EsuBft898_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft898_6a-0001
Unique NameEsuBft898_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_316contigScaffold_316:318625..320507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft898_6
Protein domainsIPR000782
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length58
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002120.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft898_6aEsuBft898_6aEctocarpus subulatus male Bft15bgeneScaffold_316 318625..320507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_6a-0001EsuBft898_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_316 318683..320457 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_6a-0001-exonagat-exon-70530Ectocarpus subulatus male Bft15bexonScaffold_316 318625..318802 -
EsuBft898_6a-0001-exonEsuBft898_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_316 319302..319393 -
EsuBft898_6a-0001-exonagat-exon-70529Ectocarpus subulatus male Bft15bexonScaffold_316 319663..319725 -
EsuBft898_6a-0001-exonagat-exon-70531Ectocarpus subulatus male Bft15bexonScaffold_316 320259..320507 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_6a-0001-exonagat-three_prime_utr-22853Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_316 318625..318682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_6a-0001-cdsEsuBft898_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_316 318683..318802 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_6a-0001-exonagat-five_prime_utr-14818Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_316 320458..320507 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft898_6a-0001 ID=EsuBft898_6a-0001|Name=EsuBft898_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=582bp|location=Sequence derived from alignment at Scaffold_316:318625..320507- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGGGAGCAGCTCGCTCGTTAGCACCTGATGTTCGACTTGGCTTGGCTGA
ATGCCAAGTCCGCAGCACCGCCTGACAGACGGGTCCCCCGAGTATGAGCA
TGGGATACGGACATCGCCACCGCTTTTGGCAGAGGTGCTGGAAAATGCGG
GTTGCCGCCTGTTCCTCGAAGCCATGCGCAAAGCGGAAAAAATTGAGGGG
GCAAATAGCATAACCATTATCGCACCGAACGACGGCGCCTTCCCTTCAGC
GGACGCGTTCGATGATTCTTCGTGGGGATTACACATCATGGACGGCGCCT
ATAAAATAGGAGAACTCGTAAATTTCAACGGGGGTAGGGTGCAGCCTCAG
AGCCTGGAGCCAAAGCACGCTCTAATCTTCCGCGTCGAGATCGGGGGCCA
TATGGTGGCCTATGTCTCCGGCGAAACCAAGCCAGCACGCCGAACGCGCA
TGGTCAAGACGGATCTCATCGCCCGCAACGGAGTGTTTGTACACGTCGTG
GACAAAATCTTGTATGCGGAATAGTTTCTCCAGAACGGAGTTGGTTCTAT
GCACGTTGTTTAATCGTGAGGAAATAGTCCTT
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protein sequence of EsuBft898_6a-0001

>EsuBft898_6 ID=EsuBft898_6|Name=EsuBft898_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=157bp
MPSPQHRLTDGSPEYEHGIRTSPPLLAEVLENAGCRLFLEAMRKAEKIEG
ANSITIIAPNDGAFPSADAFDDSSWGLHIMDGAYKIGELVNFNGGRVQPQ
SLEPKHALIFRVEIGGHMVAYVSGETKPARRTRMVKTDLIARNGVFVHVV
DKILYAE
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mRNA from alignment at Scaffold_316:318625..320507-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft898_6a-0001 ID=EsuBft898_6a-0001|Name=EsuBft898_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1883bp|location=Sequence derived from alignment at Scaffold_316:318625..320507- (Ectocarpus subulatus male Bft15b)
GCGGGAGCAGCTCGCTCGTTAGCACCTGATGTTCGACTTGGCTTGGCTGA
ATGCCAAGTCCGCAGCACCGCCTGACAGACGGGTCCCCCGAGTATGAGCA
TGGGATACGGACATCGCCACCGCTTTTGGCAGAGGTGCTGGAAAATGCGG
GTTGCCGCCTGTTCCTCGAAGCCATGCGCAAAGCGGAAAAAATTGAGGGG
GCAAATAGCATAACCATTATCGCACCGAACGACGGCGCCTTCCCTTCAGG
TGTGACCTCTGCTTAATGTTATTACATGCAAAACCCTAAATAGGACGATG
CATACGTGCAAATACACCACAAGGCGCGGGCAAGCGCAGTAAGAGAAAGG
TAAATTAATCAAACCTCGGATGATCTCGGGACAACAGATTGACGAGTAGA
CCATAGTAATGTTCGCACGGCTACAACCAAGAGGCGCGCGGTGCCGAGCG
AAAGCGAGATTGTACGGTTGAGCCGTGCCACCTTCACTCTGCGTATATAC
TGGGCATCCGAGATGTGGACTGATGCAAGTCTAAACACAGCAGTCTAACG
AACCGCCATTTTGGCACGACTACGCCGTGATTTGCGCACGTCCGTTCCTC
CTTGTGGTATTATGGATGCAGCGTTTCTCCCGCGCTATCTATCTCGATGT
AGCGTACTGTCACGCTGTGATACACCACATATCTGTGCATGCATACCCAA
CCTCTCGCTGTCTCCCGTTGGAACCGGCCTCGTTTCTGTGGCGTCCCATG
ATGTTGTTCTTGGGCGTCTTGTATGCATTAAGCGGACGCGTTCGATGATT
CTTCGTGGGGATTACACATCATGGACGGCGCCTATAAAATAGGAGGTGGG
TGTCAATGAGCAGCAAAAACACGGTTAGACAAGTAATGTTGTTCAGGGAC
AAAACACAATGGAAGAGTGGTTGTGGTCGGCATCCCTGGAACGTGATGCT
CTCACTCCACACAGCGATCCCAAGTCTGTTCCAACCAGCATCACCTCAAA
TCTGTGCGGGGTTTCCGATCTATCGATCCTGTGCATTTTCAACGCGAAAG
CTAAACAACCCTACCCGATGCCGAAACTTTGTGTTTGTCGGCGCCGATGC
TCTTGAAAGAACAGAACTCGTAAATTTCAACGGGGGTAGGGTGCAGCCTC
AGAGCCTGGAGCCAAAGCACGCTCTAATCTTCCGCGTCGAGATCGGGGGC
CATATGGTGTGTGAGGAAACTACGACACGCGCAATAGGCAGAGACGAGGC
AATCCATGATTCGCAATATGTAGTTTAGACTGGCAATGACTCATGTAGGC
TATACGTGAAGTACGAGGCAATATGTGGTTGGTAGACGCTGCGCACAGAT
GGCAAGAGCACAGATAATCGCACGTATCAACCGAAGCGTCGGAAGTGCTT
CAATACGTGCGTAGGTCATGGCTGAAACACGTAAATCTAAACGAAAGCGG
GCAACGAAACAAGTTTTCCATAGTTTCGATCGCACCAGCAGTGATTTCGC
GTGGAGCTCTAATGAACGCTACTCCGCGAAGTGCGGCTTTTGTCATGTCA
GAATACCTCAGCTGCCATGCAGGTATAGCATCGTTGCTTGCGTTTCTCGC
TCAGCGCTTCCTTGGAATTCCAGAGAGAGAGCAGCTCATAGGAGATATCA
TAGTGTACTTCACCCTAGCATACCTGCTCTCTTTTCATGCTGGTTTCATT
GAAAGGTGGCCTATGTCTCCGGCGAAACCAAGCCAGCACGCCGAACGCGC
ATGGTCAAGACGGATCTCATCGCCCGCAACGGAGTGTTTGTACACGTCGT
GGACAAAATCTTGTATGCGGAATAGTTTCTCCAGAACGGAGTTGGTTCTA
TGCACGTTGTTTAATCGTGAGGAAATAGTCCTT
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Coding sequence (CDS) from alignment at Scaffold_316:318625..320507-

>EsuBft898_6a-0001 ID=EsuBft898_6a-0001|Name=EsuBft898_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=474bp|location=Sequence derived from alignment at Scaffold_316:318625..320507- (Ectocarpus subulatus male Bft15b)
ATGCCAAGTCCGCAGCACCGCCTGACAGACGGGTCCCCCGAGTATGAGCA
TGGGATACGGACATCGCCACCGCTTTTGGCAGAGGTGCTGGAAAATGCGG
GTTGCCGCCTGTTCCTCGAAGCCATGCGCAAAGCGGAAAAAATTGAGGGG
GCAAATAGCATAACCATTATCGCACCGAACGACGGCGCCTTCCCTTCAGC
GGACGCGTTCGATGATTCTTCGTGGGGATTACACATCATGGACGGCGCCT
ATAAAATAGGAGAACTCGTAAATTTCAACGGGGGTAGGGTGCAGCCTCAG
AGCCTGGAGCCAAAGCACGCTCTAATCTTCCGCGTCGAGATCGGGGGCCA
TATGGTGGCCTATGTCTCCGGCGAAACCAAGCCAGCACGCCGAACGCGCA
TGGTCAAGACGGATCTCATCGCCCGCAACGGAGTGTTTGTACACGTCGTG
GACAAAATCTTGTATGCGGAATAG
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