EsuBft89_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft89_13a-0001
Unique NameEsuBft89_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_601contigScaffold_601:329952..332578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G279
ProteomeIdEsuBft89_13
Protein domainsIPR004331
Protein domainsPTHR10783
Ownerapollo_admin@sb-roscoff.fr
Notespx domain-containing protein 1 os:oryza sativa indica gn:spx1 pe:3 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1002
Hectar predicted targeting categoryother localisation
Evalue1.28e-93
EggNOG OGsCOG5036@1|root,KOG1161@2759|Eukaryota
Ec32 ortholog descriptionSPX, N-terminal
Ec32 orthologEc-16_002150.1
Date last modified2016-06-13
Date creation2016-06-13
Descriptioncellular response to phosphate starvation
COG categoryP
Cross References
External references for this mRNA
DatabaseAccession
GO0070417
GO0005515
GO0055085
GO0005802
GO0080040
GO0000041
GO0006817
GO0015114
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft89_13aEsuBft89_13aEctocarpus subulatus male Bft15bgeneScaffold_601 329952..332578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_13a-0001EsuBft89_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_601 329952..332377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_13a-0001-exonagat-exon-15264Ectocarpus subulatus male Bft15bexonScaffold_601 329952..329966 -
EsuBft89_13a-0001-exonagat-exon-15267Ectocarpus subulatus male Bft15bexonScaffold_601 330104..330428 -
EsuBft89_13a-0001-exonagat-exon-15266Ectocarpus subulatus male Bft15bexonScaffold_601 330973..331061 -
EsuBft89_13a-0001-exonagat-exon-15265Ectocarpus subulatus male Bft15bexonScaffold_601 331584..331740 -
EsuBft89_13a-0001-exonEsuBft89_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_601 331957..332141 -
EsuBft89_13a-0001-exonagat-exon-15268Ectocarpus subulatus male Bft15bexonScaffold_601 332348..332578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_13a-0001-cdsEsuBft89_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_601 329952..329966 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft89_13a-0001-exonagat-five_prime_utr-14832Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_601 332378..332578 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft89_13a-0001 ID=EsuBft89_13a-0001|Name=EsuBft89_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1002bp|location=Sequence derived from alignment at Scaffold_601:329952..332578- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACACCCCCGGTGGGTTTTGGACTTGTTCGTGTCCAGGACGGACGTATAG
TGATTCGGACCTCCAGCGAGGCTCTAGCGATGGTCGCTGCTGCTGTTCGT
GCCAACACGGGTCGAGACCAATTGGGAACGTTTTTGCGCCGCCTCCGTGC
GAACACGGCGATGCTGGGCTCTGCACCAGATCGGCCCCGGCCCGCCGTCC
GATGTCTCCGTGCTCGCACGTACCCCTGATGGCCAGGGTGAACGAGGGGT
GGCGGCAGCTTCTCCTGCCCAACGTGGTGGTGGAGGGCAACCCGAACAAG
AGGCTCATGGCGGCGTGCGTGAAGCTGTACAAGGACTTGCTGCTGCTGGA
GAACTTCGCCATCATGAACTACTGCGGGTTCAGCAAGATCCTCAAGAAGC
ACGACAAGCTCACGGGGTTTAGGACTCGCGAGAGCTTCATGAAGAACGTC
GTGAACAACGCCCCCTTCGTGCAGTACCCGAAGGTCATCAAGATGCTCTC
CGCAGTCGAGGCGCTCTTCAAGAACATCGAGAGCCTGCCCTCGGCGAGTG
CCGAGGCGGGCACGAGGGTTCCGCTTCGAGAGGAGCAGCTGTTCATAGAC
ACGATGCTGACGATCAACACCGAGGCCTTCCGCCTGCAGCAAGCGGAAGG
GGCGGACATCGGGCTCAACACGCCGGAGTTTAGCCACAAGCGCGACGGTT
TCAGCGGGAAGCCTTCGGCGATGATTCCCAAGGGCCCCGTGCGCGCGACG
ACGACGGCGAATGCCTCCGGCGGTGGCTGCAGCGGGGGCGTAGGCGGTGC
CGGCGGCTTCCCTCGCAGCAGCGGCGCCAACGCCGCCGCAGGGAGGCTGT
TGCACATGGTGGCAGCGGCGGCGGCGCAAGTGGTATCGAGAGATTCTGAA
GGCGGGGGGGTGCAGGGGGATTCGGCGCCAGCGGTGGCCTGCGCGGAGAC
TGCGGAGGCGGCGGCGGCAGCGGCACGAAAGGGCGAGAACCCCGAGCGGT
AG
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protein sequence of EsuBft89_13a-0001

>EsuBft89_13 ID=EsuBft89_13|Name=EsuBft89_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=266bp
MSPCSHVPLMARVNEGWRQLLLPNVVVEGNPNKRLMAACVKLYKDLLLLE
NFAIMNYCGFSKILKKHDKLTGFRTRESFMKNVVNNAPFVQYPKVIKMLS
AVEALFKNIESLPSASAEAGTRVPLREEQLFIDTMLTINTEAFRLQQAEG
ADIGLNTPEFSHKRDGFSGKPSAMIPKGPVRATTTANASGGGCSGGVGGA
GGFPRSSGANAAAGRLLHMVAAAAAQVVSRDSEGGGVQGDSAPAVACAET
AEAAAAAARKGENPER
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mRNA from alignment at Scaffold_601:329952..332578-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft89_13a-0001 ID=EsuBft89_13a-0001|Name=EsuBft89_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2627bp|location=Sequence derived from alignment at Scaffold_601:329952..332578- (Ectocarpus subulatus male Bft15b)
AACACCCCCGGTGGGTTTTGGACTTGTTCGTGTCCAGGACGGACGTATAG
TGATTCGGACCTCCAGCGAGGCTCTAGCGATGGTCGCTGCTGCTGTTCGT
GCCAACACGGGTCGAGACCAATTGGGAACGTTTTTGCGCCGCCTCCGTGC
GAACACGGCGATGCTGGGCTCTGCACCAGATCGGCCCCGGCCCGCCGTCC
GATGTCTCCGTGCTCGCACGTACCCCTGATGGTACTCAACCCCACTTGGG
GGTTTCTCCCGACATCTTGTCGTCGTTGTTGGCACTCTTTGCCCCCCTTT
TTCATTTTCCGCTCTCTGCTTGACCCTCCTGTCGGCGTTCGTTTGCGAAC
GTCAAACGCCTGTTTGGTTGTTTCCTCGACATCAACGTCAACGACAAACG
ACAACAACAATGTAACGTTCAGTTGGAGGTGAGGCAGGCCAGGGTGAACG
AGGGGTGGCGGCAGCTTCTCCTGCCCAACGTGGTGGTGGAGGGCAACCCG
AACAAGAGGCTCATGGCGGCGTGCGTGAAGCTGTACAAGGACTTGCTGCT
GCTGGAGAACTTCGCCATCATGAACTACTGCGGGTTCAGCAAGATCCTCA
AGAAGCACGACAAGCTCACGGGGTGCGTCGTTTCTCCCGCCAGCGTTGGT
TGGCGCATGCACGCAACGCGCACACACATGCGCGAGCGAGCGTACACACT
CTTCTCTCACTGTCTCTCTCTCTGTTTATCTCTCTCTCTCTCTCGTCTGT
CTCTCTCTCCCTCTCCCTCTTCTTTCACGAATGGCTAATGCCCCCTCCCC
CTCTCTCCAAATCGAAACCAAACCAAACTGAAGGACAGGTTTAGGACTCG
CGAGAGCTTCATGAAGAACGTCGTGAACAACGCCCCCTTCGTGCAGTACC
CGAAGGTCATCAAGATGCTCTCCGCAGTCGAGGCGCTCTTCAAGAACATC
GAGAGCCTGCCCTCGGCGAGTGCCGAGGCGGGCACGAGGGTTCCGGTAAG
ATAAACATATAACCACAACAACGACGAACGGGGGGGGGGGGAAGGGGGGG
TTTCTTTTTATATTTTGGAATGTCCTTTTGCGGCCCCCGCGGGACGCTTC
ACACCGCGTCCCGGAGGGAGCCTTGCATTTTTTTTTTGGGAGGGGGGGGT
AAGACATGTGCAACGACGATGGCGATTCAGAAATAGACCCTTTTTGGGTG
AGTGAGTATTGAACTGATTGCTCCGAACTGCTTCAGTAGACGAGGTCATG
TTAGACCCGACTGTCCACAACAGTGGTACTGTGGTGCGCTGCATGGGTGG
GACTTCGATTCGTAGTCGTAGGTGCTAGGACAGCTCTGTCAGGGGTAGGA
AACCATACGAGGTGTACCACCTGTCTTGCAGTTGGACACCGACGCACTGA
GTTTTTCCTCGCCAGCAGCGGAATATTCACCTAACTGTCCCGGTCCCCAT
TTGCCGTCCCCGCACCTATCCCCCCGGGTGACCTTTTTTTTGGGGGGGGG
GCACGTGCGTCAAGCAGCTTCGAGAGGAGCAGCTGTTCATAGACACGATG
CTGACGATCAACACCGAGGCCTTCCGCCTGCAGCAAGCGGAAGGGGCGGA
CATCGGGTGAGGGGGAGGCCGCCGCCCGCGCTGTCTTTTTGTTTGTTTGC
TTGGCTTGCGGGTGCTGCTTGGATCGAGGTCGCCCGCACGTGTGCTCGCT
TAGCCTTGTGTGGCTACTACCTTTGCTTCACTGATGTTTGTCAAGATGCG
CGTAGTGTGTGTGAGAATGCTCCTGCTGCGCTGCTTGATCCCACACGTCA
TTTCGTGGGTCGCCCTACCTGTGCGTGCTCGCCGTTACCTGGCTCGTGAA
AAGCTCGTCGGTTCTGTCGTTTTGGCCATTTTTTTTTTTTCAACTCTGCT
GGTTTGTGCTTGTTTTCCCTCTCCTTTGCTGCCACTCTTGTGTCGAGTGT
GTTTGTGCATATTTTTTCTCCTAACAAGTCCCGACGTCTCGAGCGAAGAA
TCGACCGACCGGGACACCGACGCCGTGCCCCCGTCGTGTGCGCGGTGTGC
AACCGGACCGCCGCGCGCTTGTTTTCCTTTGCCACGCTCTCTCTTTGTCA
ACAACCGATCGATCGAAACATCCCCCCCACCGCATCACCAATCGCCAAAG
GCTCAACACGCCGGAGTTTAGCCACAAGCGCGACGGTTTCAGCGGGAAGC
CTTCGGCGATGATTCCCAAGGGCCCCGTGCGCGCGACGACGACGGCGAAT
GCCTCCGGCGGTGGCTGCAGCGGGGGCGTAGGCGGTGCCGGCGGCTTCCC
TCGCAGCAGCGGCGCCAACGCCGCCGCAGGGAGGCTGTTGCACATGGTGG
CAGCGGCGGCGGCGCAAGTGGTATCGAGAGATTCTGAAGGCGGGGGGGTG
CAGGGGGATTCGGCGCCAGCGGTGGCCTGCGCGGAGACTGCGGAGGCGGC
GGCGGCAGCGGCACGAAAGGGCGAGGTAAGCACGTGCGTGGAGGGCATCA
TCCGCATATTACGTCGTGACTGTGAGGGAGGAGGCGCTTGAGTTTGCTGG
GATTCGTTTTGTGGCCTGGATTATCAAAAGAGTGCGGGGATATGTTACCC
GCCCTTGAATAGAACCCCGAGCGGTAG
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Coding sequence (CDS) from alignment at Scaffold_601:329952..332578-

>EsuBft89_13a-0001 ID=EsuBft89_13a-0001|Name=EsuBft89_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=801bp|location=Sequence derived from alignment at Scaffold_601:329952..332578- (Ectocarpus subulatus male Bft15b)
ATGTCTCCGTGCTCGCACGTACCCCTGATGGCCAGGGTGAACGAGGGGTG
GCGGCAGCTTCTCCTGCCCAACGTGGTGGTGGAGGGCAACCCGAACAAGA
GGCTCATGGCGGCGTGCGTGAAGCTGTACAAGGACTTGCTGCTGCTGGAG
AACTTCGCCATCATGAACTACTGCGGGTTCAGCAAGATCCTCAAGAAGCA
CGACAAGCTCACGGGGTTTAGGACTCGCGAGAGCTTCATGAAGAACGTCG
TGAACAACGCCCCCTTCGTGCAGTACCCGAAGGTCATCAAGATGCTCTCC
GCAGTCGAGGCGCTCTTCAAGAACATCGAGAGCCTGCCCTCGGCGAGTGC
CGAGGCGGGCACGAGGGTTCCGCTTCGAGAGGAGCAGCTGTTCATAGACA
CGATGCTGACGATCAACACCGAGGCCTTCCGCCTGCAGCAAGCGGAAGGG
GCGGACATCGGGCTCAACACGCCGGAGTTTAGCCACAAGCGCGACGGTTT
CAGCGGGAAGCCTTCGGCGATGATTCCCAAGGGCCCCGTGCGCGCGACGA
CGACGGCGAATGCCTCCGGCGGTGGCTGCAGCGGGGGCGTAGGCGGTGCC
GGCGGCTTCCCTCGCAGCAGCGGCGCCAACGCCGCCGCAGGGAGGCTGTT
GCACATGGTGGCAGCGGCGGCGGCGCAAGTGGTATCGAGAGATTCTGAAG
GCGGGGGGGTGCAGGGGGATTCGGCGCCAGCGGTGGCCTGCGCGGAGACT
GCGGAGGCGGCGGCGGCAGCGGCACGAAAGGGCGAGAACCCCGAGCGGTA
G
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