EsuBft899_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft899_7a-0001
Unique Name	EsuBft899_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_324	contig	Scaffold_324:68362..70061 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4558.Sb07g028153.1
ProteomeId	EsuBft899_7
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	1700
Hectar predicted targeting category	other localisation
Evalue	6.31e-36
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M2QC@4447\|Liliopsida,3IMWS@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	GAG-pre-integrase domain
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft899_7a	EsuBft899_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_324 68362..70061 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_7a-0001-exon	EsuBft899_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_324 68362..70061 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_7a-0001-cds	EsuBft899_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_324 68362..70026 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_7a-0001-exon	agat-five_prime_utr-14824	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_324 70027..70061 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_7a-0001	EsuBft899_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_324 68362..70026 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_324:68362..70061-
coding sequence from alignment at Scaffold_324:68362..70061-

spliced messenger RNA

>EsuBft899_7a-0001 ID=EsuBft899_7a-0001|Name=EsuBft899_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1700bp|location=Sequence derived from alignment at Scaffold_324:68362..70061- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTTCCGCGCTGGTGGATTCTGGAGCTTCTGAAACCATGTTCGACGACCGC
CTCATCCCGAATGGACGTCTCGAAGAAGAACGCCCGACGCCCAAGATCAT
CGACGTTGCAGGAGAAAGCCAACTACGAGGCACTACCACTGGGATCCTAC
ACTGCACCATCAAAGACGACAAAGAACAGCAACTACCCGTCAAGCTACAA
GGTCTCATCGTGCCAGGACTAGGCCGGAACATCTTCGCACCAACGGCCCT
TCTCAAGAAGGGCCTCCGATGTGTCCTGGAAGACAAGACCCCACACCTCA
CCATCGGCGGAGAAGTCGTCGTTCCTCTGAAACAAGAGACTCAAGACCAA
GGCATGTGCACCCTCGCCATCACATTCAAGGGCGATCCAGCGTCCAAGCA
AGACACGCCCGAACAACCAAGAACCAGGGCGCAAGCCGAAGTTCGGAAAA
CCAGAAGCGGTACAGATCGATCACACTCCGCACGCGACATGCTCAGTGGC
GATGAGCGTGAGCGCCGACCTCTGGCACCGGCGCCTCGGCCACATCAATC
CAAGTGCTATGGAATTTTGCGGCGCAACCCCGCTACAGGTGTGAAATATG
ACGGACCGGTATCCCCGTGCGACAACTGCCACATCACGAAGCACAAGAAG
CCTCCCGTCCCGAAGAAGACCAGCCGTGTCCTGACCAAACCAGGCCAACT
CGTCCAGTTCGACAACATGGGACCAATCGACCCGCCTGCGAAGTACAACG
GACGCACCTACTCCTATGTCGCCAAAGCGACCGACGTCTTCACCAGAATG
CGGGAAGTGTACCTACTGCGCGACAGGACCGAAACCACGCAAGCTCTGCA
CGCCTACAATATGCAAGTAGCATCTGAAGGCTACCGCATTGAGATTCTAC
GCTGTGACAAAGGGGGAGAGAACACTGGGGAAGAAATGCGCAACTACTGT
AGGGAGTCTGCGATCAAGCTGGAATTCGCCGCGACCAACACGCCCCAAGA
AATCGGAGTGTCAGAAAGGGATGGCCAGACACTTGCGGCTGTGACTCGAG
CTCTACTGCGCGATGGAGACTTCCCAAAACACATGTGGGGGGAGCTCATG
ATGACTGCAGCATACCTGACCAACAGGACCCCACACGCGGCGCTAGGGGG
AGCCACGCCGTATTCCAAGATGTACAACACAACCCCGGACCTTTCTCGAC
TTCGTGCCATCGGCGCCCGCGCGTTCGTTCATCACGAGCGATACAAGAAG
AAGCTAGACGACCGGGCCTTTGAAGGCAAGCTCTGCGGTTACGGACCTGA
CAGCAAGACGTACCGGATCTACGTGGAGGGCAAAGACAAGGTCTACGAGA
GCCGGAACGTGACTTTCATCGAGACTCCACCCAACACCATCCCCCCTCAC
CGGTGGGACGACCGTCTCGGATATGAACAGGACGTGATGAACTTCACGTC
ATTGCTCGGACGCCGTACCTCTACGGGCGACGAAGACAACAAAGTGGACT
ACGGAACACAATCAGAGCTCCTGCTGCACGAGATGCGCAACATGCAGCAA
GACAACATCAACCGAGCAGAACTTCGCCAAAACAACGCGGGCACGGATTC
CGACGACTACTTTGCTGTTGGGAGAGATTACAGCAATAACAACTCGCGGA
CTACGACACCACCAGGACATCGCAAGGACCCTACGCGAGAAATATCGTAA

protein sequence of EsuBft899_7a-0001

>EsuBft899_7 ID=EsuBft899_7|Name=EsuBft899_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=554bp
MFDDRLIPNGRLEEERPTPKIIDVAGESQLRGTTTGILHCTIKDDKEQQL
PVKLQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQ
ETQDQGMCTLAITFKGDPASKQDTPEQPRTRAQAEVRKTRSGTDRSHSAR
DMLSGDERERRPLAPAPRPHQSKCYGILRRNPATGVKYDGPVSPCDNCHI
TKHKKPPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATD
VFTRMREVYLLRDRTETTQALHAYNMQVASEGYRIEILRCDKGGENTGEE
MRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHM
WGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHH
ERYKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIETPPN
TIPPHRWDDRLGYEQDVMNFTSLLGRRTSTGDEDNKVDYGTQSELLLHEM
RNMQQDNINRAELRQNNAGTDSDDYFAVGRDYSNNNSRTTTPPGHRKDPT
REIS

mRNA from alignment at Scaffold_324:68362..70061-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft899_7a-0001 ID=EsuBft899_7a-0001|Name=EsuBft899_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1700bp|location=Sequence derived from alignment at Scaffold_324:68362..70061- (Ectocarpus subulatus male Bft15b)
CTTCCGCGCTGGTGGATTCTGGAGCTTCTGAAACCATGTTCGACGACCGC
CTCATCCCGAATGGACGTCTCGAAGAAGAACGCCCGACGCCCAAGATCAT
CGACGTTGCAGGAGAAAGCCAACTACGAGGCACTACCACTGGGATCCTAC
ACTGCACCATCAAAGACGACAAAGAACAGCAACTACCCGTCAAGCTACAA
GGTCTCATCGTGCCAGGACTAGGCCGGAACATCTTCGCACCAACGGCCCT
TCTCAAGAAGGGCCTCCGATGTGTCCTGGAAGACAAGACCCCACACCTCA
CCATCGGCGGAGAAGTCGTCGTTCCTCTGAAACAAGAGACTCAAGACCAA
GGCATGTGCACCCTCGCCATCACATTCAAGGGCGATCCAGCGTCCAAGCA
AGACACGCCCGAACAACCAAGAACCAGGGCGCAAGCCGAAGTTCGGAAAA
CCAGAAGCGGTACAGATCGATCACACTCCGCACGCGACATGCTCAGTGGC
GATGAGCGTGAGCGCCGACCTCTGGCACCGGCGCCTCGGCCACATCAATC
CAAGTGCTATGGAATTTTGCGGCGCAACCCCGCTACAGGTGTGAAATATG
ACGGACCGGTATCCCCGTGCGACAACTGCCACATCACGAAGCACAAGAAG
CCTCCCGTCCCGAAGAAGACCAGCCGTGTCCTGACCAAACCAGGCCAACT
CGTCCAGTTCGACAACATGGGACCAATCGACCCGCCTGCGAAGTACAACG
GACGCACCTACTCCTATGTCGCCAAAGCGACCGACGTCTTCACCAGAATG
CGGGAAGTGTACCTACTGCGCGACAGGACCGAAACCACGCAAGCTCTGCA
CGCCTACAATATGCAAGTAGCATCTGAAGGCTACCGCATTGAGATTCTAC
GCTGTGACAAAGGGGGAGAGAACACTGGGGAAGAAATGCGCAACTACTGT
AGGGAGTCTGCGATCAAGCTGGAATTCGCCGCGACCAACACGCCCCAAGA
AATCGGAGTGTCAGAAAGGGATGGCCAGACACTTGCGGCTGTGACTCGAG
CTCTACTGCGCGATGGAGACTTCCCAAAACACATGTGGGGGGAGCTCATG
ATGACTGCAGCATACCTGACCAACAGGACCCCACACGCGGCGCTAGGGGG
AGCCACGCCGTATTCCAAGATGTACAACACAACCCCGGACCTTTCTCGAC
TTCGTGCCATCGGCGCCCGCGCGTTCGTTCATCACGAGCGATACAAGAAG
AAGCTAGACGACCGGGCCTTTGAAGGCAAGCTCTGCGGTTACGGACCTGA
CAGCAAGACGTACCGGATCTACGTGGAGGGCAAAGACAAGGTCTACGAGA
GCCGGAACGTGACTTTCATCGAGACTCCACCCAACACCATCCCCCCTCAC
CGGTGGGACGACCGTCTCGGATATGAACAGGACGTGATGAACTTCACGTC
ATTGCTCGGACGCCGTACCTCTACGGGCGACGAAGACAACAAAGTGGACT
ACGGAACACAATCAGAGCTCCTGCTGCACGAGATGCGCAACATGCAGCAA
GACAACATCAACCGAGCAGAACTTCGCCAAAACAACGCGGGCACGGATTC
CGACGACTACTTTGCTGTTGGGAGAGATTACAGCAATAACAACTCGCGGA
CTACGACACCACCAGGACATCGCAAGGACCCTACGCGAGAAATATCGTAA

Coding sequence (CDS) from alignment at Scaffold_324:68362..70061-

>EsuBft899_7a-0001 ID=EsuBft899_7a-0001|Name=EsuBft899_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1665bp|location=Sequence derived from alignment at Scaffold_324:68362..70061- (Ectocarpus subulatus male Bft15b)
ATGTTCGACGACCGCCTCATCCCGAATGGACGTCTCGAAGAAGAACGCCC
GACGCCCAAGATCATCGACGTTGCAGGAGAAAGCCAACTACGAGGCACTA
CCACTGGGATCCTACACTGCACCATCAAAGACGACAAAGAACAGCAACTA
CCCGTCAAGCTACAAGGTCTCATCGTGCCAGGACTAGGCCGGAACATCTT
CGCACCAACGGCCCTTCTCAAGAAGGGCCTCCGATGTGTCCTGGAAGACA
AGACCCCACACCTCACCATCGGCGGAGAAGTCGTCGTTCCTCTGAAACAA
GAGACTCAAGACCAAGGCATGTGCACCCTCGCCATCACATTCAAGGGCGA
TCCAGCGTCCAAGCAAGACACGCCCGAACAACCAAGAACCAGGGCGCAAG
CCGAAGTTCGGAAAACCAGAAGCGGTACAGATCGATCACACTCCGCACGC
GACATGCTCAGTGGCGATGAGCGTGAGCGCCGACCTCTGGCACCGGCGCC
TCGGCCACATCAATCCAAGTGCTATGGAATTTTGCGGCGCAACCCCGCTA
CAGGTGTGAAATATGACGGACCGGTATCCCCGTGCGACAACTGCCACATC
ACGAAGCACAAGAAGCCTCCCGTCCCGAAGAAGACCAGCCGTGTCCTGAC
CAAACCAGGCCAACTCGTCCAGTTCGACAACATGGGACCAATCGACCCGC
CTGCGAAGTACAACGGACGCACCTACTCCTATGTCGCCAAAGCGACCGAC
GTCTTCACCAGAATGCGGGAAGTGTACCTACTGCGCGACAGGACCGAAAC
CACGCAAGCTCTGCACGCCTACAATATGCAAGTAGCATCTGAAGGCTACC
GCATTGAGATTCTACGCTGTGACAAAGGGGGAGAGAACACTGGGGAAGAA
ATGCGCAACTACTGTAGGGAGTCTGCGATCAAGCTGGAATTCGCCGCGAC
CAACACGCCCCAAGAAATCGGAGTGTCAGAAAGGGATGGCCAGACACTTG
CGGCTGTGACTCGAGCTCTACTGCGCGATGGAGACTTCCCAAAACACATG
TGGGGGGAGCTCATGATGACTGCAGCATACCTGACCAACAGGACCCCACA
CGCGGCGCTAGGGGGAGCCACGCCGTATTCCAAGATGTACAACACAACCC
CGGACCTTTCTCGACTTCGTGCCATCGGCGCCCGCGCGTTCGTTCATCAC
GAGCGATACAAGAAGAAGCTAGACGACCGGGCCTTTGAAGGCAAGCTCTG
CGGTTACGGACCTGACAGCAAGACGTACCGGATCTACGTGGAGGGCAAAG
ACAAGGTCTACGAGAGCCGGAACGTGACTTTCATCGAGACTCCACCCAAC
ACCATCCCCCCTCACCGGTGGGACGACCGTCTCGGATATGAACAGGACGT
GATGAACTTCACGTCATTGCTCGGACGCCGTACCTCTACGGGCGACGAAG
ACAACAAAGTGGACTACGGAACACAATCAGAGCTCCTGCTGCACGAGATG
CGCAACATGCAGCAAGACAACATCAACCGAGCAGAACTTCGCCAAAACAA
CGCGGGCACGGATTCCGACGACTACTTTGCTGTTGGGAGAGATTACAGCA
ATAACAACTCGCGGACTACGACACCACCAGGACATCGCAAGGACCCTACG
CGAGAAATATCGTAA