EsuBft899_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft899_5a-0001
Unique NameEsuBft899_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_324contigScaffold_324:58050..60057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog946362.XP_004988914.1
ProteomeIdEsuBft899_5
Protein domainsSSF56672
Protein domainsPTHR10178
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon opus os:drosophila melanogaster gn:pol pe:3 [Automatic annotation]
Nb exon4
Max annot lvl33154|Opisthokonta
Length1191
Hectar predicted targeting categoryother localisation
Evalue1.4e-48
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta
Date last modified2016-06-14
Date creation2016-06-14
Descriptionretrotransposable element Tf2 155 kDa protein type 1-like
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft899_5aEsuBft899_5aEctocarpus subulatus male Bft15bgeneScaffold_324 58050..60057 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft899_5a-0001-exonEsuBft899_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_324 58050..58141 -
EsuBft899_5a-0001-exonagat-exon-38234Ectocarpus subulatus male Bft15bexonScaffold_324 58785..59348 -
EsuBft899_5a-0001-exonagat-exon-38235Ectocarpus subulatus male Bft15bexonScaffold_324 59392..59708 -
EsuBft899_5a-0001-exonagat-exon-38233Ectocarpus subulatus male Bft15bexonScaffold_324 59840..60057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft899_5a-0001-cdsEsuBft899_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_324 58050..58141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft899_5a-0001EsuBft899_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_324 58050..60057 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft899_5a-0001 ID=EsuBft899_5a-0001|Name=EsuBft899_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1191bp|location=Sequence derived from alignment at Scaffold_324:58050..60057- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGAAAGTGGACGAAGTTTTGGATCAATATTTGGCGGCTGGGCT
TATTCAGCATCCCACCTCTCCTTGGGCCTCTCCTTTAGTGGTCATCCCCA
AGAAGGATGGCTCGGTTCGCATCACCGTCAACTACAAGCGCCTTAATGCA
CTGGTGGATTTAGACGGACAGCCTCTTCTGCGCGTGGACGGCATTGTGAA
CTCTTTGTACACAGGGGGGAGCCCTTCGTGGTTCGTGAAGGTCATCAAGC
GTGTGGTGCAAGGTCTGGACCGCGTCGTGGCGTATTTGGACGATGTTACT
TGCTTTGACGAGGAACCTTTGGAGCATGTGCGTAACATGATTGAGTTTTT
CAAAAGCCTACGACAGTACAAACCTCAAGCTGTCTCCAGGGAAGGCCGTG
TCGGAGTTAGTCACGCCAATTTCCTGGGCCACACCATCTCCCAAGCCGGC
GTTAGTCCGGATGGTGACAAGGTCCGGGCGCTCACGAAGATGCCACCGCC
GGCGAATGTCAAGCAACTTCGGAGTCTCCTAGGTGGACCGCTCAACGCCC
TTCTTAAACAAGGCGTTCAGTGTAAGTACACCTCGAGCATGGTCACGACG
GTTAAATCCCTTCTCCACGACGTTTTCCTCCCCTCGATTTTGGTTTTCCC
TGATTGGGATGCGGTTGAAGACAACAGTCGCCCTCTCCGTTTGTGCTCAG
ATGCCTGTATAGACGGGTTTGGCGCTACTCTAGAGCAAGAACAGCAGTTG
GATGGCACTGTGCGGCCTATTGTGTACATTAGCCGCGCTACTGTCCCTGC
CGAACGCAATTGGACCGTTTTGGATTTGGAGGCTAGTAGCATTGTCTGGG
CTACTAAACGGCTTCGCGGATACCTTTGGTCGACCAAGATTGTCATTCAT
TCCGATCACAAGGCTTTGAAAAGCATTGGCAAGGTTGACGAACACAATGC
TCGTGTGCAACGTTGGTTGGAGTTTTTGTCCAACTTCACATACACTTTGG
AGTACAGGAAAGGTTCGGCGAATGGCAATGCGGATTTCATTTCGCGACTG
CCGTTGCCAGCGAGAGAGGAGGACAAGACCGGTCCTGACAGCATCGACGA
CGACCAAGACAGCTGGGACTACTACCCGCTGGTCTGGGACTCCCGCGACG
CCTACATCGGCGCCTTCGTCATGCTTCGGTACCGCCGGTGA
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protein sequence of EsuBft899_5a-0001

>EsuBft899_5 ID=EsuBft899_5|Name=EsuBft899_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=396bp
MQKKVDEVLDQYLAAGLIQHPTSPWASPLVVIPKKDGSVRITVNYKRLNA
LVDLDGQPLLRVDGIVNSLYTGGSPSWFVKVIKRVVQGLDRVVAYLDDVT
CFDEEPLEHVRNMIEFFKSLRQYKPQAVSREGRVGVSHANFLGHTISQAG
VSPDGDKVRALTKMPPPANVKQLRSLLGGPLNALLKQGVQCKYTSSMVTT
VKSLLHDVFLPSILVFPDWDAVEDNSRPLRLCSDACIDGFGATLEQEQQL
DGTVRPIVYISRATVPAERNWTVLDLEASSIVWATKRLRGYLWSTKIVIH
SDHKALKSIGKVDEHNARVQRWLEFLSNFTYTLEYRKGSANGNADFISRL
PLPAREEDKTGPDSIDDDQDSWDYYPLVWDSRDAYIGAFVMLRYRR
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mRNA from alignment at Scaffold_324:58050..60057-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft899_5a-0001 ID=EsuBft899_5a-0001|Name=EsuBft899_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2008bp|location=Sequence derived from alignment at Scaffold_324:58050..60057- (Ectocarpus subulatus male Bft15b)
ATGCAGAAGAAAGTGGACGAAGTTTTGGATCAATATTTGGCGGCTGGGCT
TATTCAGCATCCCACCTCTCCTTGGGCCTCTCCTTTAGTGGTCATCCCCA
AGAAGGATGGCTCGGTTCGCATCACCGTCAACTACAAGCGCCTTAATGCA
CTGGTGGATTTAGACGGACAGCCTCTTCTGCGCGTGGACGGCATTGTGAA
CTCTTTGTACACAGGGGGGTATTTTCCACCTTTGATCTTAACTCTGCCTT
TCACCAGATTGTGTGCGACGAGGAGACCGTGCCTCTCACAGCCTTTTGCA
CGCCTACACAGCGCTTTGAGTGGCTGCGAATGACGCAAGGAGCTAACAGG
AGCCCTTCGTGGTTCGTGAAGGTCATCAAGCGTGTGGTGCAAGGTCTGGA
CCGCGTCGTGGCGTATTTGGACGATGTTACTTGCTTTGACGAGGAACCTT
TGGAGCATGTGCGTAACATGATTGAGTTTTTCAAAAGCCTACGACAGTAC
AAACCTCAAGCTGTCTCCAGGGAAGGCCGTGTCGGAGTTAGTCACGCCAA
TTTCCTGGGCCACACCATCTCCCAAGCCGGCGTTAGTCCGGATGGTGACA
AGGTCCGGGCGCTCACGAAGATGCCACCGCCGGCGAATGTCAAGCAACTT
CGGAGTCTCCTAGGTGGTTCAAGCAACGGAATTTCTGAAGAATCTTGCCA
CCAAGGTAGGACCGCTCAACGCCCTTCTTAAACAAGGCGTTCAGTGTAAG
TACACCTCGAGCATGGTCACGACGGTTAAATCCCTTCTCCACGACGTTTT
CCTCCCCTCGATTTTGGTTTTCCCTGATTGGGATGCGGTTGAAGACAACA
GTCGCCCTCTCCGTTTGTGCTCAGATGCCTGTATAGACGGGTTTGGCGCT
ACTCTAGAGCAAGAACAGCAGTTGGATGGCACTGTGCGGCCTATTGTGTA
CATTAGCCGCGCTACTGTCCCTGCCGAACGCAATTGGACCGTTTTGGATT
TGGAGGCTAGTAGCATTGTCTGGGCTACTAAACGGCTTCGCGGATACCTT
TGGTCGACCAAGATTGTCATTCATTCCGATCACAAGGCTTTGAAAAGCAT
TGGCAAGGTTGACGAACACAATGCTCGTGTGCAACGTTGGTTGGAGTTTT
TGTCCAACTTCACATACACTTTGGAGTACAGGAAAGGTTCGGCGAATGGC
AATGCGGATTTCATTTCGCGACTGCCGTTGCCAGCGAGAGAGGAGGACAA
GACCGGTCCTGACAGCATCGACGGTATTGACCAAGCGGGTGTTTTTCTTT
TCTGGGCTTGCGGGTTCACCTATCATTCGTCTTCTACACCGGAGGTCGGT
TTNTCATTTCGCGACTGCCGTTGCCAGCGAGAGAGGAGGACAAGACCGGT
CCTGACAGCATCGACGGTATTGACCAAGCGGGTGTTTTTCTTTTCTGGGC
TTGCGGGTTCACCTATCATTCGTCTTCTACACCGGAGGTCGGTTTGGGTG
GGCTCCGCCCTCCTTGTTCCGATAGCGTTTTTCCACCCTCTGCGTTGGAA
GATTCGGACTTTGGAGATTTTCGAAGACATGGACCACGCATGGACGAGCT
TGCATTTTCGCCTCCTTCTGGAAACGATTGCAGGAGTTCTCCGGGAGTTT
TCGCGGTTTTGCCCGCTTCTGGAGATGCTGTGCCTGTTTCTGCGTCTCCT
TTCGTACCTATCAAGTCGCATTGTCCACGCCGGCATGTCCACGTTTTGTC
TTCGTTGCCGGAACAAAGACCCCTTGTTTCTTCGAGGACTAGGGCCAAGA
GTTCAGCTGCGTCAGGTTCTCCTGTCGCTGGCCCCACATACTTTAGGCAA
CAGCCAAGGGCTACTGTAGGCCCTCGTGCTTTGTCGCCTGCTCGTCGCCA
TAGCAGGTCTCGTCAGACGACCAAGACAGCTGGGACTACTACCCGCTGGT
CTGGGACTCCCGCGACGCCTACATCGGCGCCTTCGTCATGCTTCGGTACC
GCCGGTGA
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Coding sequence (CDS) from alignment at Scaffold_324:58050..60057-

>EsuBft899_5a-0001 ID=EsuBft899_5a-0001|Name=EsuBft899_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1191bp|location=Sequence derived from alignment at Scaffold_324:58050..60057- (Ectocarpus subulatus male Bft15b)
ATGCAGAAGAAAGTGGACGAAGTTTTGGATCAATATTTGGCGGCTGGGCT
TATTCAGCATCCCACCTCTCCTTGGGCCTCTCCTTTAGTGGTCATCCCCA
AGAAGGATGGCTCGGTTCGCATCACCGTCAACTACAAGCGCCTTAATGCA
CTGGTGGATTTAGACGGACAGCCTCTTCTGCGCGTGGACGGCATTGTGAA
CTCTTTGTACACAGGGGGGAGCCCTTCGTGGTTCGTGAAGGTCATCAAGC
GTGTGGTGCAAGGTCTGGACCGCGTCGTGGCGTATTTGGACGATGTTACT
TGCTTTGACGAGGAACCTTTGGAGCATGTGCGTAACATGATTGAGTTTTT
CAAAAGCCTACGACAGTACAAACCTCAAGCTGTCTCCAGGGAAGGCCGTG
TCGGAGTTAGTCACGCCAATTTCCTGGGCCACACCATCTCCCAAGCCGGC
GTTAGTCCGGATGGTGACAAGGTCCGGGCGCTCACGAAGATGCCACCGCC
GGCGAATGTCAAGCAACTTCGGAGTCTCCTAGGTGGACCGCTCAACGCCC
TTCTTAAACAAGGCGTTCAGTGTAAGTACACCTCGAGCATGGTCACGACG
GTTAAATCCCTTCTCCACGACGTTTTCCTCCCCTCGATTTTGGTTTTCCC
TGATTGGGATGCGGTTGAAGACAACAGTCGCCCTCTCCGTTTGTGCTCAG
ATGCCTGTATAGACGGGTTTGGCGCTACTCTAGAGCAAGAACAGCAGTTG
GATGGCACTGTGCGGCCTATTGTGTACATTAGCCGCGCTACTGTCCCTGC
CGAACGCAATTGGACCGTTTTGGATTTGGAGGCTAGTAGCATTGTCTGGG
CTACTAAACGGCTTCGCGGATACCTTTGGTCGACCAAGATTGTCATTCAT
TCCGATCACAAGGCTTTGAAAAGCATTGGCAAGGTTGACGAACACAATGC
TCGTGTGCAACGTTGGTTGGAGTTTTTGTCCAACTTCACATACACTTTGG
AGTACAGGAAAGGTTCGGCGAATGGCAATGCGGATTTCATTTCGCGACTG
CCGTTGCCAGCGAGAGAGGAGGACAAGACCGGTCCTGACAGCATCGACGA
CGACCAAGACAGCTGGGACTACTACCCGCTGGTCTGGGACTCCCGCGACG
CCTACATCGGCGCCTTCGTCATGCTTCGGTACCGCCGGTGA
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