EsuBft898_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft898_3a-0001
Unique NameEsuBft898_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_316contigScaffold_316:295663..296442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog5037.XP_001538709.1
ProteomeIdEsuBft898_3
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl4751|Fungi
Length780
Hectar predicted targeting categoryother localisation
Evalue2.6e-43
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,20FR9@147545|Eurotiomycetes,3B52A@33183|Onygenales
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K14835
EC2.1.1.310
Descriptionto reverse transcriptase
COG categoryL
BRITEko00000,ko01000,ko03009
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0097159
GO1901363
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft898_3aEsuBft898_3aEctocarpus subulatus male Bft15bgeneScaffold_316 295663..296442 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_3a-0001-exonEsuBft898_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_316 295663..296442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_3a-0001-cdsEsuBft898_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_316 295663..296442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft898_3a-0001EsuBft898_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_316 295663..296442 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft898_3a-0001 ID=EsuBft898_3a-0001|Name=EsuBft898_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=780bp|location=Sequence derived from alignment at Scaffold_316:295663..296442+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTATGTAGACGACATTCTGCTCACTGGGACCAACGAGGAACTAGT
GTCGACCATTATCGAACAGATGAAGGAACGGTTTGAAACGGTGGATCTAG
GAGATGCGAAGTTCATCGTGGGAATGGCCATCCACCGCAACCGCGACGCG
GGCACTATTCTCTTGACGCAGGAGGCATACACCAAGGCCGTACTTGCCAA
GTTTGGCATGGCCGACTTGCACCCGACGAAGACGCCGGCGGAGGTTGGAC
CGATGAGCACAGTGGTGGAGGAAGAGACTCTGACGCCGGATGAAACTACA
ATGTTCCGGTCTGCCACAGGTTCGGCTCTATACATATGTAGGAAATCGAG
GCCGGACCTTTCCCACACGATACTGGTGCTTACCAAGAGCATGGCTAAGC
CCGGGACTAAGGCGTGGGCTAAGCTGAAGCGACTGATGCGGTACCTGAAG
GGAACCGCATCGCTGGGGATAACATACAGCGAGGACGCATCGAACGGAGG
CAAACTAACCACTTACGTTGATTCCGACTTTGCAGGCGACATAGACGACA
GGAAATCGACTACTGGGGTTATTATTGAACTCGCAGGTGGCGTGGTAGAC
TCGACGGCTACGAAGCAAACGGTGACGGCTGTCTCGTCGGCTGAGGCGGA
GTATGTTGCAATGTCCAAGGCCTGCAAGATAATCCTCTACTGGCGCCACC
TACTCAAGACTATCAACCGGGAGCAGAAGGAATCAACGATATTGTACGAA
GATAGTACTGGTGCCATGTCAACTAGATAG
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protein sequence of EsuBft898_3a-0001

>EsuBft898_3 ID=EsuBft898_3|Name=EsuBft898_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=259bp
MVYVDDILLTGTNEELVSTIIEQMKERFETVDLGDAKFIVGMAIHRNRDA
GTILLTQEAYTKAVLAKFGMADLHPTKTPAEVGPMSTVVEEETLTPDETT
MFRSATGSALYICRKSRPDLSHTILVLTKSMAKPGTKAWAKLKRLMRYLK
GTASLGITYSEDASNGGKLTTYVDSDFAGDIDDRKSTTGVIIELAGGVVD
STATKQTVTAVSSAEAEYVAMSKACKIILYWRHLLKTINREQKESTILYE
DSTGAMSTR
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mRNA from alignment at Scaffold_316:295663..296442+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft898_3a-0001 ID=EsuBft898_3a-0001|Name=EsuBft898_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=780bp|location=Sequence derived from alignment at Scaffold_316:295663..296442+ (Ectocarpus subulatus male Bft15b)
ATGGTGTATGTAGACGACATTCTGCTCACTGGGACCAACGAGGAACTAGT
GTCGACCATTATCGAACAGATGAAGGAACGGTTTGAAACGGTGGATCTAG
GAGATGCGAAGTTCATCGTGGGAATGGCCATCCACCGCAACCGCGACGCG
GGCACTATTCTCTTGACGCAGGAGGCATACACCAAGGCCGTACTTGCCAA
GTTTGGCATGGCCGACTTGCACCCGACGAAGACGCCGGCGGAGGTTGGAC
CGATGAGCACAGTGGTGGAGGAAGAGACTCTGACGCCGGATGAAACTACA
ATGTTCCGGTCTGCCACAGGTTCGGCTCTATACATATGTAGGAAATCGAG
GCCGGACCTTTCCCACACGATACTGGTGCTTACCAAGAGCATGGCTAAGC
CCGGGACTAAGGCGTGGGCTAAGCTGAAGCGACTGATGCGGTACCTGAAG
GGAACCGCATCGCTGGGGATAACATACAGCGAGGACGCATCGAACGGAGG
CAAACTAACCACTTACGTTGATTCCGACTTTGCAGGCGACATAGACGACA
GGAAATCGACTACTGGGGTTATTATTGAACTCGCAGGTGGCGTGGTAGAC
TCGACGGCTACGAAGCAAACGGTGACGGCTGTCTCGTCGGCTGAGGCGGA
GTATGTTGCAATGTCCAAGGCCTGCAAGATAATCCTCTACTGGCGCCACC
TACTCAAGACTATCAACCGGGAGCAGAAGGAATCAACGATATTGTACGAA
GATAGTACTGGTGCCATGTCAACTAGATAG
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Coding sequence (CDS) from alignment at Scaffold_316:295663..296442+

>EsuBft898_3a-0001 ID=EsuBft898_3a-0001|Name=EsuBft898_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=780bp|location=Sequence derived from alignment at Scaffold_316:295663..296442+ (Ectocarpus subulatus male Bft15b)
ATGGTGTATGTAGACGACATTCTGCTCACTGGGACCAACGAGGAACTAGT
GTCGACCATTATCGAACAGATGAAGGAACGGTTTGAAACGGTGGATCTAG
GAGATGCGAAGTTCATCGTGGGAATGGCCATCCACCGCAACCGCGACGCG
GGCACTATTCTCTTGACGCAGGAGGCATACACCAAGGCCGTACTTGCCAA
GTTTGGCATGGCCGACTTGCACCCGACGAAGACGCCGGCGGAGGTTGGAC
CGATGAGCACAGTGGTGGAGGAAGAGACTCTGACGCCGGATGAAACTACA
ATGTTCCGGTCTGCCACAGGTTCGGCTCTATACATATGTAGGAAATCGAG
GCCGGACCTTTCCCACACGATACTGGTGCTTACCAAGAGCATGGCTAAGC
CCGGGACTAAGGCGTGGGCTAAGCTGAAGCGACTGATGCGGTACCTGAAG
GGAACCGCATCGCTGGGGATAACATACAGCGAGGACGCATCGAACGGAGG
CAAACTAACCACTTACGTTGATTCCGACTTTGCAGGCGACATAGACGACA
GGAAATCGACTACTGGGGTTATTATTGAACTCGCAGGTGGCGTGGTAGAC
TCGACGGCTACGAAGCAAACGGTGACGGCTGTCTCGTCGGCTGAGGCGGA
GTATGTTGCAATGTCCAAGGCCTGCAAGATAATCCTCTACTGGCGCCACC
TACTCAAGACTATCAACCGGGAGCAGAAGGAATCAACGATATTGTACGAA
GATAGTACTGGTGCCATGTCAACTAGATAG
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