EsuBft896_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft896_2a-0001
Unique NameEsuBft896_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_377contigScaffold_377:232..1568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G495
ProteomeIdEsuBft896_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length104
Hectar predicted targeting categoryother localisation
Evalue4.12e-30
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Description5'-3' exodeoxyribonuclease activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft896_2aEsuBft896_2aEctocarpus subulatus male Bft15bgeneScaffold_377 232..1568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft896_2a-0001EsuBft896_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_377 232..756 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft896_2a-0001-exonagat-exon-41729Ectocarpus subulatus male Bft15bexonScaffold_377 232..237 +
EsuBft896_2a-0001-exonEsuBft896_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_377 297..503 +
EsuBft896_2a-0001-exonagat-exon-41731Ectocarpus subulatus male Bft15bexonScaffold_377 559..575 +
EsuBft896_2a-0001-exonagat-exon-41730Ectocarpus subulatus male Bft15bexonScaffold_377 753..1568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft896_2a-0001-cdsEsuBft896_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_377 232..237 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft896_2a-0001-exonagat-three_prime_utr-22841Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_377 757..1568 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft896_2a-0001 ID=EsuBft896_2a-0001|Name=EsuBft896_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1046bp|location=Sequence derived from alignment at Scaffold_377:232..1568+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGGCAGGCGAGGATGCTAGCAGGCCGAAGAAAAAGGTAACACC
CGAGATAGCTAGTAGTCGCCCCCCGAATGCTAGCAGCAGGACGTCTCGCG
CTCGAGGTCCTCAAGAAACAAACAACTACCGCGCACACGGCTTCAGCAGA
CTCCCGGGGGAGACTGAAGATTACACCAAGTGGACCGTGCCTAAGCTTCG
CGAGTTTCTAAGTGCTACTGGTCGGAAAGGGTAGAGCGATGTACGCACAC
ACGCGAACCTATGTTGGTCCGCATACAAAAGAGACCACACACCACGTTCC
GCTTCTGACCCAGCGCACATGCAAACGGCTGCTGTTAATAAAGTTCGGGG
CGGATATCNCTTGACGTTTCGTAATATTTCTGCCAGACTGCCGTTACTGG
CATCCGAGTGCGCCTGTCGACCATCCAGCAGCAGGTAGAGCGATGTACGC
ACACACGCGAACCTATGTTGGTCCGCATACAAAAGAGACCACACACCACG
TTCCGCTTCTGACCCAGCGCACATGCAAACGGCTGCTGTTAATAAAGTTC
GGGGCGGATATCCCGATTGGATTAAGTAGTACTACTGTATGTATAAGAAA
TGGCGCCTGAATGGTACCCCACAAGTCGTCCGATTTTGGACTGTAGTTGA
ATTGTTCGCGTACGGTGGACCACCCTCAAACCAGATTAAGTACACCATTG
TCGCCGAATATGTGCAATTCAGCCCCCCTCGCAGTCTGTTTACGGTAATG
GTCACATTGATCACAAGTCAGATATCGATGCGCGTCAACCTCTCTGCAAC
AGCAGTAGGTCGAACACGGGATTATTGTGCGTAGGGTAACACCGAACCTA
GAGGTTTTGGTTTCTTCGCGCTCTGTTCGAGGCAGCGATGGGGTACGAGA
TGCACGCGGCGACTGCACGTGGAGATAGCAAATTGTATCGGAAGATAGAC
ATTGTACTTCGCCTAAGAAAAGCGGGTGGGTTTTGGTGTGCGTCATCAGC
TAAGCATGAACGTATATGCGCCCCACACGCTTGGGATGCTCCCCTT
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protein sequence of EsuBft896_2a-0001

>EsuBft896_2 ID=EsuBft896_2|Name=EsuBft896_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=77bp
MSAAGEDASRPKKKVTPEIASSRPPNASSRTSRARGPQETNNYRAHGFSR
LPGETEDYTKWTVPKLREFLSATGRKG
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mRNA from alignment at Scaffold_377:232..1568+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft896_2a-0001 ID=EsuBft896_2a-0001|Name=EsuBft896_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1337bp|location=Sequence derived from alignment at Scaffold_377:232..1568+ (Ectocarpus subulatus male Bft15b)
ATGTCTGTCCGCTGACCGGGGGCGAATGGGACCCACCGCTGGGTACAGCA
CAAGCGAAGGGGCAGGCGGCAGGCGAGGATGCTAGCAGGCCGAAGAAAAA
GGTAACACCCGAGATAGCTAGTAGTCGCCCCCCGAATGCTAGCAGCAGGA
CGTCTCGCGCTCGAGGTCCTCAAGAAACAAACAACTACCGCGCACACGGC
TTCAGCAGACTCCCGGGGGAGACTGAAGATTACACCAAGTGGACCGTGCC
TAAGCTTCGCGAGTTTCTAAGTGTGAGTAAATTATGGTTTTTGGCGACAT
TTTTTATAGGAGAACTGCTGTCAGTAGGCTACTGGTCGGAAAGGGTAATT
ACTAATTACAGTCGTAGTTGTGACAGAATATTTGGTCCATAGACTGTTGC
TACTTCGAAGTATCTTTTGGGCAAAGGATGCATCTTGAGTTAAAAACTTG
ACGTTTCGTTATATTTCTGCCAGACTGCCGTTACTGGCATCCGAGTGCGC
CTGTCGACCATCCAGCAGCAGGTAGAGCGATGTACGCACACACGCGAACC
TATGTTGGTCCGCATACAAAAGAGACCACACACCACGTTCCGCTTCTGAC
CCAGCGCACATGCAAACGGCTGCTGTTAATAAAGTTCGGGGCGGATATCN
CTTGACGTTTCGTAATATTTCTGCCAGACTGCCGTTACTGGCATCCGAGT
GCGCCTGTCGACCATCCAGCAGCAGGTAGAGCGATGTACGCACACACGCG
AACCTATGTTGGTCCGCATACAAAAGAGACCACACACCACGTTCCGCTTC
TGACCCAGCGCACATGCAAACGGCTGCTGTTAATAAAGTTCGGGGCGGAT
ATCCCGATTGGATTAAGTAGTACTACTGTATGTATAAGAAATGGCGCCTG
AATGGTACCCCACAAGTCGTCCGATTTTGGACTGTAGTTGAATTGTTCGC
GTACGGTGGACCACCCTCAAACCAGATTAAGTACACCATTGTCGCCGAAT
ATGTGCAATTCAGCCCCCCTCGCAGTCTGTTTACGGTAATGGTCACATTG
ATCACAAGTCAGATATCGATGCGCGTCAACCTCTCTGCAACAGCAGTAGG
TCGAACACGGGATTATTGTGCGTAGGGTAACACCGAACCTAGAGGTTTTG
GTTTCTTCGCGCTCTGTTCGAGGCAGCGATGGGGTACGAGATGCACGCGG
CGACTGCACGTGGAGATAGCAAATTGTATCGGAAGATAGACATTGTACTT
CGCCTAAGAAAAGCGGGTGGGTTTTGGTGTGCGTCATCAGCTAAGCATGA
ACGTATATGCGCCCCACACGCTTGGGATGCTCCCCTT
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Coding sequence (CDS) from alignment at Scaffold_377:232..1568+

>EsuBft896_2a-0001 ID=EsuBft896_2a-0001|Name=EsuBft896_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=234bp|location=Sequence derived from alignment at Scaffold_377:232..1568+ (Ectocarpus subulatus male Bft15b)
ATGTCTGCGGCAGGCGAGGATGCTAGCAGGCCGAAGAAAAAGGTAACACC
CGAGATAGCTAGTAGTCGCCCCCCGAATGCTAGCAGCAGGACGTCTCGCG
CTCGAGGTCCTCAAGAAACAAACAACTACCGCGCACACGGCTTCAGCAGA
CTCCCGGGGGAGACTGAAGATTACACCAAGTGGACCGTGCCTAAGCTTCG
CGAGTTTCTAAGTGCTACTGGTCGGAAAGGGTAG
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