EsuBft899_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft899_8a-0001
Unique Name	EsuBft899_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_324	contig	Scaffold_324:87321..88536 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	67593.Physo133508
ProteomeId	EsuBft899_8
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	1
Max annot lvl	4776\|Peronosporales
Length	1125
Hectar predicted targeting category	other localisation
Evalue	1.07e-22
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QHHC@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft899_8a	EsuBft899_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_324 87321..88536 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_8a-0001-exon	agat-exon-38238	Ectocarpus subulatus male Bft15b	exon	Scaffold_324 87321..88329 +
EsuBft899_8a-0001-exon	EsuBft899_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_324 88421..88536 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_8a-0001-cds	EsuBft899_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_324 87321..87716 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_8a-0001-exon	agat-three_prime_utr-22870	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_324 87717..88329 +
EsuBft899_8a-0001-exon	agat-three_prime_utr-22871	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_324 88421..88536 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_8a-0001	EsuBft899_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_324 87321..87716 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_324:87321..88536+
coding sequence from alignment at Scaffold_324:87321..88536+

spliced messenger RNA

>EsuBft899_8a-0001 ID=EsuBft899_8a-0001|Name=EsuBft899_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1125bp|location=Sequence derived from alignment at Scaffold_324:87321..88536+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCTGGTGCCTGTGTGATTTATCTGTGTAGGACGCAGAAGAGCGT
CACCCTGTCTTCGACGGAAGCGGAGTACGTGGCGATGTCTGATGGGATGA
AGGAGGCTATTTTTCTGCGATATCTGTGGAAAATTATCTTTCCGGGCTGT
GATGTGGGGTGCACTCCGGTGTGGGAGGACAACGTAGGCGCTATTCACTT
GGCAAGTAACCCGGCTACTACTCCCAACTCGAAGCACATCGACATCCGCC
ACCATTTCATCCGTGAGCGTGTAGCACGGGGGGAGTTCAAGGTAGTCCAC
GTACGGTCGGACCTGCAACGCGCGGATTTCTTGACCAAACCGCTCCCCAA
GGAGACTTTTTGCGCTCATCGTGACTTCGTGATGAATATTCGTTGATTTT
GTTCTTTGTGTTGCGCTATTTCAGCGATGGGGCCTTTCTTGCATCATGTG
TTTTATTTGTGACCTGGTACTGGCCTTTGATCTGCTGCTCGATGTTGATT
TCTGCTTTCGCGATGGATGGGATAGTTCTGCGTGAGAATCATGGGGGGGG
AAGTATTGTTCCATGATCCTAGTCGCAGGTGGTTTGTCTTGGTTTTGATT
TTTTTCGGGATGAATGATGCAGCAGGGGGGCTGTTGGATTGATTGATTGG
ATTGATTTTGACTTCATGTTCAGGATGGAATGGATGTTACAGCAGGGGGG
CTGGTGGAGTGGTTTCTTTGTCAAGGTATTGGATGTCGGAGAGAGGGTTT
GGCATGTTCTTGTAATATGAACTGGCAATTGAGTTGAAACATGAATATTT
ATCTGAGGAATGAATTTGTTCTGAATAGTCAGGACGTAAGACACGTTTTC
CCGGAGTTATCGTCCTCCCCGTTCTGACGTGATTCTGATGTAATGTTGAT
CTTTTTGCTGGGTATTTTTCCAAGGGTGATTGTTCGTGTTTTGACTGCTT
GAGAATTGGGTAGAGCACTTTTCTCGAGAGGGTGATTTGTTTTTCTTGAC
AGACCTTNGACCTTTCAGGGGTAGAAATTTGACATCAAAAAGGTTTGAAA
GCTTTGCAGGACGTGTCCTGTTGGAAGATCCGGCGATTTCGTGGGACATG
TTCTATTGGCAGAGTCGTTTGGATT

protein sequence of EsuBft899_8a-0001

>EsuBft899_8 ID=EsuBft899_8|Name=EsuBft899_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MFAGACVIYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKIIFPGC
DVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVH
VRSDLQRADFLTKPLPKETFCAHRDFVMNIR

mRNA from alignment at Scaffold_324:87321..88536+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft899_8a-0001 ID=EsuBft899_8a-0001|Name=EsuBft899_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1216bp|location=Sequence derived from alignment at Scaffold_324:87321..88536+ (Ectocarpus subulatus male Bft15b)
ATGTTCGCTGGTGCCTGTGTGATTTATCTGTGTAGGACGCAGAAGAGCGT
CACCCTGTCTTCGACGGAAGCGGAGTACGTGGCGATGTCTGATGGGATGA
AGGAGGCTATTTTTCTGCGATATCTGTGGAAAATTATCTTTCCGGGCTGT
GATGTGGGGTGCACTCCGGTGTGGGAGGACAACGTAGGCGCTATTCACTT
GGCAAGTAACCCGGCTACTACTCCCAACTCGAAGCACATCGACATCCGCC
ACCATTTCATCCGTGAGCGTGTAGCACGGGGGGAGTTCAAGGTAGTCCAC
GTACGGTCGGACCTGCAACGCGCGGATTTCTTGACCAAACCGCTCCCCAA
GGAGACTTTTTGCGCTCATCGTGACTTCGTGATGAATATTCGTTGATTTT
GTTCTTTGTGTTGCGCTATTTCAGCGATGGGGCCTTTCTTGCATCATGTG
TTTTATTTGTGACCTGGTACTGGCCTTTGATCTGCTGCTCGATGTTGATT
TCTGCTTTCGCGATGGATGGGATAGTTCTGCGTGAGAATCATGGGGGGGG
AAGTATTGTTCCATGATCCTAGTCGCAGGTGGTTTGTCTTGGTTTTGATT
TTTTTCGGGATGAATGATGCAGCAGGGGGGCTGTTGGATTGATTGATTGG
ATTGATTTTGACTTCATGTTCAGGATGGAATGGATGTTACAGCAGGGGGG
CTGGTGGAGTGGTTTCTTTGTCAAGGTATTGGATGTCGGAGAGAGGGTTT
GGCATGTTCTTGTAATATGAACTGGCAATTGAGTTGAAACATGAATATTT
ATCTGAGGAATGAATTTGTTCTGAATAGTCAGGACGTAAGACACGTTTTC
CCGGAGTTATCGTCCTCCCCGTTCTGACGTGATTCTGATGTAATGTTGAT
CTTTTTGCTGGGTATTTTTCCAAGGGTGATTGTTCGTGTTTTGACTGCTT
GAGAATTGGGTAGAGCACTTTTCTCGAGAGGGTGATTTGTTTTTCTTGAC
AGACCTTNGGTATTTTTCCAAGGGTGATTGTTCGTGTTTTGACTGCTTGA
GAATTGGGTAGAGCACTTTCCTCGAGAGGATGATTTGTTTCTCTTGACAG
ACCTTTCAGGGGTAGAAATTTGACATCAAAAAGGTTTGAAAGCTTTGCAG
GACGTGTCCTGTTGGAAGATCCGGCGATTTCGTGGGACATGTTCTATTGG
CAGAGTCGTTTGGATT

Coding sequence (CDS) from alignment at Scaffold_324:87321..88536+

>EsuBft899_8a-0001 ID=EsuBft899_8a-0001|Name=EsuBft899_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_324:87321..88536+ (Ectocarpus subulatus male Bft15b)
ATGTTCGCTGGTGCCTGTGTGATTTATCTGTGTAGGACGCAGAAGAGCGT
CACCCTGTCTTCGACGGAAGCGGAGTACGTGGCGATGTCTGATGGGATGA
AGGAGGCTATTTTTCTGCGATATCTGTGGAAAATTATCTTTCCGGGCTGT
GATGTGGGGTGCACTCCGGTGTGGGAGGACAACGTAGGCGCTATTCACTT
GGCAAGTAACCCGGCTACTACTCCCAACTCGAAGCACATCGACATCCGCC
ACCATTTCATCCGTGAGCGTGTAGCACGGGGGGAGTTCAAGGTAGTCCAC
GTACGGTCGGACCTGCAACGCGCGGATTTCTTGACCAAACCGCTCCCCAA
GGAGACTTTTTGCGCTCATCGTGACTTCGTGATGAATATTCGTTGA