EsuBft89_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft89_22a-0001
Unique Name	EsuBft89_22a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_601	contig	Scaffold_601:403113..406333 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4530.OS08T0125300-01
ProteomeId	EsuBft89_22
Protein domains	PR01217
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Max annot lvl	35493\|Streptophyta
Length	228
Hectar predicted targeting category	other localisation
Evalue	4.86e-10
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M5VU@4447\|Liliopsida,3IIIB@38820\|Poales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft89_22a	EsuBft89_22a	Ectocarpus subulatus male Bft15b	gene	Scaffold_601 403113..406333 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_22a-0001-exon	EsuBft89_22a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 403113..404330 -
EsuBft89_22a-0001-exon	agat-exon-15294	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 404810..405341 -
EsuBft89_22a-0001-exon	agat-exon-15293	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 405579..405734 -
EsuBft89_22a-0001-exon	agat-exon-15295	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 405951..406333 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_22a-0001-cds	EsuBft89_22a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_601 403113..404330 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_22a-0001	EsuBft89_22	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_601 403113..406333 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_601:403113..406333-
coding sequence from alignment at Scaffold_601:403113..406333-

spliced messenger RNA

>EsuBft89_22a-0001 ID=EsuBft89_22a-0001|Name=EsuBft89_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2289bp|location=Sequence derived from alignment at Scaffold_601:403113..406333- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATGGAGCCCGAGAGGAGCAAGGGGGAGAGGCGCGAGGTGAAGCT
CGCTCTCGCCGCGTCTGGCATGGGCCGGCGCGGCGGGAGAAGTGGGGGGG
CATCCGGGGGTCAAGAAGGCGGTCTGGCAGCAGCTGGCGGCCAAAATCGT
GACGGAGAGAAGAAAAATAGTGACGTGTTCAACGACGACCCCGGCGGATT
TTGCCGCTACCACCAGTCCGAGCTTCACACCAACGAGCAGTGTCGTCTCC
AGCAGCAACTGCGGCGCGCGCGTTCGAGAGAGGGCGCCGCGGAACGCCGC
TCGGGCGCGGCAGCCGCGGTGGCGGCGGTAGCCAGCGAGGGGGTAGACCG
CCGCAGGGGCCAGGCCGCGGTGGCGGCCGATGGAGAGCAGGCGTACGTTG
TGGACTACGCCCACGATGATGGTGGCTTCTACGAAGACTACGGCGACTAC
GACGACGGCTACTACTACGAAGACGGCTACCACGACGCCGGGTACGCCCA
CTACGCCGGCGATGGGGACAGCTACAGCTACCCCTCAGGGATAGGAGTGA
CGATTGGAGTAGAGTCTGCTGCGTCTGCTTCGTCTTTGCTGAATGTGGAA
TCTCGTGAGGGGCCGCCTGGTCGAGAGAGATGGGTAGCTGACTCAGGAGC
CAGCAACAGTTTCGCCAACAGCAGCCTACACATGTATGACCTGCAAGAAA
TCCCCGCCAGTAGGAAGTATGTCGTTGTAGGTGATGGTCAACTGCTAGAA
GTGCAAGCCATCGGTAGTATTAATCTTAGTTTCTTTCAGGAGGATGAGAA
TGGTGAGAAAACGACGATGTGTGTGAAGCTCACTGACGTGTCTGTTGTAG
AGAGCCTGAGCTTCAACTTGTTCTCAACGCATGCTGCTTCTCTGAAGCAA
CCAATCCTCTACGACGAACGTGGTGCAACCCTACAAGATGGACTGCTCTT
TGCTACAGGGGAAAAAGCGTCTGCAGCAAATGCCATGCGGTTGCCGTACG
ATCCATGTGCGACTATTGTAGACCCTGATGCTTTGCCCGCATTCGTGACT
GCCCCCGATTCCGCCCCCGCCAGAGGCATCGTGCTCGCCGGCAAGCTGGA
ACCGTGCACGGACTGCATGAAGGCGAAGGGCAGGCGAGGGTCGGTGCCGC
GGGGGCCGGGAGCGTGGGCGTCCAAGCCACTGGGGCGTGTTCACCTGGAC
CTGTGTGGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNACGTGGGGCGGTACGACCTCGGGCGCATCGAGTGTTTCCGCGTCGAC
AACGGCACCGAGTGGACCCGCGGCGACTTCCGGCGCTTCTGCGACGACAA
CGGTATCGGCGTCGAGTTCATACCTCCTGGCGTTCCGCAGTACAATGGCG
TCGTCGAGAGCGCCAACTGGCGCATCATGAAGGCCAGCATGGCCGCTCGC
CGCAGCGCTGGCCGTGTGTTCAACGTCGACTTCGCCTCCATCCCCGGCCT
CGACGAGCGCGGTGACCGTCTTTGGATGGATTCGGCGAAATGGGCCGCCG
ACGCTCTCAACCAATCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCG
CACGAGATGTTCACCGGCGAGCAGGGGCCTTTCCGCGTGCTGCCGTTCTT
CCAGCCCGGCTTCATGCGTGAGGATCGCCGCACCAAGCTCGACGACCAGG
CCACCCTCTGCTACTACCTGAACGGCGGCGACAACCACCCGAGCGGCACC
GTCAAGGTCCTCAAGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGT
GTCGTCGGTGACGTCGGCGCCAGCCGGTGAGGGGGGTTCCGCTGGTGTCA
CCGGTGCACCGACACCCCCCCCGTTCACCCCGCCGGTCGTACCGATCAAC
TTTGGCCCAGCACCGACGCCTTCGACCGCAGCACCGCCGCCGCCAGCGCC
CACGCCGTCGCCCGCTCCCGCTCCCGCTGCCGCTTCGCCCCCTGCCGCAA
CGCCGCCGCCAGCGACCACGCCGCCGCCCGCTCCCACGCCTTCACAACCG
CCCTCTGCCACTTCGCCGTCACCGTCGGCGACCCCCGCTCCTGGCCAGCC
GTCCTCGGCCTCTTCGCTGTCACCGTCGGCGACCCCAGATCCAGACCAGC
CGCCGCCGCCGTCGCCGGACCCCGCGATGCTCCCGTTACGGCTCACGCCA
TGCGGCAGCTTCGCCCGGGTACAAAGGCCGAGGGTATGA

protein sequence of EsuBft89_22a-0001

>EsuBft89_22 ID=EsuBft89_22|Name=EsuBft89_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=762bp
MEMEPERSKGERREVKLALAASGMGRRGGRSGGASGGQEGGLAAAGGQNR
DGEKKNSDVFNDDPGGFCRYHQSELHTNEQCRLQQQLRRARSREGAAERR
SGAAAAVAAVASEGVDRRRGQAAVAADGEQAYVVDYAHDDGGFYEDYGDY
DDGYYYEDGYHDAGYAHYAGDGDSYSYPSGIGVTIGVESAASASSLLNVE
SREGPPGRERWVADSGASNSFANSSLHMYDLQEIPASRKYVVVGDGQLLE
VQAIGSINLSFFQEDENGEKTTMCVKLTDVSVVESLSFNLFSTHAASLKQ
PILYDERGATLQDGLLFATGEKASAANAMRLPYDPCATIVDPDALPAFVT
APDSAPARGIVLAGKLEPCTDCMKAKGRRGSVPRGPGAWASKPLGRVHLD
LCGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRYDLGRIECFRVD
NGTEWTRGDFRRFCDDNGIGVEFIPPGVPQYNGVVESANWRIMKASMAAR
RSAGRVFNVDFASIPGLDERGDRLWMDSAKWAADALNQSATKANPGRRSP
HEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGT
VKVLKASTGRVVYTNNVSSVTSAPAGEGGSAGVTGAPTPPPFTPPVVPIN
FGPAPTPSTAAPPPPAPTPSPAPAPAAASPPAATPPPATTPPPAPTPSQP
PSATSPSPSATPAPGQPSSASSLSPSATPDPDQPPPPSPDPAMLPLRLTP
CGSFARVQRPRV

mRNA from alignment at Scaffold_601:403113..406333-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft89_22a-0001 ID=EsuBft89_22a-0001|Name=EsuBft89_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3221bp|location=Sequence derived from alignment at Scaffold_601:403113..406333- (Ectocarpus subulatus male Bft15b)
ATGGAGATGGAGCCCGAGAGGAGCAAGGGGGAGAGGCGCGAGGTGAAGCT
CGCTCTCGCCGCGTCTGGCATGGGCCGGCGCGGCGGGAGAAGTGGGGGGG
CATCCGGGGGTCAAGAAGGCGGTCTGGCAGCAGCTGGCGGCCAAAATCGT
GACGGAGAGAAGAAAAATAGTGACGTGTTCAACGACGACCCCGGCGGATT
TTGCCGCTACCACCAGTCCGAGCTTCACACCAACGAGCAGTGTCGTCTCC
AGCAGCAACTGCGGCGCGCGCGTTCGAGAGAGGGCGCCGCGGAACGCCGC
TCGGGCGCGGCAGCCGCGGTGGCGGCGGTAGCCAGCGAGGGGGTAGACCG
CCGCAGGGGCCAGGCCGCGGTGGCGGCCGATGGGTGAGGCTAGAAGGGCA
GCAGCACCACACCGATCAGGGTGGCGGTGGCTGGAGCCAAGCCTCACCCC
CCCCGAGACCTCTTCGTGGATGTGGGCCTGGTGGTCGGCTGGGGCGTCAC
CCGGGGGGTCGTGGGCCCGCGGGACGCCACAGCAGCGATGGGCGTGCCGA
GAGAACGAGCAGGGAAAGGCCCGGGGCACGCGCGTTCTGGCCACGGAAGA
GAGCAGGCGTACGTTGTGGACTACGCCCACGATGATGGTGGCTTCTACGA
AGACTACGGCGACTACGACGACGGCTACTACTACGAAGACGGCTACCACG
ACGCCGGGTACGCCCACTACGCCGGCGATGGGGACAGCTACAGCTACCCC
TCAGGGTACGAAGACAGCCGTTCATCTGACGGCGGCATCCACTACGTGTA
CTACCCTCCTGCCGGCGAAGATTCGTCATCCGAGCAGCAACGTTAGCCCC
CCCCCGCGAGCAGTAGCACCACCGCTTCCTCCTCGTCCTCTACTCCTTCT
CCCGGCGCGCCTCCATCTTCGGGCTACCTCCACCTCTGCACGGCACAATC
GGTTCGCCTAGGCAAGTCTCACCCTGACGATTTTTTCAGTAGGATAGGAG
TGACGATTGGAGTAGAGTCTGCTGCGTCTGCTTCGTCTTTGCTGAATGTG
GAATCTCGTGAGGGGCCGCCTGGTCGAGAGAGATGGGTAGCTGACTCAGG
AGCCAGCAACAGTTTCGCCAACAGCAGCCTACACATGTATGACCTGCAAG
AAATCCCCGCCAGTAGGAAGTATGTCGTTGTAGGTGATGGTCAACTGCTA
GAAGTGCAAGCCATCGGTAGTATTAATCTTAGTTTCTTTCAGGAGGATGA
GAATGGTGAGAAAACGACGATGTGTGTGAAGCTCACTGACGTGTCTGTTG
TAGAGAGCCTGAGCTTCAACTTGTTCTCAACGCATGCTGCTTCTCTGAAG
CAACCAATCCTCTACGACGAACGTGGTGCAACCCTACAAGATGGACTGCT
CTTTGCTACAGGGGAAAAAGCGTCTGCAGCAAATGCCATGCGGTTGCCGT
ACGATCCATGTGCGACTATTGTAGACCCTGATGCTTTGCCCGCATTCGTG
ACTGCCCCCGATTCCGCCCCCGCCGTTGGCTCCGCGCGTTCCCCTTCCCA
AAAGGAGGGCTCCGCCAAATCATTATGTCCATGTTGCGTATTCCGCCCAC
TGGTCCCACCAGTGTAGTACCTGCGAGTGAGAGCGTCCCGCCCGCCGGCT
CTGCCGACGTAGTACCTTCCTCGGCGTCCGAGTTTGTGTGTGTGGGTACT
TTTCCGGGTATGGATCTTGGAGATACGAGTGCGCTCACCGACGAGCAGCT
CATGGATGGCTATGATGACACCCCGTATCAACATTTCTTCCCTGTGATTA
TCCCAGAGAGTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGCATTGAT
GGGGGTTCTGATTTTGACTTGGGGGCGGCCGTGCTTGGCCCTGGTGCGTC
CCCGTTTGCTCTTGGTTAGACTGAAAAGTCCGTTGACATCAACCGCTTCC
ACCGCTCCCTTGCCCACGCTTGCGAGCCTCTTTTGAGAGAAACTGCCTAG
CAGAGAGGCATCGTGCTCGCCGGCAAGCTGGAACCGTGCACGGACTGCAT
GAAGGCGAAGGGCAGGCGAGGGTCGGTGCCGCGGGGGCCGGGAGCGTGGG
CGTCCAAGCCACTGGGGCGTGTTCACCTGGACCTGTGTGGACCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTGGGGCGGTACG
ACCTCGGGCGCATCGAGTGTTTCCGCGTCGACAACGGCACCGAGTGGACC
CGCGGCGACTTCCGGCGCTTCTGCGACGACAACGGTATCGGCGTCGAGTT
CATACCTCCTGGCGTTCCGCAGTACAATGGCGTCGTCGAGAGCGCCAACT
GGCGCATCATGAAGGCCAGCATGGCCGCTCGCCGCAGCGCTGGCCGTGTG
TTCAACGTCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGCGGTGACCG
TCTTTGGATGGATTCGGCGAAATGGGCCGCCGACGCTCTCAACCAATCGG
CGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTCACCGGC
GAGCAGGGGCCTTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCATGCG
TGAGGATCGCCGCACCAAGCTCGACGACCAGGCCACCCTCTGCTACTACC
TGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGCG
TCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTCGGTGACGTCGGC
GCCAGCCGGTGAGGGGGGTTCCGCTGGTGTCACCGGTGCACCGACACCCC
CCCCGTTCACCCCGCCGGTCGTACCGATCAACTTTGGCCCAGCACCGACG
CCTTCGACCGCAGCACCGCCGCCGCCAGCGCCCACGCCGTCGCCCGCTCC
CGCTCCCGCTGCCGCTTCGCCCCCTGCCGCAACGCCGCCGCCAGCGACCA
CGCCGCCGCCCGCTCCCACGCCTTCACAACCGCCCTCTGCCACTTCGCCG
TCACCGTCGGCGACCCCCGCTCCTGGCCAGCCGTCCTCGGCCTCTTCGCT
GTCACCGTCGGCGACCCCAGATCCAGACCAGCCGCCGCCGCCGTCGCCGG
ACCCCGCGATGCTCCCGTTACGGCTCACGCCATGCGGCAGCTTCGCCCGG
GTACAAAGGCCGAGGGTATGA

Coding sequence (CDS) from alignment at Scaffold_601:403113..406333-

>EsuBft89_22a-0001 ID=EsuBft89_22a-0001|Name=EsuBft89_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2289bp|location=Sequence derived from alignment at Scaffold_601:403113..406333- (Ectocarpus subulatus male Bft15b)
ATGGAGATGGAGCCCGAGAGGAGCAAGGGGGAGAGGCGCGAGGTGAAGCT
CGCTCTCGCCGCGTCTGGCATGGGCCGGCGCGGCGGGAGAAGTGGGGGGG
CATCCGGGGGTCAAGAAGGCGGTCTGGCAGCAGCTGGCGGCCAAAATCGT
GACGGAGAGAAGAAAAATAGTGACGTGTTCAACGACGACCCCGGCGGATT
TTGCCGCTACCACCAGTCCGAGCTTCACACCAACGAGCAGTGTCGTCTCC
AGCAGCAACTGCGGCGCGCGCGTTCGAGAGAGGGCGCCGCGGAACGCCGC
TCGGGCGCGGCAGCCGCGGTGGCGGCGGTAGCCAGCGAGGGGGTAGACCG
CCGCAGGGGCCAGGCCGCGGTGGCGGCCGATGGAGAGCAGGCGTACGTTG
TGGACTACGCCCACGATGATGGTGGCTTCTACGAAGACTACGGCGACTAC
GACGACGGCTACTACTACGAAGACGGCTACCACGACGCCGGGTACGCCCA
CTACGCCGGCGATGGGGACAGCTACAGCTACCCCTCAGGGATAGGAGTGA
CGATTGGAGTAGAGTCTGCTGCGTCTGCTTCGTCTTTGCTGAATGTGGAA
TCTCGTGAGGGGCCGCCTGGTCGAGAGAGATGGGTAGCTGACTCAGGAGC
CAGCAACAGTTTCGCCAACAGCAGCCTACACATGTATGACCTGCAAGAAA
TCCCCGCCAGTAGGAAGTATGTCGTTGTAGGTGATGGTCAACTGCTAGAA
GTGCAAGCCATCGGTAGTATTAATCTTAGTTTCTTTCAGGAGGATGAGAA
TGGTGAGAAAACGACGATGTGTGTGAAGCTCACTGACGTGTCTGTTGTAG
AGAGCCTGAGCTTCAACTTGTTCTCAACGCATGCTGCTTCTCTGAAGCAA
CCAATCCTCTACGACGAACGTGGTGCAACCCTACAAGATGGACTGCTCTT
TGCTACAGGGGAAAAAGCGTCTGCAGCAAATGCCATGCGGTTGCCGTACG
ATCCATGTGCGACTATTGTAGACCCTGATGCTTTGCCCGCATTCGTGACT
GCCCCCGATTCCGCCCCCGCCAGAGGCATCGTGCTCGCCGGCAAGCTGGA
ACCGTGCACGGACTGCATGAAGGCGAAGGGCAGGCGAGGGTCGGTGCCGC
GGGGGCCGGGAGCGTGGGCGTCCAAGCCACTGGGGCGTGTTCACCTGGAC
CTGTGTGGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNACGTGGGGCGGTACGACCTCGGGCGCATCGAGTGTTTCCGCGTCGAC
AACGGCACCGAGTGGACCCGCGGCGACTTCCGGCGCTTCTGCGACGACAA
CGGTATCGGCGTCGAGTTCATACCTCCTGGCGTTCCGCAGTACAATGGCG
TCGTCGAGAGCGCCAACTGGCGCATCATGAAGGCCAGCATGGCCGCTCGC
CGCAGCGCTGGCCGTGTGTTCAACGTCGACTTCGCCTCCATCCCCGGCCT
CGACGAGCGCGGTGACCGTCTTTGGATGGATTCGGCGAAATGGGCCGCCG
ACGCTCTCAACCAATCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCG
CACGAGATGTTCACCGGCGAGCAGGGGCCTTTCCGCGTGCTGCCGTTCTT
CCAGCCCGGCTTCATGCGTGAGGATCGCCGCACCAAGCTCGACGACCAGG
CCACCCTCTGCTACTACCTGAACGGCGGCGACAACCACCCGAGCGGCACC
GTCAAGGTCCTCAAGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGT
GTCGTCGGTGACGTCGGCGCCAGCCGGTGAGGGGGGTTCCGCTGGTGTCA
CCGGTGCACCGACACCCCCCCCGTTCACCCCGCCGGTCGTACCGATCAAC
TTTGGCCCAGCACCGACGCCTTCGACCGCAGCACCGCCGCCGCCAGCGCC
CACGCCGTCGCCCGCTCCCGCTCCCGCTGCCGCTTCGCCCCCTGCCGCAA
CGCCGCCGCCAGCGACCACGCCGCCGCCCGCTCCCACGCCTTCACAACCG
CCCTCTGCCACTTCGCCGTCACCGTCGGCGACCCCCGCTCCTGGCCAGCC
GTCCTCGGCCTCTTCGCTGTCACCGTCGGCGACCCCAGATCCAGACCAGC
CGCCGCCGCCGTCGCCGGACCCCGCGATGCTCCCGTTACGGCTCACGCCA
TGCGGCAGCTTCGCCCGGGTACAAAGGCCGAGGGTATGA