EsuBft899_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft899_14a-0001
Unique Name	EsuBft899_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_324	contig	Scaffold_324:160631..162115 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7070.TC002223-PA
ProteomeId	EsuBft899_14
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR013103
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1434
Hectar predicted targeting category	signal peptide
Evalue	3.4e-63
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BI7U@33208\|Metazoa,3CTS1@33213\|Bilateria,41WYJ@6656\|Arthropoda,3SH01@50557\|Insecta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Encoded by
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0090304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft899_14a	EsuBft899_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_324 160631..162115 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_14a-0001-exon	agat-exon-38283	Ectocarpus subulatus male Bft15b	exon	Scaffold_324 160631..160840 -
EsuBft899_14a-0001-exon	EsuBft899_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_324 160892..162115 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_14a-0001-exon	agat-three_prime_utr-22863	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_324 160631..160840 -
EsuBft899_14a-0001-exon	agat-three_prime_utr-22864	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_324 160892..160984 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_14a-0001-cds	EsuBft899_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_324 160985..162115 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft899_14a-0001	EsuBft899_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_324 160985..162115 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_324:160631..162115-
coding sequence from alignment at Scaffold_324:160631..162115-

spliced messenger RNA

>EsuBft899_14a-0001 ID=EsuBft899_14a-0001|Name=EsuBft899_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1434bp|location=Sequence derived from alignment at Scaffold_324:160631..162115- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTCTGGCCTGATCGTGAAGCTGTGCAAGAGTCTGTATGGCTTGAA
GCAGGCATCACGACATTGGCATGCGCACCTGACGAGGTGTTTGTTACTTT
TAGGTTTTTTGCAGTGTCTGGCAGATGCGTGTGTTTTTCGCTTGATGGAG
GAGGGACGTGTGATCATGATCATCGTGGTCCACGTGGATGACATTTTTGC
TGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAACGAGA
TGGTCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGTGCTTT
TACGAGAGAGACGTAGAGAGAGGGCTGTTGAGGATTTCGCAGCAGAGGTT
TGCCGAAGAGTTGGCTGCAGAGTACGGAATTGAGTGGGGGAGGAGTGTGC
CCTTGCCTGTGAGCGTGAAGCTCACCGACTTTGACGAGAACGAAGCGAGT
GCTGATGTCCCTTTTCGCGAGTTGGTAGGATCTCTGATGTGGTTGGCCAC
TCAAACAAGGCCGGACATCGCGAACGCAGTACGAGCAGTAGCGCGGTATT
GTGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGGG
TACGTACGGAGGACGAGTTGGATGGGGATTACATTTGAGAGGGGAGTGGT
GACTGGGATGAGCATGCAGGTGTTTGTGGATGCCGACTATGCAAGCAAGG
CGACAGACCGTAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGGGAGGG
TGTGTGACTTGGTTTTCGAGGACACAAAAGTGTGTCACGCTTTCCACCAC
GGAAGCAGAGTATGTGGCAATTGCCGATGTCTTGAAGGAAGTGTTGTTCT
TGAGGCAGGTGTGGCGTTTTATGTTGCCAGATGCGAGTATGCCGTGCATC
CCGGTGTTCGAGGATAATCAGGGAGCGATTCAGATTATGCACAACCCGAT
CACGAACTCCAACTCGAAGCACATCGATGTACGGCATCACTTTATCAGGG
AGCTGGTAGAGAGGAAAGAGATTTCAATTACTCATGTGCCGACGCAATTT
CAGCATGCAGATTTCTTGACGAAGGCTATTAGCAAGGAGTCTTTTGCGTT
GCACCGTGACTTTGTGATGAACTTGCAGTGAAGGAAGTGTTTTGGGGTCA
ATTCGTATTCTGTAGCGGAGAGAGGAAGGGAGAGACGAGATCGGACAAGA
GAAAGAGAGAGTCTGATGACGGTGGAGTTTTAGTTATGTTGGAATTTTTC
TTGTTTGTTTTGGAGGAGTTTTGGTTGTGTTGGAATTTTTCTTGTGATTG
ACTTGGGAGGGTTCTTGCATGTCGTGGGGAGGATATTGGATTTGGATGCT
TTGAGAATTTTCTTGTTTGTTTTGGGAGAGAGAGATGGTAAAAGAGGAAT
TTGGTTTTTGCCTTAGCATGACGATGCATACGAG

protein sequence of EsuBft899_14a-0001

>EsuBft899_14 ID=EsuBft899_14|Name=EsuBft899_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=376bp
MLSGLIVKLCKSLYGLKQASRHWHAHLTRCLLLLGFLQCLADACVFRLME
EGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACF
YERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEAS
ADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILG
YVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGG
CVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCI
PVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQF
QHADFLTKAISKESFALHRDFVMNLQ

mRNA from alignment at Scaffold_324:160631..162115-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft899_14a-0001 ID=EsuBft899_14a-0001|Name=EsuBft899_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1485bp|location=Sequence derived from alignment at Scaffold_324:160631..162115- (Ectocarpus subulatus male Bft15b)
ATGTTGTCTGGCCTGATCGTGAAGCTGTGCAAGAGTCTGTATGGCTTGAA
GCAGGCATCACGACATTGGCATGCGCACCTGACGAGGTGTTTGTTACTTT
TAGGTTTTTTGCAGTGTCTGGCAGATGCGTGTGTTTTTCGCTTGATGGAG
GAGGGACGTGTGATCATGATCATCGTGGTCCACGTGGATGACATTTTTGC
TGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAACGAGA
TGGTCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGTGCTTT
TACGAGAGAGACGTAGAGAGAGGGCTGTTGAGGATTTCGCAGCAGAGGTT
TGCCGAAGAGTTGGCTGCAGAGTACGGAATTGAGTGGGGGAGGAGTGTGC
CCTTGCCTGTGAGCGTGAAGCTCACCGACTTTGACGAGAACGAAGCGAGT
GCTGATGTCCCTTTTCGCGAGTTGGTAGGATCTCTGATGTGGTTGGCCAC
TCAAACAAGGCCGGACATCGCGAACGCAGTACGAGCAGTAGCGCGGTATT
GTGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGGG
TACGTACGGAGGACGAGTTGGATGGGGATTACATTTGAGAGGGGAGTGGT
GACTGGGATGAGCATGCAGGTGTTTGTGGATGCCGACTATGCAAGCAAGG
CGACAGACCGTAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGGGAGGG
TGTGTGACTTGGTTTTCGAGGACACAAAAGTGTGTCACGCTTTCCACCAC
GGAAGCAGAGTATGTGGCAATTGCCGATGTCTTGAAGGAAGTGTTGTTCT
TGAGGCAGGTGTGGCGTTTTATGTTGCCAGATGCGAGTATGCCGTGCATC
CCGGTGTTCGAGGATAATCAGGGAGCGATTCAGATTATGCACAACCCGAT
CACGAACTCCAACTCGAAGCACATCGATGTACGGCATCACTTTATCAGGG
AGCTGGTAGAGAGGAAAGAGATTTCAATTACTCATGTGCCGACGCAATTT
CAGCATGCAGATTTCTTGACGAAGGCTATTAGCAAGGAGTCTTTTGCGTT
GCACCGTGACTTTGTGATGAACTTGCAGTGAAGGAAGTGTTTTGGGGTCA
ATTCGTATTCTGTAGCGGAGAGAGGAAGGGAGAGACGAGATCGGACAAGA
GAAAGAGAGAGTCTGATGACGGTGGTAGGCGTGTTGAAGTTAGTTGTGTT
AAGATTTTTCTTGTTTGGTTTGGAGGAGTTTTAGTTATGTTGGAATTTTT
CTTGTTTGTTTTGGAGGAGTTTTGGTTGTGTTGGAATTTTTCTTGTGATT
GACTTGGGAGGGTTCTTGCATGTCGTGGGGAGGATATTGGATTTGGATGC
TTTGAGAATTTTCTTGTTTGTTTTGGGAGAGAGAGATGGTAAAAGAGGAA
TTTGGTTTTTGCCTTAGCATGACGATGCATACGAG

Coding sequence (CDS) from alignment at Scaffold_324:160631..162115-

>EsuBft899_14a-0001 ID=EsuBft899_14a-0001|Name=EsuBft899_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1131bp|location=Sequence derived from alignment at Scaffold_324:160631..162115- (Ectocarpus subulatus male Bft15b)
ATGTTGTCTGGCCTGATCGTGAAGCTGTGCAAGAGTCTGTATGGCTTGAA
GCAGGCATCACGACATTGGCATGCGCACCTGACGAGGTGTTTGTTACTTT
TAGGTTTTTTGCAGTGTCTGGCAGATGCGTGTGTTTTTCGCTTGATGGAG
GAGGGACGTGTGATCATGATCATCGTGGTCCACGTGGATGACATTTTTGC
TGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAACGAGA
TGGTCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGTGCTTT
TACGAGAGAGACGTAGAGAGAGGGCTGTTGAGGATTTCGCAGCAGAGGTT
TGCCGAAGAGTTGGCTGCAGAGTACGGAATTGAGTGGGGGAGGAGTGTGC
CCTTGCCTGTGAGCGTGAAGCTCACCGACTTTGACGAGAACGAAGCGAGT
GCTGATGTCCCTTTTCGCGAGTTGGTAGGATCTCTGATGTGGTTGGCCAC
TCAAACAAGGCCGGACATCGCGAACGCAGTACGAGCAGTAGCGCGGTATT
GTGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGGG
TACGTACGGAGGACGAGTTGGATGGGGATTACATTTGAGAGGGGAGTGGT
GACTGGGATGAGCATGCAGGTGTTTGTGGATGCCGACTATGCAAGCAAGG
CGACAGACCGTAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGGGAGGG
TGTGTGACTTGGTTTTCGAGGACACAAAAGTGTGTCACGCTTTCCACCAC
GGAAGCAGAGTATGTGGCAATTGCCGATGTCTTGAAGGAAGTGTTGTTCT
TGAGGCAGGTGTGGCGTTTTATGTTGCCAGATGCGAGTATGCCGTGCATC
CCGGTGTTCGAGGATAATCAGGGAGCGATTCAGATTATGCACAACCCGAT
CACGAACTCCAACTCGAAGCACATCGATGTACGGCATCACTTTATCAGGG
AGCTGGTAGAGAGGAAAGAGATTTCAATTACTCATGTGCCGACGCAATTT
CAGCATGCAGATTTCTTGACGAAGGCTATTAGCAAGGAGTCTTTTGCGTT
GCACCGTGACTTTGTGATGAACTTGCAGTGA