EsuBft897_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft897_5a-0001
Unique NameEsuBft897_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_527contigScaffold_527:158443..161123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIG0
ProteomeIdEsuBft897_5
Ownerapollo_admin@sb-roscoff.fr
Notecoiled-coil domain-containing protein 108 os:mus musculus gn:ccdc108 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1074
Hectar predicted targeting categoryother localisation
Evalue2.33e-181
EggNOG OGs2CMXN@1|root,2QSJW@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_000130.1
Date last modified2016-06-15
Date creation2016-06-15
Preferred nameCCDC108
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft897_5aEsuBft897_5aEctocarpus subulatus male Bft15bgeneScaffold_527 158443..161123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft897_5a-0001EsuBft897_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_527 158443..161123 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft897_5a-0001-exonagat-exon-110147Ectocarpus subulatus male Bft15bexonScaffold_527 158443..158541 +
EsuBft897_5a-0001-exonagat-exon-110145Ectocarpus subulatus male Bft15bexonScaffold_527 158887..159098 +
EsuBft897_5a-0001-exonagat-exon-110148Ectocarpus subulatus male Bft15bexonScaffold_527 159519..159742 +
EsuBft897_5a-0001-exonagat-exon-110146Ectocarpus subulatus male Bft15bexonScaffold_527 160135..160328 +
EsuBft897_5a-0001-exonEsuBft897_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_527 160779..161123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft897_5a-0001-cdsEsuBft897_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_527 158443..158541 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft897_5a-0001 ID=EsuBft897_5a-0001|Name=EsuBft897_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1074bp|location=Sequence derived from alignment at Scaffold_527:158443..161123+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGGGTGTGCCTCGACCGGTCCAACGTCGACTTTGGTTTTTCTTC
TACCGGAGGACAGGAGACAATCACCCTGACCAATAACTCCGACACCGAGG
TGCACGTGGTGTGGAACCTGAAGCCGCCGGGGGAAGGTGGAGGCGTCAAG
GAAGCCGGGCCTGCTTGTCTTCAAGTGACACCGCTGGAGGCTCGCGTGCC
TGAACGAGGGAGCCTGTCGTTCCGAGTAGAAGTGTTCCCAACCAAGGGCA
ACTGCTACTTTGCCGAGGAGGCCGAGGCGTTCGTGTCCCCTGCAAACCAA
ATGACCTTCAGGACGGTGAAAGATGCTACGCAGCAGCCGCCTTGGTGCCT
ACCCTTGCGCGTGTTGGGCCACACCTTCGTCGGGGAGCAGTTCTTGGCTA
AGGCCTCCCTATCGACGCAGCACACGGGGCAGAAGCTGTGCTTCCCAGCC
TGTCACGTGGGGGACACCGTTTATCAAACCATCAGGTGGGGCCAGGAGAA
GGGCGCAGAACGAACGGGCGTTCGGTGGCCAAAAGTTTCTGGGTTATTGT
GGCTGGCCAGAAATGTGCGCTCTCCACACAACCCGCTGCTGCTGGTGTTA
CGCCTTCTGTTCGGTCGCAGATTGTCAAATCAAGGCAATATCCCCGCGTG
TTTCAACTTCCAGCCTGACGCGAGCGGTGTCTTTGCCATCAAGCCTTCCG
TTGGCCTTGTCCCGGCGGGGGATTTCCAGCTGTGCCTGGTGCGGTTCACA
CCTCCCGGTCCAGGAGGCTACCACCACCGGCTACAATGCGTCCTGAACAA
CGATCCCGGAAGCACCGAAGAAGCGGACCTGTTCGGCCAGGGCGCTTGGC
CGGCCGTCCAGGTGACGTCTGGCGGGGGTGGGGAGGCGGGTGACGGCGAA
CCAGCGCGGTCGCTCGCTGCGGGATCGGTGGGGGCAAGCAGCGGCAGCAG
CATAAGGATTCGGGAGCGTTTGGATAAGGACAAAGGGTCAGTCGTTTATA
TGCGGCCCACCTGTGTGGGGATCGTCTCGTCCGGGGTCGTCAAGGTGAAC
TCGGAGAAGTCCATTGTCGGTTAG
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protein sequence of EsuBft897_5a-0001

>EsuBft897_5 ID=EsuBft897_5|Name=EsuBft897_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=357bp
MNGVCLDRSNVDFGFSSTGGQETITLTNNSDTEVHVVWNLKPPGEGGGVK
EAGPACLQVTPLEARVPERGSLSFRVEVFPTKGNCYFAEEAEAFVSPANQ
MTFRTVKDATQQPPWCLPLRVLGHTFVGEQFLAKASLSTQHTGQKLCFPA
CHVGDTVYQTIRWGQEKGAERTGVRWPKVSGLLWLARNVRSPHNPLLLVL
RLLFGRRLSNQGNIPACFNFQPDASGVFAIKPSVGLVPAGDFQLCLVRFT
PPGPGGYHHRLQCVLNNDPGSTEEADLFGQGAWPAVQVTSGGGGEAGDGE
PARSLAAGSVGASSGSSIRIRERLDKDKGSVVYMRPTCVGIVSSGVVKVN
SEKSIVG
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mRNA from alignment at Scaffold_527:158443..161123+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft897_5a-0001 ID=EsuBft897_5a-0001|Name=EsuBft897_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2681bp|location=Sequence derived from alignment at Scaffold_527:158443..161123+ (Ectocarpus subulatus male Bft15b)
ATGAACGGGGTGTGCCTCGACCGGTCCAACGTCGACTTTGGTTTTTCTTC
TACCGGAGGACAGGAGACAATCACCCTGACCAATAACTCCGACACCGAGG
TCAGCAAGGGTTGTCTGAAGTATCTTCTCGCTGTGAGAGCTCATGCTGCG
ACCTTGAGTGGTAAAATACAAAGCTTGACTACTGCAGGTGTGTGATTTAT
TTGAGCGTTTCCTCAGGGGTCCTGCGTGACGGCGTGATTGCACAGTTATG
TCGTACAGATATCGGAGCGCTCCCATTGATGGTCTCCAAAATAGGCCTGC
AGATGTTCTTGAGGGGGTCCTGAGGCCATGTTCGGCTGTGGCCTGCCAAC
ACAATTTCCTGGCGAGCTTAACAATGGGGGCGACGAGAAACTTCCTTATT
TTCGGCGGTGGAATACTTAAAGTATTGTTTTCCTCAACGGACAGGTGCAC
GTGGTGTGGAACCTGAAGCCGCCGGGGGAAGGTGGAGGCGTCAAGGAAGC
CGGGCCTGCTTGTCTTCAAGTGACACCGCTGGAGGCTCGCGTGCCTGAAC
GAGGGAGCCTGTCGTTCCGAGTAGAAGTGTTCCCAACCAAGGGCAACTGC
TACTTTGCCGAGGAGGCCGAGGCGTTCGTGTCCCCTGCAAACCAAATGAC
CTTCAGGTGATGTACATGAAGGCCTGTATACGGCTAGCTGTACAACAGAC
GTGAGGAATTTCGGCAGCCCTGATCAGTTCTATCCTTTCACAAGGACTCG
GAGCTATCTAGGCCGAGGTCTCACAATTGGGTCGAAAGTAGGAATCGCCC
TCAAGGGTGAAACATTCCATGAAGGGACCCTACTGTAGTTAAAAGCGATT
CATCCACTGCAGGTCGTACCGGATGAGCACCAATCAACCATGCACCTGGT
AGTGTTAGTTTCGGGGTACTTGAGGGTGCACGTATCTGTATCCCAACTCG
TGGGGGATCGGATCGAGCCTCTTCGGCATATTCCTGGCCACGGCCGTTCT
CAACACAATCATGGACGTGTTGACCCTTGCCTCCAATTTTCCGCCGCCGC
ACGGTGGGTTCCATCTCCAACGACAGGACGGTGAAAGATGCTACGCAGCA
GCCGCCTTGGTGCCTACCCTTGCGCGTGTTGGGCCACACCTTCGTCGGGG
AGCAGTTCTTGGCTAAGGCCTCCCTATCGACGCAGCACACGGGGCAGAAG
CTGTGCTTCCCAGCCTGTCACGTGGGGGACACCGTTTATCAAACCATCAG
GTGGGGCCAGGAGAAGGGCGCAGAACGAACGGGCGTTCGGTGGCCAAAAG
GTACCGAAGACCAAGCTTGGCTTGTCAACCCTGTGCCTCAGTTTAATGCG
ATATTAAACGTTAGAAAATAGGCTGTTTTTGGTGTTCCTGTAGCAGAGTG
CTCTTTGGGCTCGCGCGGCCTCCTACCAATTCTCCACCTAGTTCAAGAAA
ACGGTGACAGTTGGACTGCAAGCAGAACAAACGCCTTTGAAGAGAAACAC
TCTACGCCTTTTGGCCGAGGTTCCAGAATATACCTCTTCATGAGAACCTT
TGGTCTGGCGTGTTCCTTTCAACCTTGTCGCCACTGCATTTACGTCTGAT
TGAACCCTGTTTAACAAGGGGGAGCACCTCCGCCTCCTAAGCGATCGATG
CTGAACGCTGGTGGAGACAGGTTATTTACCACTTGAAAACAGTTTCTGGG
TTATTGTGGCTGGCCAGAAATGTGCGCTCTCCACACAACCCGCTGCTGCT
GGTGTTACGCCTTCTGTTCGGTCGCAGATTGTCAAATCAAGGCAATATCC
CCGCGTGTTTCAACTTCCAGCCTGACGCGAGCGGTGTCTTTGCCATCAAG
CCTTCCGTTGGCCTTGTCCCGGCGGGGGATTTCCAGGTACAGCAACGCTT
CGACATCTTGCTGTGCACAAACTGTGCCACATGAAACACGCACGGGTAGG
GTAGGGTTGTGCAGCTAGTCACATGCGAAAATAGCCAGAGATGCGTTACC
CTTGATGCAGAATGCGACACCTACTAATTGCTGCGAGTAGGGATTAGTCT
AGGGATTGCTTCTGATCTCGAGGCGTTTCTCTTGACGTTTTCGCCCGCGA
AATACGTTATGTATCTTTCATCGGGAACGCCCCCGGCACCCTGCCACTGA
GTATCATCTGTGTTCGGGTAGGATGGGCCAACAGTGGAAATATACCCCAT
CATGCGGGTCCAAATCGCCCTACCATCCATGTCTCAATGACATTCATCGA
TCCCCATTCTGCCGGGTACAGCGTGTCGAATTTCTCATCATCCTCAAATG
GATTCTGGTTTCCCTTTCACCCATCACCCGGGACAGCTGTGCCTGGTGCG
GTTCACACCTCCCGGTCCAGGAGGCTACCACCACCGGCTACAATGCGTCC
TGAACAACGATCCCGGAAGCACCGAAGAAGCGGACCTGTTCGGCCAGGGC
GCTTGGCCGGCCGTCCAGGTGACGTCTGGCGGGGGTGGGGAGGCGGGTGA
CGGCGAACCAGCGCGGTCGCTCGCTGCGGGATCGGTGGGGGCAAGCAGCG
GCAGCAGCATAAGGATTCGGGAGCGTTTGGATAAGGACAAAGGGTCAGTC
GTTTATATGCGGCCCACCTGTGTGGGGATCGTCTCGTCCGGGGTCGTCAA
GGTGAACTCGGAGAAGTCCATTGTCGGTTAG
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Coding sequence (CDS) from alignment at Scaffold_527:158443..161123+

>EsuBft897_5a-0001 ID=EsuBft897_5a-0001|Name=EsuBft897_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1074bp|location=Sequence derived from alignment at Scaffold_527:158443..161123+ (Ectocarpus subulatus male Bft15b)
ATGAACGGGGTGTGCCTCGACCGGTCCAACGTCGACTTTGGTTTTTCTTC
TACCGGAGGACAGGAGACAATCACCCTGACCAATAACTCCGACACCGAGG
TGCACGTGGTGTGGAACCTGAAGCCGCCGGGGGAAGGTGGAGGCGTCAAG
GAAGCCGGGCCTGCTTGTCTTCAAGTGACACCGCTGGAGGCTCGCGTGCC
TGAACGAGGGAGCCTGTCGTTCCGAGTAGAAGTGTTCCCAACCAAGGGCA
ACTGCTACTTTGCCGAGGAGGCCGAGGCGTTCGTGTCCCCTGCAAACCAA
ATGACCTTCAGGACGGTGAAAGATGCTACGCAGCAGCCGCCTTGGTGCCT
ACCCTTGCGCGTGTTGGGCCACACCTTCGTCGGGGAGCAGTTCTTGGCTA
AGGCCTCCCTATCGACGCAGCACACGGGGCAGAAGCTGTGCTTCCCAGCC
TGTCACGTGGGGGACACCGTTTATCAAACCATCAGGTGGGGCCAGGAGAA
GGGCGCAGAACGAACGGGCGTTCGGTGGCCAAAAGTTTCTGGGTTATTGT
GGCTGGCCAGAAATGTGCGCTCTCCACACAACCCGCTGCTGCTGGTGTTA
CGCCTTCTGTTCGGTCGCAGATTGTCAAATCAAGGCAATATCCCCGCGTG
TTTCAACTTCCAGCCTGACGCGAGCGGTGTCTTTGCCATCAAGCCTTCCG
TTGGCCTTGTCCCGGCGGGGGATTTCCAGCTGTGCCTGGTGCGGTTCACA
CCTCCCGGTCCAGGAGGCTACCACCACCGGCTACAATGCGTCCTGAACAA
CGATCCCGGAAGCACCGAAGAAGCGGACCTGTTCGGCCAGGGCGCTTGGC
CGGCCGTCCAGGTGACGTCTGGCGGGGGTGGGGAGGCGGGTGACGGCGAA
CCAGCGCGGTCGCTCGCTGCGGGATCGGTGGGGGCAAGCAGCGGCAGCAG
CATAAGGATTCGGGAGCGTTTGGATAAGGACAAAGGGTCAGTCGTTTATA
TGCGGCCCACCTGTGTGGGGATCGTCTCGTCCGGGGTCGTCAAGGTGAAC
TCGGAGAAGTCCATTGTCGGTTAG
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