EsuBft896_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft896_3a-0001
Unique NameEsuBft896_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_377contigScaffold_377:4396..5523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft896_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length112
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptiontrafficking protein particle complex subunit 2, putative
Ec32 orthologEc-19_000840.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft896_3aEsuBft896_3aEctocarpus subulatus male Bft15bgeneScaffold_377 4396..5523 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft896_3a-0001-exonEsuBft896_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_377 4396..5523 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft896_3a-0001-exonagat-three_prime_utr-22842Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_377 4396..5128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft896_3a-0001-cdsEsuBft896_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_377 5129..5497 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft896_3a-0001-exonagat-five_prime_utr-14811Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_377 5498..5523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft896_3a-0001EsuBft896_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_377 5129..5497 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft896_3a-0001 ID=EsuBft896_3a-0001|Name=EsuBft896_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1128bp|location=Sequence derived from alignment at Scaffold_377:4396..5523- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCTGCCAGATCAGTCAAGCGACGAAATGTTCAGTGCTTCGAGGGGTGCC
CTTGCAAGGAGTCGGAAGTCCGATGCTCTGGTGACAAGATACAGGGCAGC
ACTGCTGGATGACAACGAGAAACAGCGACGACTCAATGACGAGACGAGGA
AGCTTAAGCTGCGCATCTCGGTGCTGGAGGCGGAGCTTAAGGAAGCGAAG
CAGAACGAGGAGAGTGTGAAGGAAGCGGCAGGAACAGCCCCTGGTGTTGT
TGGGATCGACCACAACCTACTGCGTGCTTTGCAGCCTGTTGGAGTTCGCT
CCCTCGTCGGTCTCAGCGACCACGAGTCTCTCGAGGTCAGTGTATTGAGG
CTTTTGTGCGCGTCATCAGAGTACCCAAGACCGGCTGCAACGTAGGATAC
ATTTACATGTTTGTACATCCTAGCACTTGCTTGGTCGGCCGGCTGCACGA
CCCTCCGTCCCTCTCTCGCTCTCGATCTGTGAGTGTCTCTTTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCATGTGTCCCTCCTCCT
CTCCCCCTCTCTTTCTGTCTCTCTCTCTCTCTGTCTCTCCCTAAGCCGGC
CAGTTCCGGGAGCGACGAGCACGCCACATTACTGCATGCCGCCGACACAG
CAGCAGTTGTAAAATAAGTAGATATGTGCTCCACAGACCGCTGCCGAATA
ATGCATACAACATGCATACAGCAGCGTGTACTTGGTTGTTCTTGACGCAA
AAGGCCATTATAACATATTCTGTTGAAGCGTGAGATAGCGCGGCAGTGCG
GTATGTAAGTTCCTTCCATTGCATTGGTTTCGCTACCAATCTAGCAGAGT
GTGGTTCACCCCTTGTCGTTTGTCGCCTCTACAGGGTGACTGCTGCCATT
GCTGCTCTTCTATTGAGAAAGTGGAGGGGTCGCGCTTCGTTTAACGGCAA
CGAAAAGGTCACGAAGGCTCCGCGCCCGTCGGATGCAGAACCAATATTGT
ATGTGATATCTACTGATGACCGAGCCATGCAGATAGTTTTCATGTGCTGA
TATCCGCAGTGCAACCTTCGTCGCATCGTCGTTATCATCCCACGTGCCAC
CGCCTGCAGAAGTTGTACGAGTTCCTGG
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protein sequence of EsuBft896_3a-0001

>EsuBft896_3 ID=EsuBft896_3|Name=EsuBft896_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=122bp
MFSASRGALARSRKSDALVTRYRAALLDDNEKQRRLNDETRKLKLRISVL
EAELKEAKQNEESVKEAAGTAPGVVGIDHNLLRALQPVGVRSLVGLSDHE
SLEVSVLRLLCASSEYPRPAAT
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mRNA from alignment at Scaffold_377:4396..5523-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft896_3a-0001 ID=EsuBft896_3a-0001|Name=EsuBft896_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1128bp|location=Sequence derived from alignment at Scaffold_377:4396..5523- (Ectocarpus subulatus male Bft15b)
CTCTGCCAGATCAGTCAAGCGACGAAATGTTCAGTGCTTCGAGGGGTGCC
CTTGCAAGGAGTCGGAAGTCCGATGCTCTGGTGACAAGATACAGGGCAGC
ACTGCTGGATGACAACGAGAAACAGCGACGACTCAATGACGAGACGAGGA
AGCTTAAGCTGCGCATCTCGGTGCTGGAGGCGGAGCTTAAGGAAGCGAAG
CAGAACGAGGAGAGTGTGAAGGAAGCGGCAGGAACAGCCCCTGGTGTTGT
TGGGATCGACCACAACCTACTGCGTGCTTTGCAGCCTGTTGGAGTTCGCT
CCCTCGTCGGTCTCAGCGACCACGAGTCTCTCGAGGTCAGTGTATTGAGG
CTTTTGTGCGCGTCATCAGAGTACCCAAGACCGGCTGCAACGTAGGATAC
ATTTACATGTTTGTACATCCTAGCACTTGCTTGGTCGGCCGGCTGCACGA
CCCTCCGTCCCTCTCTCGCTCTCGATCTGTGAGTGTCTCTTTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCATGTGTCCCTCCTCCT
CTCCCCCTCTCTTTCTGTCTCTCTCTCTCTCTGTCTCTCCCTAAGCCGGC
CAGTTCCGGGAGCGACGAGCACGCCACATTACTGCATGCCGCCGACACAG
CAGCAGTTGTAAAATAAGTAGATATGTGCTCCACAGACCGCTGCCGAATA
ATGCATACAACATGCATACAGCAGCGTGTACTTGGTTGTTCTTGACGCAA
AAGGCCATTATAACATATTCTGTTGAAGCGTGAGATAGCGCGGCAGTGCG
GTATGTAAGTTCCTTCCATTGCATTGGTTTCGCTACCAATCTAGCAGAGT
GTGGTTCACCCCTTGTCGTTTGTCGCCTCTACAGGGTGACTGCTGCCATT
GCTGCTCTTCTATTGAGAAAGTGGAGGGGTCGCGCTTCGTTTAACGGCAA
CGAAAAGGTCACGAAGGCTCCGCGCCCGTCGGATGCAGAACCAATATTGT
ATGTGATATCTACTGATGACCGAGCCATGCAGATAGTTTTCATGTGCTGA
TATCCGCAGTGCAACCTTCGTCGCATCGTCGTTATCATCCCACGTGCCAC
CGCCTGCAGAAGTTGTACGAGTTCCTGG
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Coding sequence (CDS) from alignment at Scaffold_377:4396..5523-

>EsuBft896_3a-0001 ID=EsuBft896_3a-0001|Name=EsuBft896_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=369bp|location=Sequence derived from alignment at Scaffold_377:4396..5523- (Ectocarpus subulatus male Bft15b)
ATGTTCAGTGCTTCGAGGGGTGCCCTTGCAAGGAGTCGGAAGTCCGATGC
TCTGGTGACAAGATACAGGGCAGCACTGCTGGATGACAACGAGAAACAGC
GACGACTCAATGACGAGACGAGGAAGCTTAAGCTGCGCATCTCGGTGCTG
GAGGCGGAGCTTAAGGAAGCGAAGCAGAACGAGGAGAGTGTGAAGGAAGC
GGCAGGAACAGCCCCTGGTGTTGTTGGGATCGACCACAACCTACTGCGTG
CTTTGCAGCCTGTTGGAGTTCGCTCCCTCGTCGGTCTCAGCGACCACGAG
TCTCTCGAGGTCAGTGTATTGAGGCTTTTGTGCGCGTCATCAGAGTACCC
AAGACCGGCTGCAACGTAG
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