EsuBft897_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft897_8a-0001
Unique NameEsuBft897_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_527contigScaffold_527:135110..135470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft897_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length29
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft897_8aEsuBft897_8aEctocarpus subulatus male Bft15bgeneScaffold_527 135110..135470 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft897_8a-0001-exonagat-exon-110164Ectocarpus subulatus male Bft15bexonScaffold_527 135110..135390 -
EsuBft897_8a-0001-exonEsuBft897_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_527 135455..135470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft897_8a-0001-cdsEsuBft897_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_527 135110..135390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft897_8a-0001EsuBft897_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_527 135110..135470 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft897_8a-0001 ID=EsuBft897_8a-0001|Name=EsuBft897_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=297bp|location=Sequence derived from alignment at Scaffold_527:135110..135470- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACACGGCCCTAGGTGGTGACGAGCTGATTGGGCTGACCCTTCGGCG
CGAGAATTTTCAGACCAAGAACCCTAAGTGCAACGAGGGAGAAAGCGAGG
AACCGACTGGGAAGGACGGCAACGAGAGCGTTTACGAAGCGGAGCGGGTC
GAGTTTGGTCGTGCTAGGACTGGCTACAGCGGCACCGGAGCAGCGGCACC
GGAGCAGCGGAACCGGAGCATGCATGCGGACGGCATCGAACCGTGGCGCA
CGGATAAACATCTCTTGTATTGTCAATTATTTCCCGTTTTTTCCTGA
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protein sequence of EsuBft897_8a-0001

>EsuBft897_8 ID=EsuBft897_8|Name=EsuBft897_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=98bp
MYTALGGDELIGLTLRRENFQTKNPKCNEGESEEPTGKDGNESVYEAERV
EFGRARTGYSGTGAAAPEQRNRSMHADGIEPWRTDKHLLYCQLFPVFS
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mRNA from alignment at Scaffold_527:135110..135470-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft897_8a-0001 ID=EsuBft897_8a-0001|Name=EsuBft897_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=361bp|location=Sequence derived from alignment at Scaffold_527:135110..135470- (Ectocarpus subulatus male Bft15b)
ATGTACACGGCCCTAGGTTTGCTAGAGGGAGCTGTACTATCTCAGTAACC
TAGTTTTGCCATCAAAGGAGGAGGGGACAGGTGGTGACGAGCTGATTGGG
CTGACCCTTCGGCGCGAGAATTTTCAGACCAAGAACCCTAAGTGCAACGA
GGGAGAAAGCGAGGAACCGACTGGGAAGGACGGCAACGAGAGCGTTTACG
AAGCGGAGCGGGTCGAGTTTGGTCGTGCTAGGACTGGCTACAGCGGCACC
GGAGCAGCGGCACCGGAGCAGCGGAACCGGAGCATGCATGCGGACGGCAT
CGAACCGTGGCGCACGGATAAACATCTCTTGTATTGTCAATTATTTCCCG
TTTTTTCCTGA
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Coding sequence (CDS) from alignment at Scaffold_527:135110..135470-

>EsuBft897_8a-0001 ID=EsuBft897_8a-0001|Name=EsuBft897_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=297bp|location=Sequence derived from alignment at Scaffold_527:135110..135470- (Ectocarpus subulatus male Bft15b)
ATGTACACGGCCCTAGGTGGTGACGAGCTGATTGGGCTGACCCTTCGGCG
CGAGAATTTTCAGACCAAGAACCCTAAGTGCAACGAGGGAGAAAGCGAGG
AACCGACTGGGAAGGACGGCAACGAGAGCGTTTACGAAGCGGAGCGGGTC
GAGTTTGGTCGTGCTAGGACTGGCTACAGCGGCACCGGAGCAGCGGCACC
GGAGCAGCGGAACCGGAGCATGCATGCGGACGGCATCGAACCGTGGCGCA
CGGATAAACATCTCTTGTATTGTCAATTATTTCCCGTTTTTTCCTGA
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