EsuBft895_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft895_6a-0001
Unique NameEsuBft895_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:609851..611379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft895_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length141
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft895_6aEsuBft895_6aEctocarpus subulatus male Bft15bgeneScaffold_242 609851..611379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_6a-0001EsuBft895_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 610709..611331 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_6a-0001-exonagat-exon-60882Ectocarpus subulatus male Bft15bexonScaffold_242 609851..610853 -
EsuBft895_6a-0001-exonagat-exon-60881Ectocarpus subulatus male Bft15bexonScaffold_242 610909..611123 -
EsuBft895_6a-0001-exonEsuBft895_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 611179..611379 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_6a-0001-exonagat-three_prime_utr-22837Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 609851..610708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_6a-0001-cdsEsuBft895_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 610709..610853 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_6a-0001-exonagat-five_prime_utr-14807Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 611332..611379 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft895_6a-0001 ID=EsuBft895_6a-0001|Name=EsuBft895_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1419bp|location=Sequence derived from alignment at Scaffold_242:609851..611379- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GACCTCGCGAAGAGGGCCGAGGACGCTGGGGTCGCAGTTATTGTATACAT
GGATGAGAGCTTTGTTCACCAGGCGCATGGTTCCGCGTACTCGTACTTTC
CTTCTGACGATAAGGGGGTTGTGCAGGATGGGACAGGCCGTACAACGGGG
AAATGTTTGCGTATGATCATGGTGCATGCGATCACGAAGCACAGGCCCTT
GGAGGGATTTCCTATCCGTGAGGGTTGGTTCAAGGCTAAGGAAAATCGTG
CGAAGAAGATTAAGCCTGGCGAGGCGGATTTCGAAATGTCAGATGAGCAG
ACAGCAGAATTTCTGTGGCAGGCCAAGTTGGCAACCGGAGATTATCATAA
CGCCATGACGGATGGGATGTTCATGCAGTGGTTGAAGCACCGACTTACCC
CGGCCTTCGATGCGCATTCAAGAACAAGAAGATGTTTCTCGTTCTCGATA
ACGCCTCATACCACCACTGCTTTGACGAGGAGGTTAAGGTGCCCGAAACC
AACAGTAAGAAGTACAACGTCGAACTCTTGCGCAAGTACGGTTGCAGGTC
GTTCAAGGTGACGCGTGAGTCGGAGGGTAAGGCTGCTGAGTACAACTTTG
AGGTCCCGGCGCAGGGGTCGCTACCCAATGCGAACCGCAAGAATGGCGTC
AGCAAAGAAGAGATAGCCTCCGTCACTCGGACGTACTTCAAAAATAGTTT
CCCACAATAGGTCGAGGAAAAGGCTGAGACGTACATGAGGGAGAAGGGGT
GGGGGTTAATTTGGACACCGCCGTACATGCCGACTTTCCAGCCGATCGAG
CTGTTCTGGCAGCACGGCAAGCATTACGTGAGCATTCATTTTGAGAAGGG
GCGGAACATGTTGGATGTCTGGAAGAAAATCTGTCTCGGTTGGTATGGAG
ACCTGGAATGAGACGGTCAGGAGGGGGGGTGGAAGGCAGCCAACTGTGGA
AAGTTGGTGCAGCATGCCATTGGCAAGATGGAAGAGTGGATCGGCCTGTA
TGGTGGAAACCTGAGCCGCACGGTCGGTAGCCTTGATATCCAGTGGCAGA
GTACCAAGAGGCTACGGCCGAGGATGAGATAGAGGATGGGGTGGAGGAGC
AGACGGATGAGTGGCTGGGTGAGGACGCAGAAGATGCCATTGAGGGCTGA
AAAAAATGCTAAAAACAAATGCCCTTTTTTGAGCCAATATTTTTCGACTT
TGATTCCCGAACAGCGACAATAAGGGGCTGCACAGAAGGCGCCATTCTGA
GTGCAAGCTGAAATATTGTTTGATATTTAGCAATTGAGATGGCTGTATCA
TCCTGTTCAACCAATATATGGATCACTTGTGCAAGCCCTGGGGCCGCATC
GTTGGAACACCGCGCTTCAATATTTTTGGAACTTCGCCGGGTATGATAAC
ACACTAATTTCGTAATACT
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protein sequence of EsuBft895_6a-0001

>EsuBft895_6 ID=EsuBft895_6|Name=EsuBft895_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=170bp
MDESFVHQAHGSAYSYFPSDDKGVVQDGTGRTTGKCLRMIMVHAITKHRP
LEGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYH
NAMTDGMFMQWLKHRLTPAFDAHSRTRRCFSFSITPHTTTALTRRLRCPK
PTVRSTTSNSCASTVAGRSR
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mRNA from alignment at Scaffold_242:609851..611379-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft895_6a-0001 ID=EsuBft895_6a-0001|Name=EsuBft895_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1529bp|location=Sequence derived from alignment at Scaffold_242:609851..611379- (Ectocarpus subulatus male Bft15b)
GACCTCGCGAAGAGGGCCGAGGACGCTGGGGTCGCAGTTATTGTATACAT
GGATGAGAGCTTTGTTCACCAGGCGCATGGTTCCGCGTACTCGTACTTTC
CTTCTGACGATAAGGGGGTTGTGCAGGATGGGACAGGCCGTACAACGGGG
AAATGTTTGCGTATGATCATGGTGCATGCGATCACGAAGCACAGGCCCTT
GGTCGATCTACAGGAGGGATTTCCTGTCCGTGAGGGTTTGTTCAAGGCAN
CTACAGGAGGGATTTCCTATCCGTGAGGGTTGGTTCAAGGCTAAGGAAAA
TCGTGCGAAGAAGATTAAGCCTGGCGAGGCGGATTTCGAAATGTCAGATG
AGCAGACAGCAGAATTTCTGTGGCAGGCCAAGTTGGCAACCGGAGATTAT
CATAACGCCATGACGGATGGGATGTTCATGCAGTGGTTGAAGCACCGACT
TACCCCGGCCTTCGATGCGCAGTTCAACAACAAGAAGATATTTCTCGTTC
CCGATAACGCCTCATACCAANCGCAGTTCAAGAACAAGAAGATGTTTCTC
GTTCTCGATAACGCCTCATACCACCACTGCTTTGACGAGGAGGTTAAGGT
GCCCGAAACCAACAGTAAGAAGTACAACGTCGAACTCTTGCGCAAGTACG
GTTGCAGGTCGTTCAAGGTGACGCGTGAGTCGGAGGGTAAGGCTGCTGAG
TACAACTTTGAGGTCCCGGCGCAGGGGTCGCTACCCAATGCGAACCGCAA
GAATGGCGTCAGCAAAGAAGAGATAGCCTCCGTCACTCGGACGTACTTCA
AAAATAGTTTCCCACAATAGGTCGAGGAAAAGGCTGAGACGTACATGAGG
GAGAAGGGGTGGGGGTTAATTTGGACACCGCCGTACATGCCGACTTTCCA
GCCGATCGAGCTGTTCTGGCAGCACGGCAAGCATTACGTGAGCATTCATT
TTGAGAAGGGGCGGAACATGTTGGATGTCTGGAAGAAAATCTGTCTCGGT
TGGTATGGAGACCTGGAATGAGACGGTCAGGAGGGGGGGTGGAAGGCAGC
CAACTGTGGAAAGTTGGTGCAGCATGCCATTGGCAAGATGGAAGAGTGGA
TCGGCCTGTATGGTGGAAACCTGAGCCGCACGGTCGGTAGCCTTGATATC
CAGTGGCAGAGTACCAAGAGGCTACGGCCGAGGATGAGATAGAGGATGGG
GTGGAGGAGCAGACGGATGAGTGGCTGGGTGAGGACGCAGAAGATGCCAT
TGAGGGCTGAAAAAAATGCTAAAAACAAATGCCCTTTTTTGAGCCAATAT
TTTTCGACTTTGATTCCCGAACAGCGACAATAAGGGGCTGCACAGAAGGC
GCCATTCTGAGTGCAAGCTGAAATATTGTTTGATATTTAGCAATTGAGAT
GGCTGTATCATCCTGTTCAACCAATATATGGATCACTTGTGCAAGCCCTG
GGGCCGCATCGTTGGAACACCGCGCTTCAATATTTTTGGAACTTCGCCGG
GTATGATAACACACTAATTTCGTAATACT
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Coding sequence (CDS) from alignment at Scaffold_242:609851..611379-

>EsuBft895_6a-0001 ID=EsuBft895_6a-0001|Name=EsuBft895_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=513bp|location=Sequence derived from alignment at Scaffold_242:609851..611379- (Ectocarpus subulatus male Bft15b)
ATGGATGAGAGCTTTGTTCACCAGGCGCATGGTTCCGCGTACTCGTACTT
TCCTTCTGACGATAAGGGGGTTGTGCAGGATGGGACAGGCCGTACAACGG
GGAAATGTTTGCGTATGATCATGGTGCATGCGATCACGAAGCACAGGCCC
TTGGAGGGATTTCCTATCCGTGAGGGTTGGTTCAAGGCTAAGGAAAATCG
TGCGAAGAAGATTAAGCCTGGCGAGGCGGATTTCGAAATGTCAGATGAGC
AGACAGCAGAATTTCTGTGGCAGGCCAAGTTGGCAACCGGAGATTATCAT
AACGCCATGACGGATGGGATGTTCATGCAGTGGTTGAAGCACCGACTTAC
CCCGGCCTTCGATGCGCATTCAAGAACAAGAAGATGTTTCTCGTTCTCGA
TAACGCCTCATACCACCACTGCTTTGACGAGGAGGTTAAGGTGCCCGAAA
CCAACAGTAAGAAGTACAACGTCGAACTCTTGCGCAAGTACGGTTGCAGG
TCGTTCAAGGTGA
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