EsuBft898_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft898_7a-0001
Unique NameEsuBft898_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_316contigScaffold_316:322429..324284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6669.EFX68856
ProteomeIdEsuBft898_7
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPS51257
Protein domainsPTHR19303
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Notecenp-b homolog protein 2 os:schizosaccharomyces pombe (strain 972 atcc 24843) gn:cbh2 pe:3 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length1856
Evalue5.79e-11
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38HJW@33154|Opisthokonta,3BCG5@33208|Metazoa,3CXR0@33213|Bilateria,420II@6656|Arthropoda
Date last modified2016-06-13
Date creation2016-06-13
DescriptionJerky protein homolog-like
COG categoryBD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft898_7aEsuBft898_7aEctocarpus subulatus male Bft15bgeneScaffold_316 322429..324284 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_7a-0001-exonEsuBft898_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_316 322429..324284 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_7a-0001-exonagat-three_prime_utr-22854Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_316 322429..323909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_7a-0001-cdsEsuBft898_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_316 323910..324284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_7a-0001EsuBft898_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_316 323910..324284 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft898_7a-0001 ID=EsuBft898_7a-0001|Name=EsuBft898_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1856bp|location=Sequence derived from alignment at Scaffold_316:322429..324284- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCCCTGCAAGGGAGGATGTGGCGGGCGGCTCCACGGCAATTGC
GGCAGCGTGTTTGAGGACAACGAGCAGCACCGCATCTGCAGCACGTGTGT
CGCCAGGACTAGCAACTTCTGCCGCAGTGAGGGAGTGGGTGGAAGACTTC
AAGGCAGGCGATCGGTGGGCGAAGAACTTCGTGAAGCGCAACAAGATCCT
GAGCGTGAGACTTCACGGCGAGGGTGGTAGCGTCGACAAGGAGGCCATCA
GGGAGGACATGGAGGAAATCAGGGCCCTTTGCGAGCAGTACCCGGCTAGG
TTCATCTTCAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAG
GGGCACGTACATTTCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCACTTCGGCGCCCTGGAAGTGGCAGC
AGAGGACAGTGGCAACGGAGACGCGGCGTTCTACCTAACGAAAGCGAAGA
TGTCGATGATCGCAGCGCATTCCGCTAGGCGGGTGCGCCAGGCAGACATT
AGAGGATTTGTCGCGACGTAGAGTTCATGGTTGTTTCTTTTTCTTGCGGT
TCGCTTCCTGTCGTGTACTTTTTTTTTTTTTTTCTTGCAACATCGAAACG
GGTACGCCAGGCAGACACTCCAGTGTCGCGACGTAGTTTGGGGGGGAGAT
ACAACTGTAGTGCAGTAGTAATGATTTTTGTTTTCTTGCAGTGCGCTTCC
TGTCGTGTTTCTTTTTCTGTTTTGTCTTTTGTATCTTGCAACATCGAAGG
AGGGGCTCTAGGGCTGAGATATAGCTACGTCCACTCTGTACGAACGGGAG
CTTTAC
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protein sequence of EsuBft898_7a-0001

>EsuBft898_7 ID=EsuBft898_7|Name=EsuBft898_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=125bp
MATPAREDVAGGSTAIAAACLRTTSSTASAARVSPGLATSAAVREWVEDF
KAGDRWAKNFVKRNKILSVRLHGEGGSVDKEAIREDMEEIRALCEQYPAR
FIFNVDETGLQWKLMPRGTYISTSX
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mRNA from alignment at Scaffold_316:322429..324284-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft898_7a-0001 ID=EsuBft898_7a-0001|Name=EsuBft898_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1856bp|location=Sequence derived from alignment at Scaffold_316:322429..324284- (Ectocarpus subulatus male Bft15b)
ATGGCCACCCCTGCAAGGGAGGATGTGGCGGGCGGCTCCACGGCAATTGC
GGCAGCGTGTTTGAGGACAACGAGCAGCACCGCATCTGCAGCACGTGTGT
CGCCAGGACTAGCAACTTCTGCCGCAGTGAGGGAGTGGGTGGAAGACTTC
AAGGCAGGCGATCGGTGGGCGAAGAACTTCGTGAAGCGCAACAAGATCCT
GAGCGTGAGACTTCACGGCGAGGGTGGTAGCGTCGACAAGGAGGCCATCA
GGGAGGACATGGAGGAAATCAGGGCCCTTTGCGAGCAGTACCCGGCTAGG
TTCATCTTCAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAG
GGGCACGTACATTTCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCACTTCGGCGCCCTGGAAGTGGCAGC
AGAGGACAGTGGCAACGGAGACGCGGCGTTCTACCTAACGAAAGCGAAGA
TGTCGATGATCGCAGCGCATTCCGCTAGGCGGGTGCGCCAGGCAGACATT
AGAGGATTTGTCGCGACGTAGAGTTCATGGTTGTTTCTTTTTCTTGCGGT
TCGCTTCCTGTCGTGTACTTTTTTTTTTTTTTTCTTGCAACATCGAAACG
GGTACGCCAGGCAGACACTCCAGTGTCGCGACGTAGTTTGGGGGGGAGAT
ACAACTGTAGTGCAGTAGTAATGATTTTTGTTTTCTTGCAGTGCGCTTCC
TGTCGTGTTTCTTTTTCTGTTTTGTCTTTTGTATCTTGCAACATCGAAGG
AGGGGCTCTAGGGCTGAGATATAGCTACGTCCACTCTGTACGAACGGGAG
CTTTAC
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Coding sequence (CDS) from alignment at Scaffold_316:322429..324284-

>EsuBft898_7a-0001 ID=EsuBft898_7a-0001|Name=EsuBft898_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=375bp|location=Sequence derived from alignment at Scaffold_316:322429..324284- (Ectocarpus subulatus male Bft15b)
ATGGCCACCCCTGCAAGGGAGGATGTGGCGGGCGGCTCCACGGCAATTGC
GGCAGCGTGTTTGAGGACAACGAGCAGCACCGCATCTGCAGCACGTGTGT
CGCCAGGACTAGCAACTTCTGCCGCAGTGAGGGAGTGGGTGGAAGACTTC
AAGGCAGGCGATCGGTGGGCGAAGAACTTCGTGAAGCGCAACAAGATCCT
GAGCGTGAGACTTCACGGCGAGGGTGGTAGCGTCGACAAGGAGGCCATCA
GGGAGGACATGGAGGAAATCAGGGCCCTTTGCGAGCAGTACCCGGCTAGG
TTCATCTTCAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAG
GGGCACGTACATTTCCACCTCNNNN
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