EsuBft89_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft89_25a-0001
Unique Name	EsuBft89_25a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_601	contig	Scaffold_601:427914..430450 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6334.EFV48939
ProteomeId	EsuBft89_25
Protein domains	IPR013103
Protein domains	SSF56672
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	5
Max annot lvl	33208\|Metazoa
Length	2037
Hectar predicted targeting category	other localisation
Evalue	5.47e-84
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BGB6@33208\|Metazoa,3D5G4@33213\|Bilateria,40FC4@6231\|Nematoda
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824
GO	0097159
GO	1901363
GO	0044424
GO	0090304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft89_25a	EsuBft89_25a	Ectocarpus subulatus male Bft15b	gene	Scaffold_601 427914..430450 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_25a-0001	EsuBft89_25	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_601 427914..430450 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_25a-0001-exon	agat-exon-15301	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 427914..428157 +
EsuBft89_25a-0001-exon	agat-exon-15302	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 428320..428360 +
EsuBft89_25a-0001-exon	agat-exon-15303	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 428487..428709 +
EsuBft89_25a-0001-exon	EsuBft89_25a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 428854..430019 +
EsuBft89_25a-0001-exon	agat-exon-15304	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 430088..430450 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_25a-0001-cds	EsuBft89_25a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_601 427914..428157 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_601:427914..430450+
coding sequence from alignment at Scaffold_601:427914..430450+

spliced messenger RNA

>EsuBft89_25a-0001 ID=EsuBft89_25a-0001|Name=EsuBft89_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2037bp|location=Sequence derived from alignment at Scaffold_601:427914..430450+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCTCGTATTCAGGCGAAAGTTCTGTTTGAGCATGCGCAGTTACC
TAAGACTGATAGACTCTGGGCGGAGGCCATGCACTGGGCCTGCGAGGCAC
TCAATCACACGGCTTGTTCTGCTAACCCCGACTCCAAATCGCCGTATGAA
ACGTGGTATGGGGAAGCTCGTCCTGCTAGGCCGTATCCGTTTTTGAAGCC
AGCGTACTGTAAATGGCAGCGACCGTCTAAGCTGCTACCGAAGGAGGAGG
AAGGGGAGGAAAGTGACGACGATGTAGAAGCTGAGGGAGGGCAGGAAACG
GGGGAAGTAGAGTCCGAAGATCCGGGAGAGCATGATGAAGTAGAGTCGGA
GGATCCGGGAGGGCATGAAGAAGAGTCTATGGATCAGGGAGGGCAGGATA
CAGAGTCGGCGGGGCCGGGAGGGCAGGAAGTAGAGGTGGAGGCATCTCCT
CCAGCCGCTCGCCGTCCGCAGCATGTCGTTGACCTTGCTGATTTTAATAC
TGCTGCGCGTGATGCAGTAGAATTGCCGAAAGAGCTCATTCAGGACGTAG
AGCCAGAGCCTGGTAGCTATCAAGAAGCTCTGCGATCGAAGCATGCCACG
ATTTGGGATAAAGCCATGTCTGCAGAAGTTGAAGGCTTGATACGAGCAGG
AACGTTCACGTTAGCAGCAAAAATCCCAGAAGGTTGTAACGTGATTGATG
CTAGATGGGTTTTCAAATGGAAAGCAGACGAAACAGGAAAGATAGTAAAG
GCCAAGGCTAGGCTTGTAGCGAAGGGCTTCAAGCAGAAGCATGGGGTGGA
CTATCTTGAGACTTTCTCGCCTACTGCAAATGCTGCATCGATTCGATTGG
TAGTAGCATTGGCGTGCAAGTATAACTTGGAATTACTCCACTTAGACATT
GAGCAAGCCTTTGTTCAGTCGAAATTGGATCACGAGGTGTTCATGAAGTT
GCCTCCTGGCTGTGATTCGATGTCAGGAAAAATTGTCCGTTTGAACAAGA
GTTTGTACGGTTTGAAGCAAGCACCTAGAACATTTTACAAGAGGCTCGTG
TATGACCTGCTTCGGATAGGTTTCGAGCAGTCTCTGTCTGATCCCTGTGT
CCTGCGTTTCATGATGGAAGACGAGGTGATGGGTATAATCGCGATTCATG
TGGATGACATTCTGTATGCAGAAACGAAGGGGCTTGCCGAGGTGATTGTA
GAGGCACTAGGTGACTCTCTTCCTACGAAGAATTTGGGAGAAGTCATATT
CTTTCTTGGTTGCGCATTTAGTCGCGACCGCGAGGCTGGCACGATTGAGA
TTTCTCAAGAGAGTTGCATCAGGAGTGTTCTAGAGAGATTCAATATTTGT
CGCACCAGCTCGATCCCCGCTTCCCCTGCCAACGATAGCAGGTCCGTGAT
GGAGGATGAGGAGGCAGGAGATGTGCCGTTCAGGGAAGTGGTGGGATGCC
TGATGTGGATCGCCAACAATACGAGGCCAGAAACTTCGAACGCTTTGCGG
ACGGTGGCGAGACACTCTCACGAGCCCAAGAAGAGCGACTGGAAGGCAGC
CCAGAAGATTTTGAGTTATCTTAAGGAAACGGCACATCTAACTCTGAAGT
ACAAGCAGGACACTACGGTAGACGTAGGCACGTTAGTGTACGTAGCGCTG
ACTTTGCCAGCAAGGCCACTGACCAAATGTGTCTCACTGTCAACTTCTGA
AGCAGAGTATATTGCGATGGGTGACGGTGTTAAGGAGGCTCTCTTTGTGA
ACGGGATGCTTCAGTTCTTGAGACCTAGTGCGAAGCCTCGGAAAATTGAC
GTCTTTGAGGACAACGAAGGAGCGATTGCGCTTGCAGAGAATCCGCTTAG
CTCGAGTAGGAGTAAGCACATTGACGTGAGGCACCACTTCCTTAGGAATT
TGACGGAGGAGGGCGTGATCGAGGTCACCCATGTCCCAAGCAAGGAGCAG
CATGCTGACATCCTTACAAAGGCTCTACCGAGGAACCTTTTTGAAGTTCA
CGGTGACTTTGTCCTTGGCTCAGTAGCTGAGAAGTAG

protein sequence of EsuBft89_25a-0001

>EsuBft89_25 ID=EsuBft89_25|Name=EsuBft89_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=678bp
MAARIQAKVLFEHAQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYE
TWYGEARPARPYPFLKPAYCKWQRPSKLLPKEEEGEESDDDVEAEGGQET
GEVESEDPGEHDEVESEDPGGHEEESMDQGGQDTESAGPGGQEVEVEASP
PAARRPQHVVDLADFNTAARDAVELPKELIQDVEPEPGSYQEALRSKHAT
IWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVK
AKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDI
EQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQAPRTFYKRLV
YDLLRIGFEQSLSDPCVLRFMMEDEVMGIIAIHVDDILYAETKGLAEVIV
EALGDSLPTKNLGEVIFFLGCAFSRDREAGTIEISQESCIRSVLERFNIC
RTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNALR
TVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVAL
TLPARPLTKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKID
VFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ
HADILTKALPRNLFEVHGDFVLGSVAEK

mRNA from alignment at Scaffold_601:427914..430450+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft89_25a-0001 ID=EsuBft89_25a-0001|Name=EsuBft89_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2537bp|location=Sequence derived from alignment at Scaffold_601:427914..430450+ (Ectocarpus subulatus male Bft15b)
ATGGCGGCTCGTATTCAGGCGAAAGTTCTGTTTGAGCATGCGCAGTTACC
TAAGACTGATAGACTCTGGGCGGAGGCCATGCACTGGGCCTGCGAGGCAC
TCAATCACACGGCTTGTTCTGCTAACCCCGACTCCAAATCGCCGTATGAA
ACGTGGTATGGGGAAGCTCGTCCTGCTAGGCCGTATCCGTTTTTGAAGCC
AGCGTACTGTAAATGGCAGCGACCGTCTAAGCTGCTACCGAAGGGTGAGA
GTTGCTTTTATGTTGGTCCTTCGAGAGACCACCCACGTGATTGTCATAGA
GTACTCACCAGAGCTGGGACTATACAGGAAACGAGAAACGTAACGTGGGA
AGCGTTGCCGTCACAGCTCCCTCCACCGCAACCTCCGCTGCCGATAGAGG
TCGCAGAGGAGGAAGGGGAGGAAAGTGACGACGATGTAGAAGCTGAGGTA
TGGCCACTTGTAGGAAGAGGAGTTGCCCACCCACTTTTTCGAAATAGTGC
AGCGGTCCTCCCAACCTCCCCTAGTAGATCAATTCCCTCCATATCTTCTT
AGTCCACTGATGGGGAGGAGCAGGGAGGGCAGGAAACGGGGGAAGTAGAG
TCCGAAGATCCGGGAGAGCATGATGAAGTAGAGTCGGAGGATCCGGGAGG
GCATGAAGAAGAGTCTATGGATCAGGGAGGGCAGGATACAGAGTCGGCGG
GGCCGGGAGGGCAGGAAGTAGAGGTGGAGGCATCTCCTCCAGCCGCTCGC
CGTCCGCAGCATGTCGTTGACCTTGCTGATTTTAATACTGCTGCGCGTGA
GAGTGATGAGGTCCGAGCTGGTAGAACTCGTGCGCAAACCCGTGCGATAA
ATCAGCAGAGCGTATCCGGCCTTGTGGCTACTCTAGGACCCATCTCAGCA
TCAGAGATAGTACATGCACTCATAGCGGAGCAGAGAGCAGGTGATGCAGT
AGAATTGCCGAAAGAGCTCATTCAGGACGTAGAGCCAGAGCCTGGTAGCT
ATCAAGAAGCTCTGCGATCGAAGCATGCCACGATTTGGGATAAAGCCATG
TCTGCAGAAGTTGAAGGCTTGATACGAGCAGGAACGTTCACGTTAGCAGC
AAAAATCCCAGAAGGTTGTAACGTGATTGATGCTAGATGGGTTTTCAAAT
GGAAAGCAGACGAAACAGGAAAGATAGTAAAGGCCAAGGCTAGGCTTGTA
GCGAAGGGCTTCAAGCAGAAGCATGGGGTGGACTATCTTGAGACTTTCTC
GCCTACTGCAAATGCTGCATCGATTCGATTGGTAGTAGCATTGGCGTGCA
AGTATAACTTGGAATTACTCCACTTAGACATTGAGCAAGCCTTTGTTCAG
TCGAAATTGGATCACGAGGTGTTCATGAAGTTGCCTCCTGGCTGTGATTC
GATGTCAGGAAAAATTGTCCGTTTGAACAAGAGTTTGTACGGTTTGAAGC
AAGCACCTAGAACATTTTACAAGAGGCTCGTGTATGACCTGCTTCGGATA
GGTTTCGAGCAGTCTCTGTCTGATCCCTGTGTCCTGCGTTTCATGATGGA
AGACGAGGTGATGGGTATAATCGCGATTCATGTGGATGACATTCTGTATG
CAGAAACGAAGGGGCTTGCCGAGGTGATTGTAGAGGCACTAGGTGACTCT
CTTCCTACGAAGAATTTGGGAGAAGTCATATTCTTTCTTGGTTGCGCATT
TAGTCGCGACCGCGAGGCTGGCACGATTGAGATTTCTCAAGAGAGTTGCA
TCAGGAGTGTTCTAGAGAGATTCAATATTTGTCGCACCAGCTCGATCCCC
GCTTCCCCTGCCAACGATAGCAGGTCCGTGATGGAGGATGAGGAGGCAGG
AGATGTGCCGTTCAGGGAAGTGGTGGGATGCCTGATGTGGATCGCCAACA
ATACGAGGCCAGAAACTTCGAACGCTTTGCGGACGGTGGCGAGACACTCT
CACGAGCCCAAGAAGAGCGACTGGAAGGCAGCCCAGAAGATTTTGAGTTA
TCTTAAGGAAACGGCACATCTAACTCTGAAGTACAAGCAGGACACTACGG
TAGACGTAGGCACGTTAGTGTACGTAGCGCTGACTTTGCCAGCAAGGCCA
CTGACCGTAGATCAGTTTCTGGAGCATTAGTTCTTGTAGCTGGCTGTCTT
GTGTCTTGGTTTTCTTGGACGCAGAAATGTGTCTCACTGTCAACTTCTGA
AGCAGAGTATATTGCGATGGGTGACGGTGTTAAGGAGGCTCTCTTTGTGA
ACGGGATGCTTCAGTTCTTGAGACCTAGTGCGAAGCCTCGGAAAATTGAC
GTCTTTGAGGACAACGAAGGAGCGATTGCGCTTGCAGAGAATCCGCTTAG
CTCGAGTAGGAGTAAGCACATTGACGTGAGGCACCACTTCCTTAGGAATT
TGACGGAGGAGGGCGTGATCGAGGTCACCCATGTCCCAAGCAAGGAGCAG
CATGCTGACATCCTTACAAAGGCTCTACCGAGGAACCTTTTTGAAGTTCA
CGGTGACTTTGTCCTTGGCTCAGTAGCTGAGAAGTAG

Coding sequence (CDS) from alignment at Scaffold_601:427914..430450+

>EsuBft89_25a-0001 ID=EsuBft89_25a-0001|Name=EsuBft89_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2037bp|location=Sequence derived from alignment at Scaffold_601:427914..430450+ (Ectocarpus subulatus male Bft15b)
ATGGCGGCTCGTATTCAGGCGAAAGTTCTGTTTGAGCATGCGCAGTTACC
TAAGACTGATAGACTCTGGGCGGAGGCCATGCACTGGGCCTGCGAGGCAC
TCAATCACACGGCTTGTTCTGCTAACCCCGACTCCAAATCGCCGTATGAA
ACGTGGTATGGGGAAGCTCGTCCTGCTAGGCCGTATCCGTTTTTGAAGCC
AGCGTACTGTAAATGGCAGCGACCGTCTAAGCTGCTACCGAAGGAGGAGG
AAGGGGAGGAAAGTGACGACGATGTAGAAGCTGAGGGAGGGCAGGAAACG
GGGGAAGTAGAGTCCGAAGATCCGGGAGAGCATGATGAAGTAGAGTCGGA
GGATCCGGGAGGGCATGAAGAAGAGTCTATGGATCAGGGAGGGCAGGATA
CAGAGTCGGCGGGGCCGGGAGGGCAGGAAGTAGAGGTGGAGGCATCTCCT
CCAGCCGCTCGCCGTCCGCAGCATGTCGTTGACCTTGCTGATTTTAATAC
TGCTGCGCGTGATGCAGTAGAATTGCCGAAAGAGCTCATTCAGGACGTAG
AGCCAGAGCCTGGTAGCTATCAAGAAGCTCTGCGATCGAAGCATGCCACG
ATTTGGGATAAAGCCATGTCTGCAGAAGTTGAAGGCTTGATACGAGCAGG
AACGTTCACGTTAGCAGCAAAAATCCCAGAAGGTTGTAACGTGATTGATG
CTAGATGGGTTTTCAAATGGAAAGCAGACGAAACAGGAAAGATAGTAAAG
GCCAAGGCTAGGCTTGTAGCGAAGGGCTTCAAGCAGAAGCATGGGGTGGA
CTATCTTGAGACTTTCTCGCCTACTGCAAATGCTGCATCGATTCGATTGG
TAGTAGCATTGGCGTGCAAGTATAACTTGGAATTACTCCACTTAGACATT
GAGCAAGCCTTTGTTCAGTCGAAATTGGATCACGAGGTGTTCATGAAGTT
GCCTCCTGGCTGTGATTCGATGTCAGGAAAAATTGTCCGTTTGAACAAGA
GTTTGTACGGTTTGAAGCAAGCACCTAGAACATTTTACAAGAGGCTCGTG
TATGACCTGCTTCGGATAGGTTTCGAGCAGTCTCTGTCTGATCCCTGTGT
CCTGCGTTTCATGATGGAAGACGAGGTGATGGGTATAATCGCGATTCATG
TGGATGACATTCTGTATGCAGAAACGAAGGGGCTTGCCGAGGTGATTGTA
GAGGCACTAGGTGACTCTCTTCCTACGAAGAATTTGGGAGAAGTCATATT
CTTTCTTGGTTGCGCATTTAGTCGCGACCGCGAGGCTGGCACGATTGAGA
TTTCTCAAGAGAGTTGCATCAGGAGTGTTCTAGAGAGATTCAATATTTGT
CGCACCAGCTCGATCCCCGCTTCCCCTGCCAACGATAGCAGGTCCGTGAT
GGAGGATGAGGAGGCAGGAGATGTGCCGTTCAGGGAAGTGGTGGGATGCC
TGATGTGGATCGCCAACAATACGAGGCCAGAAACTTCGAACGCTTTGCGG
ACGGTGGCGAGACACTCTCACGAGCCCAAGAAGAGCGACTGGAAGGCAGC
CCAGAAGATTTTGAGTTATCTTAAGGAAACGGCACATCTAACTCTGAAGT
ACAAGCAGGACACTACGGTAGACGTAGGCACGTTAGTGTACGTAGCGCTG
ACTTTGCCAGCAAGGCCACTGACCAAATGTGTCTCACTGTCAACTTCTGA
AGCAGAGTATATTGCGATGGGTGACGGTGTTAAGGAGGCTCTCTTTGTGA
ACGGGATGCTTCAGTTCTTGAGACCTAGTGCGAAGCCTCGGAAAATTGAC
GTCTTTGAGGACAACGAAGGAGCGATTGCGCTTGCAGAGAATCCGCTTAG
CTCGAGTAGGAGTAAGCACATTGACGTGAGGCACCACTTCCTTAGGAATT
TGACGGAGGAGGGCGTGATCGAGGTCACCCATGTCCCAAGCAAGGAGCAG
CATGCTGACATCCTTACAAAGGCTCTACCGAGGAACCTTTTTGAAGTTCA
CGGTGACTTTGTCCTTGGCTCAGTAGCTGAGAAGTAG