EsuBft897_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft897_2a-0001
Unique NameEsuBft897_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_527contigScaffold_527:198163..199960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIG2
ProteomeIdEsuBft897_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length85
Hectar predicted targeting categoryother localisation
Evalue7.92e-105
EggNOG OGs28KK0@1|root,2QT1F@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
DescriptionProtein of unknown function (DUF1336)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft897_2aEsuBft897_2aEctocarpus subulatus male Bft15bgeneScaffold_527 198163..199960 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft897_2a-0001-exonagat-exon-110122Ectocarpus subulatus male Bft15bexonScaffold_527 198163..198375 +
EsuBft897_2a-0001-exonEsuBft897_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_527 199320..199960 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft897_2a-0001-exonagat-five_prime_utr-14816Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_527 198163..198227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft897_2a-0001-cdsEsuBft897_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_527 198228..198375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft897_2a-0001EsuBft897_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_527 198228..199960 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft897_2a-0001 ID=EsuBft897_2a-0001|Name=EsuBft897_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=854bp|location=Sequence derived from alignment at Scaffold_527:198163..199960+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGTGCACCCGATCTTGGCTACTCGCTCCCCGGAGGGGTACCCGGTTTCT
TGCCCCTACCCGAAAATGGCTGGGCTGTTCGGCCAAACCCCATGCACACA
AGTACACGTCAGCAATGCCTTGCCCTCGTATTCGGACGTTCTGACGGCAG
GCGGGGGCGGACCCACCGCTGGCGGTGACTCTCTCGCTTGGGGGAAACGG
CATCAGGCAGGCGAGTGTACGCCAAGCCGCCACCCACACACAACCCTGCC
GCGGCCCTCTTCTCCTTCATCAAGACCTATGTCGAAGTGGCTGGGATTGC
GAAGATCGGGCGCCCGGTCCCCCACATCGTCGGCAAGTGCCCTTCCCCCT
GATGACGTTCCCGCTTTCCTCGGGAAGCAAAATAGCAGCGTTGCGGCATG
TTCTACTCCAACGCCGAGGACGGGCCGGAGACGCTCGAGCGAGGAGACCG
TTGACGCAGACACATCCCGACGCTCGTCAAGAGATGACGAGGACGCTCAA
AAAGGGGCTGCACCCGCGGATCATGGGCGTGGTCCTGGTGATGGTGTGTC
GGACGAATGCTGTGACTGGGAAGTGGTCCAACATACCTCTGCCGATTTCT
CAGGCCTTGTTAGTGTGGGCGGTGAAGCGGAAGCCGAGAGACCACTTTCT
CCGGGAGTGGATTTCAGCGCGGCGTACATGGTTGATAGGGAAGGAGAGGA
AGGGCGGCAGGCCGGAGCTAGTGCCTCTGATTGCGACGGGAATGACACCT
GCAGATGGAGAGACGCGGCCAGCATCCATAGCTTTCTTGTCCGCGGGCCA
ACTTATCTTCAGGTGGGTGCATCTTTGTCCTGTGCACCAGCAAAGGCGAA
CTGA
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protein sequence of EsuBft897_2a-0001

>EsuBft897_2 ID=EsuBft897_2|Name=EsuBft897_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=262bp
MAGLFGQTPCTQVHVSNALPSYSDVLTAGGGGPTAGGDSLAWGKRHQAGE
CTPSRHPHTTLPRPSSPSSRPMSKWLGLRRSGARSPTSSASALPPDDVPA
FLGKQNSSVAACSTPTPRTGRRRSSEETVDADTSRRSSRDDEDAQKGAAP
ADHGRGPGDGVSDECCDWEVVQHTSADFSGLVSVGGEAEAERPLSPGVDF
SAAYMVDREGEEGRQAGASASDCDGNDTCRWRDAASIHSFLVRGPTYLQV
GASLSCAPAKAN
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mRNA from alignment at Scaffold_527:198163..199960+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft897_2a-0001 ID=EsuBft897_2a-0001|Name=EsuBft897_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1798bp|location=Sequence derived from alignment at Scaffold_527:198163..199960+ (Ectocarpus subulatus male Bft15b)
GGGTGCACCCGATCTTGGCTACTCGCTCCCCGGAGGGGTACCCGGTTTCT
TGCCCCTACCCGAAAATGGCTGGGCTGTTCGGCCAAACCCCATGCACACA
AGTACACGTCAGCAATGCCTTGCCCTCGTATTCGGACGTTCTGACGGCAG
GCGGGGGCGGACCCACCGCTGGCGGTGACTCTCTCGCTTGGGGGAAACGG
CATCAGGCAGGCGGTGAACGAGAAGAGCTGTGGATGAATACCTCACTCAC
GAGATGCGACACACACGAGACGCATCTAAAAAATATACAAAATTGTCTGC
TTCCTGCTTCTTTCTCATTGGTGACGAACGAGCGGCCAGCGGTGTGCGTC
CTACACGTGATTGTGTGCATGTGGGTTTTCGCCGAACAGCCCCGCCATCT
TCGGACATGGGAAAGAAACACCGGGTACTCCTCCGGGGGGTTGAGTAGCC
AAGATCGGGTGCACCCGGTGGAAAGACGGTCAAGGTCGGGTAGAGGCTGG
CGTCGGCCAATCAGACGGTGTCGTGCGGTCGCTTCCAGTAGCGTCTTGTA
GGGGTACCCGATTATGGCCGTGTTTGGACCGGGTGCACCCGATTTTGGCC
ACTGCTCTTCCTAGGCCCCCATACAGGATTTGGTATGGTGGCGACCCCAT
GTATGTACTGAACCTCGACGTCTTGCGATTTTTCTTATTCTATGGTCTAT
GGGCGAGCGGCACTACTGTAGTCTAGACCACCAGGCTGGTGGGTTAGCCA
GTCGAACGTGCAGGCATAATCTTTTCATGTGCAGCGTTGTTGGCCGTGAA
ACACACCTCCAGGAGAGCCTCCTCATCGTATTCTTGGTCCGGAAAAGGGT
CGTCTTCGAGCGTGAGGTAGAGCATCGCGGGTTCTCTCACATCTCAAAGG
TTAGCGAGAATCCACCCTTGACGGCCCGTCCGAAGTATGAATGATGTGAA
AGTCACGAGCACGAGCGTATCTTGCTCCCGCATCTTGCACGAGCCCGCCC
AATTGGATTTATCGAGGTACACATGCGCTCGGAAGCCCGATTGTAGGAAT
CGGGGCAATGAAACGAAACGAATGATGCCGCAACTCTTCCCGAGACGGCA
CAGCGGCAGCGGCGAAAAATAGACTTGCTTGAGATGAGAGAAAGGTAAAG
GTGACAGAGTGTACGCCAAGCCGCCACCCACACACAACCCTGCCGCGGCC
CTCTTCTCCTTCATCAAGACCTATGTCGAAGTGGCTGGGATTGCGAAGAT
CGGGCGCCCGGTCCCCCACATCGTCGGCAAGTGCCCTTCCCCCTGATGAC
GTTCCCGCTTTCCTCGGGAAGCAAAATAGCAGCGTTGCGGCATGTTCTAC
TCCAACGCCGAGGACGGGCCGGAGACGCTCGAGCGAGGAGACCGTTGACG
CAGACACATCCCGACGCTCGTCAAGAGATGACGAGGACGCTCAAAAAGGG
GCTGCACCCGCGGATCATGGGCGTGGTCCTGGTGATGGTGTGTCGGACGA
ATGCTGTGACTGGGAAGTGGTCCAACATACCTCTGCCGATTTCTCAGGCC
TTGTTAGTGTGGGCGGTGAAGCGGAAGCCGAGAGACCACTTTCTCCGGGA
GTGGATTTCAGCGCGGCGTACATGGTTGATAGGGAAGGAGAGGAAGGGCG
GCAGGCCGGAGCTAGTGCCTCTGATTGCGACGGGAATGACACCTGCAGAT
GGAGAGACGCGGCCAGCATCCATAGCTTTCTTGTCCGCGGGCCAACTTAT
CTTCAGGTGGGTGCATCTTTGTCCTGTGCACCAGCAAAGGCGAACTGA
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Coding sequence (CDS) from alignment at Scaffold_527:198163..199960+

>EsuBft897_2a-0001 ID=EsuBft897_2a-0001|Name=EsuBft897_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=789bp|location=Sequence derived from alignment at Scaffold_527:198163..199960+ (Ectocarpus subulatus male Bft15b)
ATGGCTGGGCTGTTCGGCCAAACCCCATGCACACAAGTACACGTCAGCAA
TGCCTTGCCCTCGTATTCGGACGTTCTGACGGCAGGCGGGGGCGGACCCA
CCGCTGGCGGTGACTCTCTCGCTTGGGGGAAACGGCATCAGGCAGGCGAG
TGTACGCCAAGCCGCCACCCACACACAACCCTGCCGCGGCCCTCTTCTCC
TTCATCAAGACCTATGTCGAAGTGGCTGGGATTGCGAAGATCGGGCGCCC
GGTCCCCCACATCGTCGGCAAGTGCCCTTCCCCCTGATGACGTTCCCGCT
TTCCTCGGGAAGCAAAATAGCAGCGTTGCGGCATGTTCTACTCCAACGCC
GAGGACGGGCCGGAGACGCTCGAGCGAGGAGACCGTTGACGCAGACACAT
CCCGACGCTCGTCAAGAGATGACGAGGACGCTCAAAAAGGGGCTGCACCC
GCGGATCATGGGCGTGGTCCTGGTGATGGTGTGTCGGACGAATGCTGTGA
CTGGGAAGTGGTCCAACATACCTCTGCCGATTTCTCAGGCCTTGTTAGTG
TGGGCGGTGAAGCGGAAGCCGAGAGACCACTTTCTCCGGGAGTGGATTTC
AGCGCGGCGTACATGGTTGATAGGGAAGGAGAGGAAGGGCGGCAGGCCGG
AGCTAGTGCCTCTGATTGCGACGGGAATGACACCTGCAGATGGAGAGACG
CGGCCAGCATCCATAGCTTTCTTGTCCGCGGGCCAACTTATCTTCAGGTG
GGTGCATCTTTGTCCTGTGCACCAGCAAAGGCGAACTGA
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