EsuBft895_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft895_5a-0001
Unique NameEsuBft895_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:589372..590285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G913
ProteomeIdEsuBft895_5
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length91
Hectar predicted targeting categorysignal peptide
Evalue1.11e-26
EggNOG OGs2CXGS@1|root,2RXB7@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft895_5aEsuBft895_5aEctocarpus subulatus male Bft15bgeneScaffold_242 589372..590285 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_5a-0001-exonEsuBft895_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 589372..590285 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_5a-0001-exonagat-five_prime_utr-14806Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 589372..589390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_5a-0001-cdsEsuBft895_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 589391..589567 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_5a-0001-exonagat-three_prime_utr-22836Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 589568..590285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft895_5a-0001EsuBft895_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 589391..589567 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft895_5a-0001 ID=EsuBft895_5a-0001|Name=EsuBft895_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=914bp|location=Sequence derived from alignment at Scaffold_242:589372..590285+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGCGTCTGGTTAGGCGCATGCTCACCTTGGTGTCATTTGCCGCGTCTT
CTTCAGTGTCCCTGCTGAGTGCAGTGATCCTCAGTACGTCTTGGCTGTTT
TTACTCGGACTGCGGCTTCACTCTCTGGCGCTCAAAGAAATCACTGGCAG
CATTCACGTCGCGGTCTGCTTCCTCTTCCCGTACTGCTTTCAGTAAGTGC
GAACTTTGAGCAAGTCGACGCGTGGACAAGTTGGTGTGAAGCTCTCGTCC
TTGGTTGTTCTGATGATTGGGGAAACTCGAGCACTCAGATGCGAATTTGA
AGTACGTCCCACAACGTGCGTCGTGTCCCTTTCCTGCGACACGTGGACTG
TGCTGCTTCCCTCACAGATACTTGGTATCGGCAATCGACGAGTGGGCGCC
TCACTGGCTCCCGGCCTGCCTGTGGTACAGCTTCCTGATGCAGATGTTCT
GCACTTCCAATCATCAGTACAAGGTGGGGCCAGAATTGGCGTGGTTCAGC
AGCTTGTCGTTTACGCCATTTTGTCGTGCGCGCGAGGATGCACCCAAACT
CGCGAAGACGCTGACGGGTGTGCCGCCCTCGCCTTTGTTGTTGCCCCATG
TTCCCATCCACCCAGCATTCGATGTCTTCCCACCTTGTCCCAGCTCTTCG
TGCCCTACTGCCGGTGGCGTTCCTACGTGAGGTATGCACTTCCCGTGAAT
GACAGAAGAACCCACACCCAGTGATACCATTTGAGTTTCAAGCTTTTTCA
CCGGATGAGGTTCTATCTGTGAGGTTGTGGACCTTATGTTGCCCGACCCA
TTCAGTACAGGTCGCCAAGGCCATCGACGGGTGTTTGACAATCAGGAGGT
TGATGGCCAGGGAGGTGATAACCACGGGGTTGAAATCACTTCCTGGAAAT
ATTGCTGCCGCACG
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protein sequence of EsuBft895_5a-0001

>EsuBft895_5 ID=EsuBft895_5|Name=EsuBft895_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MLTLVSFAASSSVSLLSAVILSTSWLFLLGLRLHSLALKEITGSIHVAVC
FLFPYCFQ
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mRNA from alignment at Scaffold_242:589372..590285+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft895_5a-0001 ID=EsuBft895_5a-0001|Name=EsuBft895_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=914bp|location=Sequence derived from alignment at Scaffold_242:589372..590285+ (Ectocarpus subulatus male Bft15b)
GTTGCGTCTGGTTAGGCGCATGCTCACCTTGGTGTCATTTGCCGCGTCTT
CTTCAGTGTCCCTGCTGAGTGCAGTGATCCTCAGTACGTCTTGGCTGTTT
TTACTCGGACTGCGGCTTCACTCTCTGGCGCTCAAAGAAATCACTGGCAG
CATTCACGTCGCGGTCTGCTTCCTCTTCCCGTACTGCTTTCAGTAAGTGC
GAACTTTGAGCAAGTCGACGCGTGGACAAGTTGGTGTGAAGCTCTCGTCC
TTGGTTGTTCTGATGATTGGGGAAACTCGAGCACTCAGATGCGAATTTGA
AGTACGTCCCACAACGTGCGTCGTGTCCCTTTCCTGCGACACGTGGACTG
TGCTGCTTCCCTCACAGATACTTGGTATCGGCAATCGACGAGTGGGCGCC
TCACTGGCTCCCGGCCTGCCTGTGGTACAGCTTCCTGATGCAGATGTTCT
GCACTTCCAATCATCAGTACAAGGTGGGGCCAGAATTGGCGTGGTTCAGC
AGCTTGTCGTTTACGCCATTTTGTCGTGCGCGCGAGGATGCACCCAAACT
CGCGAAGACGCTGACGGGTGTGCCGCCCTCGCCTTTGTTGTTGCCCCATG
TTCCCATCCACCCAGCATTCGATGTCTTCCCACCTTGTCCCAGCTCTTCG
TGCCCTACTGCCGGTGGCGTTCCTACGTGAGGTATGCACTTCCCGTGAAT
GACAGAAGAACCCACACCCAGTGATACCATTTGAGTTTCAAGCTTTTTCA
CCGGATGAGGTTCTATCTGTGAGGTTGTGGACCTTATGTTGCCCGACCCA
TTCAGTACAGGTCGCCAAGGCCATCGACGGGTGTTTGACAATCAGGAGGT
TGATGGCCAGGGAGGTGATAACCACGGGGTTGAAATCACTTCCTGGAAAT
ATTGCTGCCGCACG
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Coding sequence (CDS) from alignment at Scaffold_242:589372..590285+

>EsuBft895_5a-0001 ID=EsuBft895_5a-0001|Name=EsuBft895_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_242:589372..590285+ (Ectocarpus subulatus male Bft15b)
ATGCTCACCTTGGTGTCATTTGCCGCGTCTTCTTCAGTGTCCCTGCTGAG
TGCAGTGATCCTCAGTACGTCTTGGCTGTTTTTACTCGGACTGCGGCTTC
ACTCTCTGGCGCTCAAAGAAATCACTGGCAGCATTCACGTCGCGGTCTGC
TTCCTCTTCCCGTACTGCTTTCAGTAA
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