EsuBft899_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft899_2a-0001
Unique NameEsuBft899_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_324contigScaffold_324:23050..24904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft899_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length85
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft899_2aEsuBft899_2aEctocarpus subulatus male Bft15bgeneScaffold_324 23050..24904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft899_2a-0001EsuBft899_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_324 24088..24904 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft899_2a-0001-exonEsuBft899_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_324 23050..23389 -
EsuBft899_2a-0001-exonagat-exon-38223Ectocarpus subulatus male Bft15bexonScaffold_324 23479..23508 -
EsuBft899_2a-0001-exonagat-exon-38224Ectocarpus subulatus male Bft15bexonScaffold_324 23992..24147 -
EsuBft899_2a-0001-exonagat-exon-38225Ectocarpus subulatus male Bft15bexonScaffold_324 24578..24904 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft899_2a-0001-exonagat-three_prime_utr-22865Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_324 23050..23389 -
EsuBft899_2a-0001-exonagat-three_prime_utr-22866Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_324 23479..23508 -
EsuBft899_2a-0001-exonagat-three_prime_utr-22867Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_324 23992..24087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft899_2a-0001-cdsEsuBft899_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_324 24088..24147 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft899_2a-0001 ID=EsuBft899_2a-0001|Name=EsuBft899_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=853bp|location=Sequence derived from alignment at Scaffold_324:23050..24904- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCATCTTGTTGGAGTCGTTGTGCTCGTCATGGACTCGACTCCGA
CGCCTCCGAGACGCCACACAGGCGCAGCACGCCTAGGCACCACAACCCAG
ATGAGGGGTACGGCAGCCCCCCAGATGGGTCTAGGTTGGCAGGAGAATTC
GCACTCGCACGTCGAAGTGGGACCGCCACCATCCCTTTCTCCGTAGCAGA
CTCCAGCCCGTCTCCTGGCGACGCAGCTGGAGGCGGTGGTGGTACGCCCG
AGCCGGAGGGTGGATCAGCAGCCAACAGAGTGGGCAGCGTGCCGGGGGCA
AGGCGAAGCAGAAGCCTAACGACGAAGGTTCCACTCGTCTATGTTGGACG
CCTGCGGAGAAGGTCGTACTCTGGAAGGCGATCGTGAAACACAACCCTTT
CGCAGAGAGTGGGCAGAAGCTGGCGAGAAAACATTGATTGGCGTAGGGTA
GCCGCTTCCGTGATCGAGGACCAGGACATTGAGCTGTACACGAACGAAGG
AGGCAGGGAGACCCCTCGTGTGTTGCACTCGCGTTCTCCTTGTGGGTCGT
ACGGTAAGGGCTACCATCGCTTTGAACCTTCTGGTAGTGTGAGGCAGTGG
TCCCACGAGAACATTTCCCACATGACGTGCTCGCGTTTGGCGTAGAAGGT
GTTTCGTCTATGCCGGAACAAGGTGCCACACTTTCATTGTACATTCACGT
CTGCTGTGAGTTTCTGGAGACAGAGTGGAGAGATTCCAGGCTCCCGCCAC
GTTTCGAACTGCTAATTCTGGCGCAAGATGAAATACTGCTACACTATGCA
TGAGGGAGTTACGCCTATTACCATTGTATGCATAGCACTGACATGCCCGC
CAG
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protein sequence of EsuBft899_2a-0001

>EsuBft899_2 ID=EsuBft899_2|Name=EsuBft899_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=128bp
MPPSCWSRCARHGLDSDASETPHRRSTPRHHNPDEGYGSPPDGSRLAGEF
ALARRSGTATIPFSVADSSPSPGDAAGGGGGTPEPEGGSAANRVGSVPGA
RRSRSLTTKVPLVYVGRLRRRSYSGRRS
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mRNA from alignment at Scaffold_324:23050..24904-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft899_2a-0001 ID=EsuBft899_2a-0001|Name=EsuBft899_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1855bp|location=Sequence derived from alignment at Scaffold_324:23050..24904- (Ectocarpus subulatus male Bft15b)
ATGCCACCATCTTGTTGGAGTCGTTGTGCTCGTCATGGACTCGACTCCGA
CGCCTCCGAGACGCCACACAGGCGCAGCACGCCTAGGCACCACAACCCAG
ATGAGGGGTACGGCAGCCCCCCAGATGGGTCTAGGTTGGCAGGAGAATTC
GCACTCGCACGTCGAAGTGGGACCGCCACCATCCCTTTCTCCGTAGCAGA
CTCCAGCCCGTCTCCTGGCGACGCAGCTGGAGGCGGTGGTGGTACGCCCG
AGCCGGAGGGTGGATCAGCAGCCAACAGAGTGGGCAGCGTGCCGGGGGCA
AGGCGAAGCAGAAGCCTAACGACGAAGGTTAGTATCGATTGAGTCTCGCG
TAGGTACGCTCAAGCCGCCAACACAGCAGCAGTAGTGCAATTCCATGTGA
CGCATCTAGGTGCAACACGCCGTGCGTCAGGTGCGGGGGGTGTGCGTACA
GAAGCACTTTTTGCCCTCCGCTTGGCCGCCGAGTGCAGGCACTGACAGCA
GTTCTGTACAGATGTATCAGCGCGTATGTAGAGGTGAAGGAGCGTGGTGG
GTGAGTTGGTGGGGGGGTGACGGGTGTTGCTTCATCTCGCGTTTCAACTT
GGGCCATGTGTGTCTGGGTTTATAAATTTCAAAACAGGCTGTAATGATCA
CACAGCAGGTTGAACTGAAGTACTGCTCCACTCTCGCTGTAAAAGTGCAG
ACAAGCGCCTGTCCTGACGCTCATCGATACGTACGCCCTCCTCCTGTACC
TCGCCAGGTTCCACTCGTCTATGTTGGACGCCTGCGGAGAAGGTCGTACT
CTGGAAGGCGATCGTGAAACACAACCCTTTCGCAGAGAGTGGGCAGAAGC
TGGCGAGAAAACATTGATTGGCGTAGGGTAGCCGCTTCCGTGATCGAGGA
CCAGGACATTGAGGTTTGTTGTTGTTGTTGTCTCACATTAGCTCTATAGT
CCACAAAAAATGGGGAGCCCGTGGTATCAAAACCCGGCACATACGACGCC
GCGGGGAAACAAAACAAAAAGAGGGTACAAACCACTCGGAAAAAGGAAAC
AAAATGATAGAAAGAAAAGAACAGGTATCGCACCGACCGTTCGAGACAAG
AGCCCTCGGAAACCGATCAAAATAAAACAAAATCAAAAATAAAGGAGGAC
GCTTCCCACACCCGTCCAAAGAAAAAAATCAAAGGGTAACGTACCAGCAC
CAGGCACTACGCACCAGGGCAATGGAGTAACGGAGCAAACAGGACAGAAA
GGCGGCAGATGGCCAGACAGCCAGACGTACAAGAACAAAGGCAACATCAA
AAGCGAGATCAAGGTACCCAACACAGCAGCGTAGGCAGGGAGGGAGGTCA
TGAAAAAAAGAAACACAGCACAGAGGCCGAAGGCAATACATTCGAGCTGT
ACACGAACGAAGGAGGCAGGGAGACCGTCCATGTGGCCATGCAGGAAAAG
ACCAAGGTGTGGGAGGATCGCGTGGGCATTATATGCATAGATGCTTCAGA
ATTTCGATCACGAAGCCTCGTGTGTTGCACTCGCGTTCTCCTTGTGGGTC
GTACGGTAAGGGCTACCATCGCTTTGAACCTTCTGGTAGTGTGAGGCAGT
GGTCCCACGAGAACATTTCCCACATGACGTGCTCGCGTTTGGCGTAGAAG
GTGTTTCGTCTATGCCGGAACAAGGTGCCACACTTTCATTGTACATTCAC
GTCTGCTGTGAGTTTCTGGAGACAGAGTGGAGAGATTCCAGGCTCCCGCC
ACGTTTCGAACTGCTAATTCTGGCGCAAGATGAAATACTGCTACACTATG
CATGAGGGAGTTACGCCTATTACCATTGTATGCATAGCACTGACATGCCC
GCCAG
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Coding sequence (CDS) from alignment at Scaffold_324:23050..24904-

>EsuBft899_2a-0001 ID=EsuBft899_2a-0001|Name=EsuBft899_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=387bp|location=Sequence derived from alignment at Scaffold_324:23050..24904- (Ectocarpus subulatus male Bft15b)
ATGCCACCATCTTGTTGGAGTCGTTGTGCTCGTCATGGACTCGACTCCGA
CGCCTCCGAGACGCCACACAGGCGCAGCACGCCTAGGCACCACAACCCAG
ATGAGGGGTACGGCAGCCCCCCAGATGGGTCTAGGTTGGCAGGAGAATTC
GCACTCGCACGTCGAAGTGGGACCGCCACCATCCCTTTCTCCGTAGCAGA
CTCCAGCCCGTCTCCTGGCGACGCAGCTGGAGGCGGTGGTGGTACGCCCG
AGCCGGAGGGTGGATCAGCAGCCAACAGAGTGGGCAGCGTGCCGGGGGCA
AGGCGAAGCAGAAGCCTAACGACGAAGGTTCCACTCGTCTATGTTGGACG
CCTGCGGAGAAGGTCGTACTCTGGAAGGCGATCGTGA
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