTTTACAAACATA
TTCTCAGTTTGGTATGCATATGTGCGGAGTATGTGCGGCTGATGTGCCAT
CTCTATCATAGAAAAGAGTCAGAGACAGATTAACAATGGAATCATAGGGT
CAGAGAAAACTACCTGTATGTCTACGATTTCCTAGACAGCATATAGGGAC
AACTCTCGGGTGACAGGCTCAAAAGATCAGTTTGGTAGCTGTCTTGTGTG
TCTCATATATGTTATGTTGTGGAATTTCATGTTAAATGTGAGAAGGGCAC
GGGAGAACATTTCTCATCATTGCCTCCTGATGACGTGGTCGCCGATAGAG
GCGTGTGGTTGATGAGGTTTCATAACCGACATGTGGGTGTGTGTTAAATG
CAGTGGGTGTGTTCACCTCTCTCGTCCGTGTGTAGGCAGGAGGTATGGTT
ACCTCTCCCATTTGTAGGCAGCGTGGACCATACTTGTAACTATAGACAGA
GTTCATCATTTCATGCATGTTACATCATTTGTGTTTGACAAGGGAGGAAT
GAGAGGTTGTGCGTATGGGTACGGGGGTACTCCCTGTGTCCGTGTTGTTC
CCAGATGTTGCCGCATCAAGTGGCAGCATGTGTCATGGACAGGTAGACGT
GGAAGGACGGCGACAGGTGAACGGCAGCAGTAGTATGTTGTGCATGGTGG
CATGTTGGGCTTGTGCAGAGGCGCAGTCCATCTTCGACCACACACAAAAA
AGTTTGCTCGTA
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Coding sequence (CDS) from alignment at Scaffold_601:262523..265934+

>EsuBft89_7a-0001 ID=EsuBft89_7a-0001|Name=EsuBft89_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=744bp|location=Sequence derived from alignment at Scaffold_601:262523..265934+ (Ectocarpus subulatus male Bft15b)
ATGGACGGCACGTCCTTCATGGCGGCCACGAAACACAGACTACGTTGGCT
GCGACCGGTCGGGTGCGAGTTCCTCTCCAGGAAGAAAGCAAGCATTCCGG
AGGGCAACCGCCTCAAACGCCCAAGAGCCAGCGCCGGCGCCGGCGTCAGC
GGTGGTGGCCGTGGCGAGGAAGGCATGCCAAAGGGCCGAGCGGGAGCCAG
CCGCCTCCAGGGTAACACCGGCACAGGTGGGAACGCCAGAGTGTGCCCGA
CCAACGAGGACGACGACGATGACAATGCTATTGCTGTCAGCCCGATCGTT
GTGGGACCGGAGTCACCGCCGAGCCAGGCGGGGGAAAAAGACCGAGGTGA
CGATCTCGATGGAGAAGGAGGGGACGCGTGCATCGGCGGCGAAGAAGATG
ACGGGCGTGAAAGCGATGATCACGGCAGCGATGGACAGTTTTCGGTGGAT
ATGGACATAGTGGATGATGTCACCAACGACGAGGGTTTCGAGCTGGGCGA
GATGGAGATTCTTCTGGCGGCGGTAAAGGCTCGACAGACGCTTGCCGCTA
AAGCTGCCAGCCTTGGACGGCTTTTGGCACGCAGAGCCCTTCCGACCTCA
TTCACCGACACCAGGGATGCCCACATGCTTCTGATGAGCCGCGCGCGCAG
CGCTGGAAGAGAAAAAGCCATGCGCAAGTTCGAAAACCTGCTGACCGTCG
AGACAGGCGACTTGTTCGCGGCGGCAACTCATCATCACGAGTAG
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