EsuBft89_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft89_16a-0001
Unique Name	EsuBft89_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_601	contig	Scaffold_601:364494..366202 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft89_16
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	166
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft89_16a	EsuBft89_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_601 364494..366202 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_16a-0001	EsuBft89_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_601 365873..366136 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_16a-0001-exon	EsuBft89_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 364494..365763 -
EsuBft89_16a-0001-exon	agat-exon-15278	Ectocarpus subulatus male Bft15b	exon	Scaffold_601 365810..366202 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_16a-0001-exon	agat-three_prime_utr-22880	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_601 364494..365763 -
EsuBft89_16a-0001-exon	agat-three_prime_utr-22881	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_601 365810..365872 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_16a-0001-cds	EsuBft89_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_601 365873..366136 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft89_16a-0001-exon	agat-five_prime_utr-14835	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_601 366137..366202 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_601:364494..366202-
coding sequence from alignment at Scaffold_601:364494..366202-

spliced messenger RNA

>EsuBft89_16a-0001 ID=EsuBft89_16a-0001|Name=EsuBft89_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1663bp|location=Sequence derived from alignment at Scaffold_601:364494..366202- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCCAGGCTCCGAGCATTGAGATGTCCAAGCCTTCCTGTGCCAGGTGTC
CGCGCTCACTAGCGTAATGCAGACGGCGTTCGCCGTGTGGGTCTGTGACT
GCTTCTGGTGGGGCACGAGGGATTTCGTGCCAGATGGCTGGACGTTCTGC
TCGAACGTGATGTCGAGGGTGCACATGCCTTTGTCTCGCGGATCTTGTGT
GACTGGAATCACCTTGCCTTGGATAGTGAGGTGCGAAGTGCTCTCTTCGA
CGACGCAGCGCAATCCCTTCTTCAGGAGGGAGGTGGGCGAAAAAATGTTG
CGATCAAGTCCCGGAACGATGAGTCCCTGAATCCGCACGCGCAATTGCTG
TCCTCGATTGTCCTTGACGGTGCAGTATAGGATGCCCGTGGCCAGTTTCG
CTGGGTGTAATCGTGGAGGTTTCCGTCGGGGATGAGGCGATTGTCAAACA
TGGTCTCCGATGCTCCCGTGTCTACCAGCAGGCCTACCCCGGTGGAGCTC
GCGGCGAAGTTGCGTCCTGAGATGCGGGAACACGTGCCGAACATGAAGCC
GCTGTCAAAGGCGTCCTCGTCCCGGGTGAAGTCGACAACTGCCACTTCAT
TGTTTGAGTCGTGCTTGTTGGACGCCGACGAGCAGTGAGTACAGTTGGAG
CACGCGATGAATGCCTTACTTGAGTCCTTGGTGTCTTCCGGGAGCTTTCC
TCCTTGCTGGCAGCATTCCTCGTCCGAGTGACACGTGGTGTTGTGCTTGG
AGCACCACTTGGTAGCTCCGGCGGGCTTCGTTTTCTTCTTCGCCCTGTTC
TTGATCTTGGGGCATTTCCTCCTGATGTGCCCCGGCTCGTAGCAGCTGTG
GCAGATGATGTCAGACGCGGTCGTTGCCATGGCAAATCCTCGACCAGCTA
TGCGTCCCTTCCATCCCTTGCGCGATTGTTCGTCCAAGAAGATGTTGCGC
ATGGTGGATTGCATGTCCAGGACGTTGAAGGTTGGGTCTCTGAACACCAT
CAGTTTGACGTCCTTGTATTCGTCGGAGAAGCCCTGTACGCAGATGTCCT
TGAAGCGGCGGTCGGAGATGGGTTCTCCGATCTTGTCCAGCTGGGCGCGA
AGTAGGTGCTTCTGGTTGCAGTAGTCGGGATTTTCACCAGGGTTCATGGA
GTTGTTCTCCAGCCCCTCCATCTTAGCCCTGATGACCTCGTCCGTTACCC
TGTCATAGTTGTTGCAGAGCTCCTCGAAGGCAGCTTGTCCGTCGCCGCTG
ATGCCAGTGTCGTCTTCGTGCTTCTGTATCGACAAGGCGGCTGGAAGTTG
CACTAGGAGGAAAAGAATGGCGTAGAGATCTTCGTCTGCCCTTGTGTAGG
AGTCGAAGGCCGCTGTGTCTGCGGGATCTGGCTTCCTTTGTTTCTTCAGC
AGTGGCAGGATGTCTTTCCTGGTCACACCACCGCGCAGAATTTCTTCATC
CATGTCTTGAACTCAGCTGGGTCCTTTCCGTCGAATTTCTTGAGGCCTTT
GATCACGGTTGCCAGGTTCGTAGAACTATCGCTGGCGAACGCGCTTCCAC
CTCCTGTGTTGCTCGTTGCAGTATCCATTGCTCGTTCCAGCTTTATTTTC
TTCGTCTTGATAAAAGTACTTCCTGCTGTAGGAGTAAGTTTGCTCGTGGT
ACTACTGCCTGTA

protein sequence of EsuBft89_16a-0001

>EsuBft89_16 ID=EsuBft89_16|Name=EsuBft89_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=87bp
MQTAFAVWVCDCFWWGTRDFVPDGWTFCSNVMSRVHMPLSRGSCVTGITL
PWIVRCEVLSSTTQRNPFFRREVGEKMLRSSPGTMSP

mRNA from alignment at Scaffold_601:364494..366202-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft89_16a-0001 ID=EsuBft89_16a-0001|Name=EsuBft89_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1709bp|location=Sequence derived from alignment at Scaffold_601:364494..366202- (Ectocarpus subulatus male Bft15b)
TGTCCAGGCTCCGAGCATTGAGATGTCCAAGCCTTCCTGTGCCAGGTGTC
CGCGCTCACTAGCGTAATGCAGACGGCGTTCGCCGTGTGGGTCTGTGACT
GCTTCTGGTGGGGCACGAGGGATTTCGTGCCAGATGGCTGGACGTTCTGC
TCGAACGTGATGTCGAGGGTGCACATGCCTTTGTCTCGCGGATCTTGTGT
GACTGGAATCACCTTGCCTTGGATAGTGAGGTGCGAAGTGCTCTCTTCGA
CGACGCAGCGCAATCCCTTCTTCAGGAGGGAGGTGGGCGAAAAAATGTTG
CGATCAAGTCCCGGAACGATGAGTCCCTGAATCCGCACGCGCAATTGCTG
TCCTCGATTGTCCTTGACGGTGCAGTATAGGATGCCCGTGGCCGTGACTT
TGAGTTGGCTTTCTCCGGCCACGTCCACGATCTTTGGAGAGTTTCGCTGG
GTGTAATCGTGGAGGTTTCCGTCGGGGATGAGGCGATTGTCAAACATGGT
CTCCGATGCTCCCGTGTCTACCAGCAGGCCTACCCCGGTGGAGCTCGCGG
CGAAGTTGCGTCCTGAGATGCGGGAACACGTGCCGAACATGAAGCCGCTG
TCAAAGGCGTCCTCGTCCCGGGTGAAGTCGACAACTGCCACTTCATTGTT
TGAGTCGTGCTTGTTGGACGCCGACGAGCAGTGAGTACAGTTGGAGCACG
CGATGAATGCCTTACTTGAGTCCTTGGTGTCTTCCGGGAGCTTTCCTCCT
TGCTGGCAGCATTCCTCGTCCGAGTGACACGTGGTGTTGTGCTTGGAGCA
CCACTTGGTAGCTCCGGCGGGCTTCGTTTTCTTCTTCGCCCTGTTCTTGA
TCTTGGGGCATTTCCTCCTGATGTGCCCCGGCTCGTAGCAGCTGTGGCAG
ATGATGTCAGACGCGGTCGTTGCCATGGCAAATCCTCGACCAGCTATGCG
TCCCTTCCATCCCTTGCGCGATTGTTCGTCCAAGAAGATGTTGCGCATGG
TGGATTGCATGTCCAGGACGTTGAAGGTTGGGTCTCTGAACACCATCAGT
TTGACGTCCTTGTATTCGTCGGAGAAGCCCTGTACGCAGATGTCCTTGAA
GCGGCGGTCGGAGATGGGTTCTCCGATCTTGTCCAGCTGGGCGCGAAGTA
GGTGCTTCTGGTTGCAGTAGTCGGGATTTTCACCAGGGTTCATGGAGTTG
TTCTCCAGCCCCTCCATCTTAGCCCTGATGACCTCGTCCGTTACCCTGTC
ATAGTTGTTGCAGAGCTCCTCGAAGGCAGCTTGTCCGTCGCCGCTGATGC
CAGTGTCGTCTTCGTGCTTCTGTATCGACAAGGCGGCTGGAAGTTGCACT
AGGAGGAAAAGAATGGCGTAGAGATCTTCGTCTGCCCTTGTGTAGGAGTC
GAAGGCCGCTGTGTCTGCGGGATCTGGCTTCCTTTGTTTCTTCAGCAGTG
GCAGGATGTCTTTCCTGGTCACACCACCGCGCAGAATTTCTTCATCCATG
TCTTGAACTCAGCTGGGTCCTTTCCGTCGAATTTCTTGAGGCCTTTGATC
ACGGTTGCCAGGTTCGTAGAACTATCGCTGGCGAACGCGCTTCCACCTCC
TGTGTTGCTCGTTGCAGTATCCATTGCTCGTTCCAGCTTTATTTTCTTCG
TCTTGATAAAAGTACTTCCTGCTGTAGGAGTAAGTTTGCTCGTGGTACTA
CTGCCTGTA

Coding sequence (CDS) from alignment at Scaffold_601:364494..366202-

>EsuBft89_16a-0001 ID=EsuBft89_16a-0001|Name=EsuBft89_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=264bp|location=Sequence derived from alignment at Scaffold_601:364494..366202- (Ectocarpus subulatus male Bft15b)
ATGCAGACGGCGTTCGCCGTGTGGGTCTGTGACTGCTTCTGGTGGGGCAC
GAGGGATTTCGTGCCAGATGGCTGGACGTTCTGCTCGAACGTGATGTCGA
GGGTGCACATGCCTTTGTCTCGCGGATCTTGTGTGACTGGAATCACCTTG
CCTTGGATAGTGAGGTGCGAAGTGCTCTCTTCGACGACGCAGCGCAATCC
CTTCTTCAGGAGGGAGGTGGGCGAAAAAATGTTGCGATCAAGTCCCGGAA
CGATGAGTCCCTGA