EsuBft89_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft89_2a-0001
Unique NameEsuBft89_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_601contigScaffold_601:166263..170402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft89_2
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length346
Hectar predicted targeting categoryother localisation
Evalue7.06e-18
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-13
Date creation2016-06-13
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft89_2aEsuBft89_2aEctocarpus subulatus male Bft15bgeneScaffold_601 166263..170402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_2a-0001EsuBft89_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_601 169581..170402 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_2a-0001-exonEsuBft89_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_601 166263..167870 -
EsuBft89_2a-0001-exonagat-exon-15195Ectocarpus subulatus male Bft15bexonScaffold_601 168363..168634 -
EsuBft89_2a-0001-exonagat-exon-15194Ectocarpus subulatus male Bft15bexonScaffold_601 168822..170402 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_2a-0001-exonagat-three_prime_utr-22887Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_601 166263..167870 -
EsuBft89_2a-0001-exonagat-three_prime_utr-22888Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_601 168363..168634 -
EsuBft89_2a-0001-exonagat-three_prime_utr-22889Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_601 168822..169580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_2a-0001-cdsEsuBft89_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_601 169581..170402 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft89_2a-0001 ID=EsuBft89_2a-0001|Name=EsuBft89_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3461bp|location=Sequence derived from alignment at Scaffold_601:166263..170402- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAA
GCGGGGGGAGGGAAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTATG
GGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGTCTGCA
GAAGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTT
CGGGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCAGATGCGCGCTA
AGGACAAGTCGACTACAACATCACAGCCCGACCCGCCTCCACCACTGACC
ATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCT
CGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACA
GGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCTGGGAGCTCTTC
GACAGACCGAATGCGCCATTCCGACTCAAGATTCGCCTGCTCCAGGCGGA
GGCGATGGAGGCACTGCTATACGGTTGCATGACATGGTCACCACTCAGCG
GCCACTATCAGACGCTGCGGTCGATACACCACCGACTGCTCCTTCGAGTT
ATCGGGTACAAGCGCAAGAAAGACACCTACCGGCAGCTCTCTTACGCCCA
GACGCTGAAGAGGGTCCAATGTCAGAGCGTTGAAGCCACGATCCGACAAC
GACGCCTACTGATCGCGGGAGCGTTGGCAACGCAGCCGGACGGGCGACTC
CCGAAACGACTGATGTTCGGCGAACTGGCAGGGGGGGAGAAGCGACGTAG
GGGGGAACAGGAGCAGAACTAACCGAAGTGTGTGCTCGACGAGCTGAAGG
CATTCGGGGCCGACCACGGATCTACGAAAACCGATCCATGTTGTTTCGGA
AGCCCGGTACCGAAAGACACGGCACCGAAGTTAAAGTGGACGGAAGCCGC
CAAGGTAGAGGGGGGAGTACCCTGGCATGCGGCGGTGCTGCAGGGAGCTG
AGAGGTTCATGACCTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACGCTGC
ACCATTGCACCAGCCCCCCACTAATGATGACGTACCATTACAATGTATCG
CTGGTTGGTGGCCATGTTTGCGTGTTTGCTTGTCGCTAGTGGTTTCTCCA
CCGCGTGCCTTTTTCTTTGTCTTATTTCTTGTTATTTTTGGCCTGGTCCC
TTTTTGTCCTCGCTCTTTTTATTTAATTTTCTCTTTCCTTACAAGTGGCC
TAATTACTGTTTCCTATTATTTTCTTCTCTTTTACTCTTGTTCTCTTTTT
CGCTCATTTTCTGCGCCAGATGGCCTTGTTTCTGCTTGCGTTGTGAAGTA
CCAAGATTGAACCAAGGGGGTGTACCTCATTCTCTCCGGCCCGTGATGGT
GACCCCTAGTGTCAGTTGTTACCTCGCATAGCGCGCAGAGGGAGTGGAGA
ACTCCAGAATATCTGGCGTTGATTTCTATTGACTTGCGGACCCCTCGGGG
CCATTTCATTTGAGTGTGGTACCGTTTTAGGGGCGCGTTAATACCCCAGT
ACTTGTGCGAGTTTCCGTGCACAAGTTAAAAACGCCTCCAGAACCATCCT
TTACATAACCTGTACAGAACCTTTGCAGAACCCACTTTGAAATCCCCACG
GCCCGCACAACACACCACCGCGCACCGCACGCACCGGCGACGGCTCTGAT
GGCCACACAGGAGACACACACGCAAGACGCCGTATGGATATCGTTCTTGC
AGACGCGGTTGCATCACATGGCACCGGAATCACCGCAGGCGCCTCTGTGG
AAAGAGATGACGGCGGCGCCTCACAGGAAGACACGCCGAAGCTCGTGGCT
TGTTGCTTTCCGGAAGACGAGGAGATTGCGGACAGGGCTAAGGCGAATGA
GTTGGCCACGGCACGCGTGAAAGCTGCGCTACAGGATAGAGAGTTGGAAA
TGTTGGGGCCTCTGACAAGATTTGTGACGATCCAACGTGCGTGGTTGGAC
GACAGTTGCTACGAGTACGCGAGGAGTGGTGATGGGGTCATGTTGGCAGG
CCTGCAGGAGTATGTGGCCGGAGACGACAACCGCTATGTCCTGTACAACA
CAGATAGTAGTGCATGCTGCAGCGCAAGGTCATTTCGACGTGGTGTCTCA
GGGCTCGGGTTGGCACTGGACCTCTCAAGGGTTTGGAGGCAGCCGACGCA
ACGGGGGTTTGGAAATGCTGCGGTGGTGTCGAAGCGCTGCGGCGTGGTTA
CTGCGGACTTCTGTAGTCAATGCTTTGATGTGGAAGGGTGGGGGCGTGTA
ATTGAGCATGCCGCGGGTGCTGGGCATGTGGAGATGGTCCTGTGGTGCCT
CGAGAATGGATGGGAATACACTGGATGGGAATATAGTGAGGCTATTATGC
AGTCGGCTGCTAGCGAGGGACGTTGGGATGTCGTGAGGGCGCTGGAGAAG
AGGGCGTTGGTGGAGAGGGGGTACACATGGGTGGGGGAGATTGGCGAAAG
TGCCCGAGCGTACGACGAGGGAGTCATGATTTGGGACAAGGAAACACACC
ACCCTGTGAGTGATGTTTTTTTGGTCATTTCCAGTCGGTGCATCATGTTT
TTTTGGGAAGGGGGGTTGGTGCCGCTTGCATGGCGTTTGTGGTGGTTGTG
CTTCGTGGTAATGTTGTCCGAAGGCATAGGGGCAGCTGGAGTTGACTGCG
CGGCGGCTGGGCCGCGTTCGACGCGGGGGCGGGCAGGCGGCTTGTATGAT
TTTTCTAATACGACGGTCACTCTCGTTGAAAATCAACACGCAAGGTCTTT
CCAAAGACAGGTCTGCATGCGATAAAAGCACAAAAAAGTCGACGGGCGAC
GAAAGAAACACCATTTGGTGGGCCTTCTATCGATGCCATGCAGATCAGCA
AAGCAAGACACAAATAGTGCTCCTCCCAGCCAACGCTCCCAACGACCCAC
TGCAACGGATAACAGCAGTGCGTGCTTAGATTCAGTCCGGTTTACACGCT
CTCCTCCCCCCACCCCTAAACAACCCGTCGTGGGTTCTAAAGCGAAGCCT
CCCCTGCTTGAGGTGCGTGCTTGTGATCCGAGATAAATAGCCGTACGCGA
CACAAACCAAGAGAACAAGAGGGGAACGGCAACACGTGGACGCTTTCCCT
CGCGGCTCATTTGTGAGCGGCGATGTACCCCCGTTATTTCCCTCCCGATT
TCTTCCGCTTGCCGCTTCCCCCCCTGGGCCGAGAGATGGGCGACTGCACT
TCTTCCGACGACGCGAGAGCGGCGGGCTGGGTCGCCCTTGCGCCACCAGT
CACATCCATGTTGCTCAAAGAACGAAGTGGGGCCGGGATGGCACCAATGG
TAGCCGCAGGTGCAGGCGCCCCCCTGCCCCTCGCCGTCGCCACCGTGCCG
CGACCGCCCGG
back to top

protein sequence of EsuBft89_2a-0001

>EsuBft89_2 ID=EsuBft89_2|Name=EsuBft89_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=273bp
MMLFCGAWCAWRRGRRKRGEGRRHPLTEYGGQYGGCCMPMMPASYRGLSA
EGLARMMTIIVEVFGEFGLTVSEKKTETLQMRAKDKSTTTSQPDPPPPLT
IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGWELF
DRPNAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRV
IGYKRKKDTYRQLSYAQTLKRVQCQSVEATIRQRRLLIAGALATQPDGRL
PKRLMFGELAGGEKRRRGEQEQN
back to top

mRNA from alignment at Scaffold_601:166263..170402-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft89_2a-0001 ID=EsuBft89_2a-0001|Name=EsuBft89_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4140bp|location=Sequence derived from alignment at Scaffold_601:166263..170402- (Ectocarpus subulatus male Bft15b)
ATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAA
GCGGGGGGAGGGAAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTATG
GGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGTCTGCA
GAAGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTT
CGGGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCAGATGCGCGCTA
AGGACAAGTCGACTACAACATCACAGCCCGACCCGCCTCCACCACTGACC
ATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCT
CGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACA
GGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCTGGGAGCTCTTC
GACAGACCGAATGCGCCATTCCGACTCAAGATTCGCCTGCTCCAGGCGGA
GGCGATGGAGGCACTGCTATACGGTTGCATGACATGGTCACCACTCAGCG
GCCACTATCAGACGCTGCGGTCGATACACCACCGACTGCTCCTTCGAGTT
ATCGGGTACAAGCGCAAGAAAGACACCTACCGGCAGCTCTCTTACGCCCA
GACGCTGAAGAGGGTCCAATGTCAGAGCGTTGAAGCCACGATCCGACAAC
GACGCCTACTGATCGCGGGAGCGTTGGCAACGCAGCCGGACGGGCGACTC
CCGAAACGACTGATGTTCGGCGAACTGGCAGGGGGGGAGAAGCGACGTAG
GGGGGAACAGGAGCAGAACTAACCGAAGTGTGTGCTCGACGAGCTGAAGG
CATTCGGGGCCGACCACGGATCTACGAAAACCGATCCATGTTGTTTCGGA
AGCCCGGTACCGAAAGACACGGCACCGAAGTTAAAGTGGACGGAAGCCGC
CAAGGTAGAGGGGGGAGTACCCTGGCATGCGGCGGTGCTGCAGGGAGCTG
AGAGGTTCATGACCTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACGCTGC
ACCATTGCACCAGCCCCCCACTAATGATGACGTACCATTACAATGTATCG
CTGGTTGGTGGCCATGTTTGCGTGTTTGCTTGTCGCTAGTGGTTTCTCCA
CCGCGTGCCTTTTTCTTTGTCTTATTTCTTGTTATTTTTGGCCTGGTCCC
TTTTTGTCCTCGCTCTTTTTATTTAATTTTCTCTTTCCTTACAAGTGGCC
TAATTACTGTTTCCTATTATTTTCTTCTCTTTTACTCTTGTTCTCTTTTT
CGCTCATTTTCTGCGCCAGATGGCCTTGTTTCTGCTTGCGTTGTGAAGTA
CCAAGATTGAACCAAGGGGGTGTACCTCATTCTCTCCGGCCCGTGATGGT
GACCCCTAGTGTCAGTTGTTACCTCGCATAGCGCGCAGAGGGAGTGGAGA
ACTCCAGAATATCTGGCGTTGATTTCTATTGACTTGCGGACCCCTCGGGG
CCATTTCATTTGAGTGTGGTACCGTTTTAGGGTAAGTTGGCCTGCGACCA
CGGGAATCGACCGCGTCGAGTCTTGTATCAGTACGGACATACGAAGGTAC
TGGGTAGAGAGAGATCGGAACTGTTTGTAATGTGACGACAACAACAACAA
CAACAACAACAACAACAACAACAACAATTCACAACCCTCGAGTCACGGTG
CCACTGGCATTGGCCCAGGGCGCGTTAATACCCCAGTACTTGTGCGAGTT
TCCGTGCACAAGTTAAAAACGCCTCCAGAACCATCCTTTACATAACCTGT
ACAGAACCTTTGCAGAACCCACTTTGAAATCCCCACGGCCCGCACAACAC
ACCACCGCGCACCGCACGCACCGGCGACGGCTCTGATGGCCACACAGGAG
ACACACACGCAAGACGCCGTATGGATATCGTTCTTGCAGACGCGGTTGCA
TCACATGGCACCGGAATCACCGCAGGCGCCTCTGTGGAAAGTAAGAGAGG
GCAGACAGCAGCCGTTAGATTCTGCATGCGTTGGTTTTGCACCTCGGGGC
TCGCGACGTCCACGGCCGACATGCTGTCGTTGTCGTTCGGCCGTGAAAGA
GTCGTTACCGAGTACTCCTGTTGGTCGTTGCGCATGTCGTTCTTCCTCCA
AATTTGTTTTACTTTCCGTCAAGCTCTGTCTAAAGTTTATGTGTGGATCC
ACAGCAACAGGGATGTGTGTACGGCAAACCGGACAACCGCAGTGNTCGTC
GCGCATGTCGTTCTTCCTCCAAATTTGTTTAATTTCCTTAAGCTCTGTCT
AAAGTTTATGTGTGGATCCACAGCAGCAGGGATGTGTGTACGGCACACCG
GACAACCGCAGTGAGTGGATGCGCTGCAGAATTTCCGTATCGCAGTGTAA
CCGCAGTGTGACCGTGAGGTGATGTGATGTCCAATCGGTGCTCTATACCT
ACAGCAGTTATGACTTGTTTATCCGCTGGCAGGAGATGACGGCGGCGCCT
CACAGGAAGACACGCCGAAGCTCGTGGCTTGTTGCTTTCCGGAAGACGAG
GAGATTGCGGACAGGGCTAAGGCGAATGAGTTGGCCACGGCACGCGTGAA
AGCTGCGCTACAGGATAGAGAGTTGGAAATGTTGGGGCCTCTGACAAGAT
TTGTGACGATCCAACGTGCGTGGTTGGACGACAGTTGCTACGAGTACGCG
AGGAGTGGTGATGGGGTCATGTTGGCAGGCCTGCAGGAGTATGTGGCCGG
AGACGACAACCGCTATGTCCTGTACAACACAGATAGTAGTGCATGCTGCA
GCGCAAGGTCATTTCGACGTGGTGTCTCAGGGCTCGGGTTGGCACTGGAC
CTCTCAAGGGTTTGGAGGCAGCCGACGCAACGGGGGTTTGGAAATGCTGC
GGTGGTGTCGAAGCGCTGCGGCGTGGTTACTGCGGACTTCTGTAGTCAAT
GCTTTGATGTGGAAGGGTGGGGGCGTGTAATTGAGCATGCCGCGGGTGCT
GGGCATGTGGAGATGGTCCTGTGGTGCCTCGAGAATGGATGGGAATACAC
TGGATGGGAATATAGTGAGGCTATTATGCAGTCGGCTGCTAGCGAGGGAC
GTTGGGATGTCGTGAGGGCGCTGGAGAAGAGGGCGTTGGTGGAGAGGGGG
TACACATGGGTGGGGGAGATTGGCGAAAGTGCCCGAGCGTACGACGAGGG
AGTCATGATTTGGGACAAGGAAACACACCACCCTGTGAGTGATGTTTTTT
TGGTCATTTCCAGTCGGTGCATCATGTTTTTTTGGGAAGGGGGGTTGGTG
CCGCTTGCATGGCGTTTGTGGTGGTTGTGCTTCGTGGTAATGTTGTCCGA
AGGCATAGGGGCAGCTGGAGTTGACTGCGCGGCGGCTGGGCCGCGTTCGA
CGCGGGGGCGGGCAGGCGGCTTGTATGATTTTTCTAATACGACGGTCACT
CTCGTTGAAAATCAACACGCAAGGTCTTTCCAAAGACAGGTCTGCATGCG
ATAAAAGCACAAAAAAGTCGACGGGCGACGAAAGAAACACCATTTGGTGG
GCCTTCTATCGATGCCATGCAGATCAGCAAAGCAAGACACAAATAGTGCT
CCTCCCAGCCAACGCTCCCAACGACCCACTGCAACGGATAACAGCAGTGC
GTGCTTAGATTCAGTCCGGTTTACACGCTCTCCTCCCCCCACCCCTAAAC
AACCCGTCGTGGGTTCTAAAGCGAAGCCTCCCCTGCTTGAGGTGCGTGCT
TGTGATCCGAGATAAATAGCCGTACGCGACACAAACCAAGAGAACAAGAG
GGGAACGGCAACACGTGGACGCTTTCCCTCGCGGCTCATTTGTGAGCGGC
GATGTACCCCCGTTATTTCCCTCCCGATTTCTTCCGCTTGCCGCTTCCCC
CCCTGGGCCGAGAGATGGGCGACTGCACTTCTTCCGACGACGCGAGAGCG
GCGGGCTGGGTCGCCCTTGCGCCACCAGTCACATCCATGTTGCTCAAAGA
ACGAAGTGGGGCCGGGATGGCACCAATGGTAGCCGCAGGTGCAGGCGCCC
CCCTGCCCCTCGCCGTCGCCACCGTGCCGCGACCGCCCGG
back to top

Coding sequence (CDS) from alignment at Scaffold_601:166263..170402-

>EsuBft89_2a-0001 ID=EsuBft89_2a-0001|Name=EsuBft89_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=822bp|location=Sequence derived from alignment at Scaffold_601:166263..170402- (Ectocarpus subulatus male Bft15b)
ATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAA
GCGGGGGGAGGGAAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTATG
GGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGTCTGCA
GAAGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTT
CGGGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCAGATGCGCGCTA
AGGACAAGTCGACTACAACATCACAGCCCGACCCGCCTCCACCACTGACC
ATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCT
CGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACA
GGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCTGGGAGCTCTTC
GACAGACCGAATGCGCCATTCCGACTCAAGATTCGCCTGCTCCAGGCGGA
GGCGATGGAGGCACTGCTATACGGTTGCATGACATGGTCACCACTCAGCG
GCCACTATCAGACGCTGCGGTCGATACACCACCGACTGCTCCTTCGAGTT
ATCGGGTACAAGCGCAAGAAAGACACCTACCGGCAGCTCTCTTACGCCCA
GACGCTGAAGAGGGTCCAATGTCAGAGCGTTGAAGCCACGATCCGACAAC
GACGCCTACTGATCGCGGGAGCGTTGGCAACGCAGCCGGACGGGCGACTC
CCGAAACGACTGATGTTCGGCGAACTGGCAGGGGGGGAGAAGCGACGTAG
GGGGGAACAGGAGCAGAACTAA
back to top